genome.fa.s1824.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001824.1 Hibiscus syriacus cultivar Beakdansim tig00003692_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82403

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11973--12023	2	26.5	2	84	15	72	45	1	0	52	1.12
12123--12195	32	2.3	31	81	9	85	41	2	6	49	1.44
12151--12395	38	6.7	38	77	17	222	44	4	4	46	1.44
12270--12410	38	3.7	38	84	5	187	44	5	4	45	1.47
12372--12440	29	2.3	30	87	7	95	46	4	2	46	1.37
12403--12496	36	2.7	35	82	12	104	43	1	5	50	1.32
12454--12503	23	2.2	23	85	0	64	38	0	6	56	1.24
19563--20547	84	11.9	84	78	4	953	30	24	19	24	1.98
19540--20571	165	6.2	164	82	6	1010	31	24	19	24	1.98
19540--20574	249	4.2	247	82	3	1078	31	24	19	24	1.98
21135--21219	2	43.5	2	94	4	147	48	0	0	51	1.00
21234--21419	76	2.4	76	77	11	186	42	2	11	43	1.54
21234--21600	36	9.9	38	75	17	287	43	3	7	44	1.51
21302--21600	37	8.1	37	75	15	210	43	4	6	45	1.48
21428--21480	11	4.3	11	76	23	52	45	7	1	45	1.42
21460--21688	37	6.3	38	74	18	177	44	3	6	45	1.45
21459--21602	38	3.7	37	84	11	184	45	4	4	45	1.46
21578--21630	28	1.9	28	88	3	81	50	5	5	37	1.50
21647--21694	25	1.9	25	82	0	60	35	0	10	54	1.35
23822--24103	84	3.4	83	75	6	302	29	24	20	25	1.99
23772--24144	164	2.3	164	88	0	557	30	23	20	25	1.99
24205--24346	37	3.8	36	87	7	196	42	3	6	47	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25434--25499	22	3.0	21	73	6	60	25	4	3	66	1.25
25557--25590	15	2.2	16	89	5	52	20	0	0	79	0.73
30609--30650	17	2.4	18	88	4	59	21	4	0	73	1.01
30859--30965	50	2.1	51	86	5	146	27	6	0	65	1.23
35965--36268	42	7.1	42	62	19	126	33	25	20	20	1.97
35889--36346	86	5.3	86	88	0	664	31	24	21	21	1.98
36552--37143	199	3.0	197	86	3	783	32	19	20	27	1.97
37962--38090	40	3.2	41	77	15	135	17	7	3	72	1.22
38029--38103	5	14.0	5	76	18	55	13	5	2	78	1.02
37989--38095	40	2.7	40	87	5	139	16	5	3	73	1.17
38066--38134	17	4.2	16	72	17	54	17	2	1	78	0.95
38143--38242	51	2.0	51	86	5	143	26	7	1	66	1.24
40986--41266	140	2.0	140	99	0	553	24	24	18	32	1.97
47632--47661	15	2.0	15	93	0	51	16	46	23	13	1.82
54174--54206	2	16.5	2	100	0	66	48	0	0	51	1.00
64501--64573	36	2.0	36	100	0	146	30	16	19	34	1.94
65388--65435	14	3.3	14	81	18	62	31	0	0	68	0.90
65388--65437	15	3.2	17	75	18	63	32	0	0	68	0.90
65395--65437	3	15.0	3	80	9	54	34	0	0	65	0.93
66931--67224	146	2.0	145	83	5	371	40	7	6	45	1.58
68242--68332	46	1.9	49	84	10	127	37	14	19	28	1.91
69088--69172	43	2.0	43	85	0	116	31	9	22	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69247--69300	26	2.0	26	85	3	72	18	18	7	55	1.65
69262--69300	12	2.9	14	81	14	55	15	20	7	56	1.63
71771--71810	21	2.0	21	85	5	55	50	2	2	45	1.28
76381--76416	16	2.2	16	95	0	63	27	0	19	52	1.46
78482--78547	2	33.5	2	88	8	100	48	0	3	48	1.17
79930--79976	21	2.1	23	84	7	62	53	0	12	34	1.39

Tables:   1

The End!