genome.fa.s1823.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001823.1 Hibiscus syriacus cultivar Beakdansim tig00003690_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  108896

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2528--2567	21	1.9	21	89	0	62	25	7	7	60	1.50
4393--4431	20	2.0	20	89	0	60	25	17	20	35	1.95
8023--8077	27	2.0	27	89	0	83	21	23	23	30	1.99
8307--8349	20	2.2	20	86	0	59	34	20	13	30	1.92
14035--14138	45	2.3	45	86	6	140	32	16	20	30	1.94
14100--14165	27	2.4	27	94	2	114	27	21	19	31	1.97
20101--20218	33	3.6	33	83	3	157	44	33	8	13	1.74
22609--22655	22	2.1	23	84	7	62	42	21	0	36	1.53
23447--23487	22	1.9	21	85	5	55	26	26	24	21	2.00
23515--23564	22	2.3	22	89	6	75	22	18	14	46	1.84
25401--25426	6	4.3	6	100	0	52	50	19	0	30	1.48
25703--25768	23	3.0	23	82	8	75	28	27	19	24	1.99
26366--26423	20	2.6	22	84	10	75	25	20	20	32	1.97
28586--28652	7	9.6	7	80	0	62	22	0	35	41	1.54
29134--29222	11	8.5	11	68	20	57	38	1	2	58	1.18
29132--29191	19	3.0	21	78	11	63	38	0	1	60	1.07
29140--29199	30	2.1	29	87	6	86	41	1	1	55	1.20
39556--39591	4	8.5	4	88	11	54	0	22	0	77	0.76
39559--39591	9	3.8	9	96	4	59	0	21	0	78	0.75
39556--39592	13	2.8	14	92	8	60	0	21	0	78	0.75
41624--41677	15	3.6	15	97	0	90	24	9	25	40	1.85
51088--51180	12	7.8	12	69	9	64	48	17	13	20	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51091--51194	24	4.3	24	71	9	79	49	16	14	20	1.80
51084--51177	48	2.0	48	89	0	143	48	15	13	21	1.80
53700--53771	19	3.8	19	94	0	126	20	34	27	16	1.95
53746--53779	14	2.4	14	90	0	50	17	38	29	14	1.90
55435--55464	14	2.1	15	93	6	53	13	40	26	20	1.89
55433--55478	24	1.9	24	81	0	56	17	41	21	19	1.90
57938--57980	21	2.0	21	81	0	50	30	30	25	13	1.94
57960--58109	67	2.3	67	89	3	223	29	27	26	17	1.97
58113--58148	17	2.2	16	90	5	54	75	2	22	0	0.94
58416--58487	29	2.5	29	95	0	126	40	9	11	38	1.74
58656--58959	149	2.0	149	98	0	590	27	16	19	35	1.94
64975--65025	15	3.3	15	78	13	50	9	11	1	76	1.10
64970--65011	18	2.4	18	88	4	59	2	14	2	80	0.90
67330--67371	7	6.3	7	78	10	52	40	14	26	19	1.89
67823--67981	45	3.6	45	90	0	203	34	20	7	37	1.81
70866--70892	14	1.9	14	100	0	54	7	11	0	81	0.87
70865--70909	23	2.0	23	83	16	58	4	15	0	80	0.87
70864--70912	11	4.4	11	80	19	57	4	14	0	81	0.83
73719--73903	45	4.1	45	90	0	264	31	19	5	43	1.75
76759--76828	31	2.3	31	84	0	86	27	21	12	38	1.90
76769--76844	31	2.5	31	84	0	98	22	25	14	38	1.92
77530--77594	31	2.1	31	88	0	94	29	15	30	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81319--81363	24	1.9	23	86	4	63	26	2	2	68	1.12
102609--102647	20	1.9	21	89	5	62	17	35	30	15	1.91
103695--103748	22	2.6	20	83	11	72	24	33	12	29	1.92
103792--103846	22	2.6	22	82	5	69	27	27	14	30	1.95
103695--103912	95	2.3	94	80	0	229	27	27	15	30	1.96

Tables:   1

The End!