Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001829.1 Hibiscus syriacus cultivar Beakdansim tig00003697_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 68596
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.33
Found at i:1594 original size:45 final size:45
Alignment explanation
Indices: 1544--1635 Score: 184
Period size: 45 Copynumber: 2.0 Consensus size: 45
1534 GCGGTATGTG
1544 TTCAAAACAATACTCAATGTGGGACTATAGCCATAAGATCATATC
1 TTCAAAACAATACTCAATGTGGGACTATAGCCATAAGATCATATC
1589 TTCAAAACAATACTCAATGTGGGACTATAGCCATAAGATCATATC
1 TTCAAAACAATACTCAATGTGGGACTATAGCCATAAGATCATATC
1634 TT
1 TT
1636 TTAGGACAAT
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
45 47 1.00
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (45 bp):
TTCAAAACAATACTCAATGTGGGACTATAGCCATAAGATCATATC
Found at i:3082 original size:20 final size:20
Alignment explanation
Indices: 3057--3108 Score: 95
Period size: 20 Copynumber: 2.6 Consensus size: 20
3047 AGGTATACAC
3057 CGATGCACCAATCCATGCAT
1 CGATGCACCAATCCATGCAT
3077 CGATGCACCAATCCATGCAT
1 CGATGCACCAATCCATGCAT
*
3097 CGATGCATCAAT
1 CGATGCACCAAT
3109 GAATAAATTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 31 1.00
ACGTcount: A:0.31, C:0.33, G:0.15, T:0.21
Consensus pattern (20 bp):
CGATGCACCAATCCATGCAT
Found at i:3188 original size:65 final size:64
Alignment explanation
Indices: 3119--3279 Score: 232
Period size: 65 Copynumber: 2.5 Consensus size: 64
3109 GAATAAATTG
* * *
3119 AACATCGAATACATTTTATGCATCGATGCACTCTCCATGCATTGATACACTCAGGATTTTATGAA
1 AACATCGAATGCATTTTATGCATCGATGCACTCACCATGCATCGATACACTCAGGATTTT-TGAA
*** * * *
3184 AACATCGAATGCATTTTATGCATCGATGCAGAGACCATGCATCGATGCACTCAGGCTTTTTTAA
1 AACATCGAATGCATTTTATGCATCGATGCACTCACCATGCATCGATACACTCAGGATTTTTGAA
3248 AACATCGAATGCATTTTATGCATCGATGCACT
1 AACATCGAATGCATTTTATGCATCGATGCACT
3280 AAGTGTTCCA
Statistics
Matches: 85, Mismatches: 11, Indels: 1
0.88 0.11 0.01
Matches are distributed among these distances:
64 33 0.39
65 52 0.61
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.31
Consensus pattern (64 bp):
AACATCGAATGCATTTTATGCATCGATGCACTCACCATGCATCGATACACTCAGGATTTTTGAA
Found at i:11191 original size:2 final size:2
Alignment explanation
Indices: 11186--11217 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
11176 TTATTAAAGG
11186 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
11218 ACATGGTAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:12950 original size:21 final size:21
Alignment explanation
Indices: 12926--12973 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
12916 CCAAGGACGA
12926 GAAGACCATTCATAAAGACAT
1 GAAGACCATTCATAAAGACAT
* *
12947 GAAGACCCTTCATAAATACAT
1 GAAGACCATTCATAAAGACAT
12968 GAAGAC
1 GAAGAC
12974 AACTTCGCAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.46, C:0.21, G:0.15, T:0.19
Consensus pattern (21 bp):
GAAGACCATTCATAAAGACAT
Found at i:13147 original size:12 final size:12
Alignment explanation
Indices: 13130--13164 Score: 70
Period size: 12 Copynumber: 2.9 Consensus size: 12
