Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001827.1 Hibiscus syriacus cultivar Beakdansim tig00003695_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62958

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
627--670
2
22.0
2
90
9
72
50
0
2
47
1.13
803--829
13
2.1
13
100
0
54
44
22
0
33
1.53
1598--1740
32
4.4
33
83
3
155
33
1
37
27
1.66
1598--1740
65
2.2
65
83
0
169
33
1
37
27
1.66
1756--1892
42
3.3
42
78
8
138
33
1
33
31
1.67
1709--1888
83
2.2
81
81
5
193
34
1
32
31
1.68
1747--1860
42
2.8
41
84
5
142
31
0
36
31
1.58
16400--16458
30
2.0
30
96
0
109
28
22
10
38
1.86
17415--17510
47
2.1
45
92
7
158
39
9
20
30
1.84
19014--19047
3
11.3
3
93
0
59
29
0
2
67
1.05
21040--21108
29
2.5
28
81
11
81
46
5
10
37
1.62
21131--21173
22
2.0
22
95
0
77
37
2
11
48
1.52
21541--21617
28
2.7
29
77
6
84
53
1
3
41
1.27
22565--22817
139
1.8
139
95
1
463
38
12
14
34
1.84
24351--24395
21
2.1
21
91
0
72
44
17
4
33
1.69
25429--25472
22
2.0
22
83
12
56
29
29
15
25
1.96
27967--28223
69
3.8
67
79
5
239
24
22
21
30
1.99
28110--28262
69
2.2
69
80
2
164
27
17
20
34
1.95
29794--29877
7
12.1
7
96
1
152
70
1
28
0
0.95
35885--36008
65
1.9
65
84
0
167
38
22
20
18
1.93
36732--36763
2
16.0
2
100
0
64
50
0
0
50
1.00
37255--37311
30
1.9
30
88
0
87
22
19
24
33
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37328--37374
22
2.1
22
92
0
76
25
19
27
27
1.99
41721--41768
2
24.0
2
100
0
96
50
0
0
50
1.00
42313--42393
22
3.7
22
84
0
99
28
20
23
27
1.99
45768--45809
13
3.2
13
82
0
57
26
19
26
28
1.98
51294--51336
16
2.7
16
89
7
61
32
16
4
46
1.67
51469--51501
14
2.4
14
94
0
57
27
6
9
57
1.53
52138--52176
15
2.6
15
79
0
51
38
12
7
41
1.72
52138--52197
27
2.1
29
84
9
79
40
8
6
45
1.61
52970--53018
16
3.2
16
73
23
52
40
4
6
48
1.47
52973--53043
29
2.4
30
79
9
74
39
4
7
49
1.49
53072--53106
15
2.4
15
90
4
54
48
2
5
42
1.41
53075--53172
27
3.7
27
83
1
117
50
5
4
40
1.44
53156--53186
13
2.3
14
94
5
55
38
3
6
51
1.44
53163--53197
18
1.9
18
94
0
61
42
2
5
48
1.41
53311--53385
29
2.5
30
82
4
80
40
2
8
49
1.46
53394--53427
15
2.3
15
90
10
52
38
11
8
41
1.73
53439--53473
15
2.4
15
90
4
54
48
2
5
42
1.41
53528--53737
18
11.7
17
64
24
67
43
4
7
44
1.54
53528--53609
40
2.1
39
86
8
114
41
3
8
46
1.52
53528--53569
9
4.7
9
77
11
50
40
2
7
50
1.43
53528--53927
20
20.1
20
66
22
86
43
5
7
44
1.55
53454--53688
27
8.4
27
76
14
174
45
5
6
41
1.55
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53586--53727
24
5.8
24
72
16
80
44
4
7
43
1.53
53791--53825
15
2.4
15
90
4
54
48
2
5
42
1.41
53794--53860
27
2.5
27
85
0
89
47
4
7
40
1.52
53821--53927
13
7.9
13
65
20
51
41
4
8
45
1.55
62482--62570
7
12.1
7
73
14
56
6
17
0
75
1.02

Tables:   1

The End!