genome.fa.s1826.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001826.1 Hibiscus syriacus cultivar Beakdansim tig00003694_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88639

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8876--8954	21	3.6	23	72	8	74	25	18	26	29	1.98
14802--14968	65	2.6	62	83	9	203	24	17	23	33	1.96
16346--16413	35	1.9	35	87	0	100	33	29	23	13	1.93
16490--16581	24	3.9	23	82	4	103	38	17	18	26	1.93
19059--19090	13	2.5	13	94	0	55	15	25	43	15	1.86
19866--19965	45	2.2	45	85	0	137	29	20	17	34	1.95
19982--20140	45	3.5	45	90	1	237	26	23	18	30	1.98
19823--20093	121	2.3	121	92	1	447	25	21	19	33	1.97
19861--20304	166	2.7	165	89	1	676	26	22	17	33	1.96
20027--20259	121	1.9	119	84	3	306	26	22	17	33	1.96
20148--20335	45	4.2	45	90	0	288	25	22	15	36	1.93
20072--20213	76	1.9	74	85	2	194	26	21	17	34	1.96
20488--20558	3	23.0	3	84	5	79	36	0	1	61	1.05
28560--28608	16	2.9	16	85	11	71	28	34	6	30	1.82
32913--32968	2	29.5	2	76	16	57	48	3	1	46	1.30
33063--33130	2	34.0	2	73	16	52	48	4	5	41	1.47
33103--33162	19	2.8	23	85	9	67	46	11	6	35	1.67
33222--33265	17	2.6	17	77	0	52	38	4	6	50	1.50
33305--33343	15	2.6	15	88	12	53	46	15	2	35	1.60
34379--34412	2	17.5	2	93	6	61	47	0	0	52	1.00
35077--35196	61	2.0	61	90	3	188	34	16	30	19	1.94
35280--35336	14	4.3	13	79	14	55	10	14	15	59	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35280--35323	7	6.6	7	86	5	56	13	13	13	59	1.62
41080--41260	45	4.1	44	74	11	154	29	19	17	33	1.95
40913--41328	132	3.2	131	79	4	435	32	19	15	32	1.93
41608--41634	14	1.9	14	100	0	54	33	7	7	51	1.58
42285--42334	21	2.4	21	80	6	66	22	26	18	34	1.96
42324--42437	21	5.5	21	75	7	83	39	19	20	21	1.93
42324--42462	62	2.3	60	86	8	163	38	18	19	23	1.93
42426--42580	20	7.7	20	81	6	93	30	24	18	27	1.98
42341--42478	62	2.2	62	93	0	240	39	20	18	21	1.92
42361--42480	21	5.8	21	70	14	88	40	20	17	20	1.91
42468--42575	40	2.7	40	89	0	153	25	27	18	28	1.98
43320--43373	24	2.2	24	90	0	81	22	16	20	40	1.91
43548--43572	12	2.1	12	100	0	50	72	0	28	0	0.86
45875--45929	19	2.8	20	78	13	60	38	23	20	18	1.93
45902--46028	33	3.8	33	92	0	209	45	20	22	11	1.83
45882--46032	19	8.7	18	68	24	85	44	21	22	11	1.84
46028--46104	19	4.3	19	78	18	85	11	15	25	46	1.80
46044--46169	33	3.8	33	92	2	200	11	20	22	46	1.82
46038--46169	19	7.7	19	68	23	89	10	20	21	46	1.80
46095--46151	14	3.7	14	70	20	51	10	24	21	43	1.83
46276--46312	14	2.6	14	91	0	65	45	21	0	32	1.52
47668--47748	21	3.9	21	69	6	65	24	22	32	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47653--47761	42	2.6	41	82	5	112	22	20	33	22	1.97
48164--48468	94	3.3	94	91	3	476	46	18	13	22	1.83
50189--50287	33	3.0	33	92	1	162	43	21	24	11	1.84
50161--50306	19	8.1	19	72	17	123	46	18	23	11	1.81
50313--50530	20	10.7	20	72	11	129	26	19	19	34	1.96
50313--50530	41	5.3	40	75	9	127	26	19	19	34	1.96
50316--50530	61	3.5	60	73	9	166	26	20	20	33	1.96
66346--66389	19	2.3	19	84	7	54	52	2	11	34	1.50
66460--66508	13	3.8	13	81	5	55	57	0	22	20	1.41
70930--70970	21	2.0	21	90	4	66	41	14	17	26	1.88
71077--71112	17	2.3	15	90	9	54	47	0	0	52	1.00
76000--76037	19	2.0	20	89	5	60	21	34	18	26	1.96
80805--80851	21	2.2	20	82	10	58	78	6	0	14	0.93

Tables:   1

The End!