13120 TAACACCACG
13130 TGCATTTGCATC
1 TGCATTTGCATC
13142 TGCATTTGCATC
1 TGCATTTGCATC
13154 TGCATTTGCAT
1 TGCATTTGCAT
13165 TCTTATTTTT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 23 1.00
ACGTcount: A:0.17, C:0.23, G:0.17, T:0.43
Consensus pattern (12 bp):
TGCATTTGCATC
Found at i:13182 original size:6 final size:6
Alignment explanation
Indices: 13130--13165 Score: 54
Period size: 6 Copynumber: 6.0 Consensus size: 6
13120 TAACACCACG
* *
13130 TGCATT TGCATC TGCATT TGCATC TGCATT TGCATT
1 TGCATT TGCATT TGCATT TGCATT TGCATT TGCATT
13166 CTTATTTTTG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
6 26 1.00
ACGTcount: A:0.17, C:0.22, G:0.17, T:0.44
Consensus pattern (6 bp):
TGCATT
Found at i:16535 original size:18 final size:17
Alignment explanation
Indices: 16512--16545 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
16502 CGGTCTGTTT
16512 TATTTTAATGATTTTATA
1 TATTTTAAT-ATTTTATA
*
16530 TATTTTGATATTTTAT
1 TATTTTAATATTTTAT
16546 TTAATTGTTC
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 7 0.47
18 8 0.53
ACGTcount: A:0.29, C:0.00, G:0.06, T:0.65
Consensus pattern (17 bp):
TATTTTAATATTTTATA
Found at i:19180 original size:30 final size:30
Alignment explanation
Indices: 19146--19225 Score: 117
Period size: 30 Copynumber: 2.7 Consensus size: 30
19136 TGTAAACACC
* *
19146 ATTTTTCAACACCAACACCTACCACCCCAT
1 ATTTTTCAACACCAACACCCACCACCACAT
*
19176 ATTTTTCAACACCAACACCCACCATCACAT
1 ATTTTTCAACACCAACACCCACCACCACAT
*
19206 TTTTTTCAACACCAAC-CCCA
1 ATTTTTCAACACCAACACCCA
19226 TCATCCCTTG
Statistics
Matches: 46, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
29 4 0.09
30 42 0.91
ACGTcount: A:0.34, C:0.41, G:0.00, T:0.25
Consensus pattern (30 bp):
ATTTTTCAACACCAACACCCACCACCACAT
Found at i:20173 original size:107 final size:108
Alignment explanation
Indices: 19986--20212 Score: 420
Period size: 107 Copynumber: 2.1 Consensus size: 108
19976 GTTTATACTA
19986 TGGTCACTTTTTTTATTTTATTCCGATTATGCATGCTGATATTGTTTTATTTTAATTTAGTCACT
1 TGGTCACTTTTTTTATTTTATTCCGATTATGCATGCTGATATTGTTTTATTTTAATTTAGTCACT
20051 ATTAATTTTTGATTTAGCTACAATTATTTTAATTTTTGCATTT
66 ATTAATTTTTGATTTAGCTACAATTATTTTAATTTTTGCATTT
* *
20094 TGGTCACTTTTTTTATTTTATTCCGATTGT-CATGCTGATTTTGTTTTATTTTAATTTAGTCACT
1 TGGTCACTTTTTTTATTTTATTCCGATTATGCATGCTGATATTGTTTTATTTTAATTTAGTCACT
*
20158 GTTAATTTTTGATTTAGCTACAATTATTTTAATTTTTGCATTT
66 ATTAATTTTTGATTTAGCTACAATTATTTTAATTTTTGCATTT
20201 TGGTCACTTTTT
1 TGGTCACTTTTT
20213 ATTTTTGTTT
Statistics
Matches: 116, Mismatches: 3, Indels: 1
0.97 0.03 0.01
Matches are distributed among these distances:
107 87 0.75
108 29 0.25
ACGTcount: A:0.21, C:0.11, G:0.11, T:0.57
Consensus pattern (108 bp):
TGGTCACTTTTTTTATTTTATTCCGATTATGCATGCTGATATTGTTTTATTTTAATTTAGTCACT
ATTAATTTTTGATTTAGCTACAATTATTTTAATTTTTGCATTT
Found at i:20272 original size:107 final size:107
Alignment explanation
Indices: 19986--20252 Score: 288
Period size: 107 Copynumber: 2.5 Consensus size: 107
19976 GTTTATACTA
* * * * * * ** *
19986 TGGTCACTTTTTTTATTTTATTCCGATTATGCATGCTGATATTGTTTTATTTTAATTTAGTCACT
