Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001825.1 Hibiscus syriacus cultivar Beakdansim tig00003693_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103959

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3959--4017
22
2.7
23
79
12
70
76
1
5
16
1.05
3984--4067
25
3.4
24
73
16
66
71
0
11
16
1.14
3964--4082
16
7.5
15
69
20
55
72
1
10
15
1.19
4154--4184
2
15.5
2
100
0
62
51
0
0
48
1.00
4241--4293
26
2.0
27
85
7
72
77
3
5
13
1.09
4381--4411
2
15.5
2
93
0
53
54
0
0
45
0.99
4377--4413
8
4.6
8
93
0
56
59
0
0
40
0.97
4375--4489
12
10.2
11
71
17
60
64
1
1
32
1.14
6701--6755
2
27.5
2
100
0
110
49
0
0
50
1.00
10943--10976
17
2.0
17
100
0
68
35
11
35
17
1.87
12447--12487
2
21.0
2
80
14
50
48
2
0
48
1.14
12446--12489
16
2.9
16
83
10
56
47
2
0
50
1.13
12442--12485
19
2.3
19
84
7
54
45
2
0
52
1.13
12553--12595
17
2.6
17
81
3
61
46
0
6
46
1.30
12722--12791
14
4.7
14
72
11
50
30
1
1
67
1.08
12769--12797
14
2.1
14
100
0
58
13
0
0
86
0.58
15555--15640
29
2.9
32
76
10
85
32
16
6
44
1.74
18437--18559
55
2.2
55
85
0
156
41
8
17
32
1.80
18742--18936
58
3.0
67
76
14
237
29
14
25
30
1.95
18982--19385
45
9.0
45
92
0
655
39
10
22
27
1.87
20845--20876
16
1.9
17
93
6
57
59
3
6
31
1.38
28565--28954
58
6.8
58
85
4
508
36
12
16
33
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
29168--29372
68
3.0
68
92
0
338
31
16
24
28
1.96
29418--29852
45
9.7
45
87
2
572
39
11
21
27
1.87
35111--35168
28
2.1
28
100
0
116
36
17
10
36
1.84
49310--49379
22
3.1
22
83
2
95
34
27
22
15
1.95
50155--50191
18
2.1
17
90
5
56
72
13
5
8
1.24
52916--52988
4
18.2
4
100
0
146
26
0
24
49
1.51
53069--53150
42
2.0
42
85
7
114
32
17
14
35
1.90
54517--54605
42
2.1
42
87
0
124
33
13
14
38
1.85
55015--55142
42
3.1
42
78
7
120
28
18
17
35
1.94
57250--57297
4
12.0
4
90
0
78
70
0
4
25
1.04
57318--57538
109
2.0
111
98
1
428
42
14
10
31
1.81
58171--58240
31
2.3
31
92
2
115
24
11
14
50
1.75
59666--59698
3
10.7
3
93
6
57
36
0
0
63
0.95
63047--63108
32
1.9
32
90
0
97
17
12
11
58
1.63
65333--65362
15
2.1
15
93
6
53
13
20
13
53
1.72
67260--67332
36
2.0
36
97
0
137
35
20
24
19
1.95
70298--70340
22
2.0
22
85
0
59
27
16
18
37
1.92
70504--70595
33
2.7
34
76
15
86
36
19
11
31
1.88
84890--84936
2
24.0
2
95
4
87
48
0
0
51
1.00
85430--85459
14
2.1
14
93
0
51
36
16
3
43
1.65
90501--90550
21
2.4
21
96
0
91
24
24
22
30
1.99
93065--93131
23
3.2
19
72
24
53
43
1
1
53
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
93075--93129
23
2.3
24
79
14
62
41
1
1
54
1.21
100518--100694
65
2.8
65
85
5
231
28
12
20
38
1.89

Tables:   1

The End!