1 TGGTCACTTTTTATATTTTATTCAGATTCT-AATGCTGATTTTCTCGTATTTTAATTTAATCACT
*
20051 ATTAATTTTTGATTTAGCTACAATTATTTTAATTTTTGCATTT
65 GTTAATTTTTGATTTAGCTACAATTATTTTAATTTTTGCATTT
* * * * * ** *
20094 TGGTCACTTTTTTTATTTTATTCCGATTGTCATGCTGATTTTGTTTTATTTTAATTTAGTCACTG
1 TGGTCACTTTTTATATTTTATTCAGATTCTAATGCTGATTTTCTCGTATTTTAATTTAATCACTG
20159 TTAATTTTTGATTTAGCTACAATTATTTTAATTTTTGCATTT
66 TTAATTTTTGATTTAGCTACAATTATTTTAATTTTTGCATTT
* * * *
20201 TGGTCACTTTTTAT-TTTTGTTTAG-TTACTAACT-TTTATTTTCTCGTATTTTA
1 TGGTCACTTTTTATATTTTATTCAGATT-CTAA-TGCTGATTTTCTCGTATTTTA
20253 GTTATTAATA
Statistics
Matches: 143, Mismatches: 14, Indels: 6
0.88 0.09 0.04
Matches are distributed among these distances:
105 2 0.01
106 23 0.16
107 89 0.62
108 29 0.20
ACGTcount: A:0.21, C:0.10, G:0.10, T:0.58
Consensus pattern (107 bp):
TGGTCACTTTTTATATTTTATTCAGATTCTAATGCTGATTTTCTCGTATTTTAATTTAATCACTG
TTAATTTTTGATTTAGCTACAATTATTTTAATTTTTGCATTT
Found at i:20358 original size:6 final size:6
Alignment explanation
Indices: 20286--20340 Score: 51
Period size: 6 Copynumber: 9.2 Consensus size: 6
20276 GAATTAGGTC
* * *
20286 TTTA-T TTTATG TTTA-T TTTATT TTATATT TTTAAT GTTATT TATTATT
1 TTTATT TTTATT TTTATT TTTATT TT-TATT TTTATT TTTATT T-TTATT
20334 TTTATT T
1 TTTATT T
20341 CAATTAAGTT
Statistics
Matches: 40, Mismatches: 6, Indels: 7
0.75 0.11 0.13
Matches are distributed among these distances:
5 8 0.20
6 20 0.50
7 12 0.30
ACGTcount: A:0.22, C:0.00, G:0.04, T:0.75
Consensus pattern (6 bp):
TTTATT
Found at i:26352 original size:36 final size:36
Alignment explanation
Indices: 26306--26385 Score: 97
Period size: 36 Copynumber: 2.2 Consensus size: 36
26296 ATTGTTTTTC
* *
26306 TGAAAAAAGTTTCGTCTCACTAAAGACAGTTTCCCT
1 TGAAACAAGTTTCGTCTCACTAAAGACAATTTCCCT
* * **
26342 TGAAACAAGTTTTGTCTCTCTTGAGACAATTTCCCT
1 TGAAACAAGTTTCGTCTCACTAAAGACAATTTCCCT
*
26378 TGTAACAA
1 TGAAACAA
26386 AATCGTTGAA
Statistics
Matches: 37, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
36 37 1.00
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34
Consensus pattern (36 bp):
TGAAACAAGTTTCGTCTCACTAAAGACAATTTCCCT
Found at i:26460 original size:39 final size:41
Alignment explanation
Indices: 26417--26497 Score: 98
Period size: 39 Copynumber: 2.0 Consensus size: 41
26407 TGAAGCAAAA
*
26417 TTGTCAC-CTTTGAGATAG-TTTTCCAT-GAAAC-AGAAGATT
1 TTGTCACGC-TTGAGACAGTTTTTCC-TCGAAACAAGAAGATT
*
26456 TTGTCTCGCTTGAGACAGTTTTTCCTCGAAACAAGAAGATT
1 TTGTCACGCTTGAGACAGTTTTTCCTCGAAACAAGAAGATT
26497 T
1 T
26498 ATTACACTCA
Statistics
Matches: 36, Mismatches: 2, Indels: 6
0.82 0.05 0.14
Matches are distributed among these distances:
39 15 0.42
40 12 0.33
41 9 0.25
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36
Consensus pattern (41 bp):
TTGTCACGCTTGAGACAGTTTTTCCTCGAAACAAGAAGATT
Found at i:26577 original size:24 final size:24
Alignment explanation
Indices: 26550--26605 Score: 103
Period size: 24 Copynumber: 2.3 Consensus size: 24
26540 CTTAAGATAA
*
26550 TTTTTACTTAAAAGAAGACATTTC
1 TTTTCACTTAAAAGAAGACATTTC
26574 TTTTCACTTAAAAGAAGACATTTC
1 TTTTCACTTAAAAGAAGACATTTC
26598 TTTTCACT
1 TTTTCACT
26606 CAAGATTTTT
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 31 1.00
ACGTcount: A:0.34, C:0.16, G:0.07, T:0.43
Consensus pattern (24 bp):
TTTTCACTTAAAAGAAGACATTTC
Found at i:26673 original size:39 final size:39
Alignment explanation
Indices: 26619--27126 Score: 270
Period size: 36 Copynumber: 14.0 Consensus size: 39
26609 GATTTTTTAA
*
26619 AGAAGATTTTGTCTCGCTTGAGATAATTTCCCTCGAAAC
1 AGAAGATTTTGTCTCGCTTGAGATAGTTTCCCTCGAAAC
* *
26658 AGAAGATTTTATCTCGCTTGAGATAGTTTCCCTCAAAAC
1 AGAAGATTTTGTCTCGCTTGAGATAGTTTCCCTCGAAAC
* *
26697 AGAATATTTTGTCTCACTTGAGATAGTTTCCCTCGAAAC
1 AGAAGATTTTGTCTCGCTTGAGATAGTTTCCCTCGAAAC
26736 AGAAGATTTTGTCT--C-------AGTTTCCCTCGAAAC
1 AGAAGATTTTGTCTCGCTTGAGATAGTTTCCCTCGAAAC
* * * * *
26766 AGAAGA-TTT-TCTCTCTTGAGACAATTTCTCTTGAAAC
1 AGAAGATTTTGTCTCGCTTGAGATAGTTTCCCTCGAAAC
* * * *
26803 -G-A-ATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAAC
1 AGAAGATTTTGTCTCGCTTGAGATAGTTTCCCTCGAAAC
* * * * *
26839 -G-A-ATTTGGTCTCTCTTGAGACAGTTTCTCTTGAAAC
1 AGAAGATTTTGTCTCGCTTGAGATAGTTTCCCTCGAAAC
** * * *
26875 --AA-ATTTTGTCTTTCTTGAGACAAGTTTCTCTTGAAAC
1 AGAAGATTTTGTCTCGCTTGAGA-TAGTTTCCCTCGAAAC
* * *
26912 -G-A-ATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAAC
1 AGAAGATTTTGTCTCGCTTGAGATAGTTTCCCTCGAAAC
* * * * *
26948 -G-AG-TTTTGT-TTGTATTGAGACAGTTTCTCTTGAAAC
1 AGAAGATTTTGTCTCG-CTTGAGATAGTTTCCCTCGAAAC
** * * *
26984 -G-A-ATTTTGTCTCTTTTGAGACAGTTTCTCTTGAAAC
1 AGAAGATTTTGTCTCGCTTGAGATAGTTTCCCTCGAAAC
* * * * *
27020 --AA-ATTTT-TTTTGTCTTGAGACAGTTTCTCTTGAAAC
1 AGAAGATTTTGTCTCG-CTTGAGATAGTTTCCCTCGAAAC
* *
27056 -G-A-ATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAAC
1 AGAAGATTTTGTCTCGCTTGAGATAGTTTCCCTCGAAAC
* * *
27092 -G-AG-TTTTGTCT-GTCTTGAGACAATTTCCCTTGAAA
1 AGAAGATTTTGTCTCG-CTTGAGATAGTTTCCCTCGAAA
27127 TAAGAAATGT
Statistics
Matches: 407, Mismatches: 38, Indels: 51
0.82 0.08 0.10
Matches are distributed among these distances:
28 3 0.01
29 3 0.01
30 22 0.05
34 1 0.00
35 7 0.02
36 238 0.58
37 49 0.12
39 84 0.21
ACGTcount: A:0.25, C:0.19, G:0.17, T:0.40
Consensus pattern (39 bp):
AGAAGATTTTGTCTCGCTTGAGATAGTTTCCCTCGAAAC
Found at i:26757 original size:30 final size:30
Alignment explanation
Indices: 26721--26780 Score: 111
Period size: 30 Copynumber: 2.0 Consensus size: 30
26711 CACTTGAGAT
*
26721 AGTTTCCCTCGAAACAGAAGATTTTGTCTC
1 AGTTTCCCTCGAAACAGAAGATTTTCTCTC
26751 AGTTTCCCTCGAAACAGAAGATTTTCTCTC
1 AGTTTCCCTCGAAACAGAAGATTTTCTCTC
26781 TTGAGACAAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.27, C:0.25, G:0.15, T:0.33
Consensus pattern (30 bp):
AGTTTCCCTCGAAACAGAAGATTTTCTCTC
Found at i:26797 original size:15 final size:16
Alignment explanation
Indices: 26777--26918 Score: 56
Period size: 15 Copynumber: 8.1 Consensus size: 16
26767 GAAGATTTTC
26777 TCTCTTGAGACAA-TT
1 TCTCTTGAGACAATTT
*
26792 TCTCTTGAAACGAATTTTGT
1 TCTCTTGAGAC-AA--TT-T
*
26812 CTCTCTTGAGAC-AGTT
1 -TCTCTTGAGACAATTT
*
26828 TCTCTTGAAACGAATTTGGT
1 TCTCTTGAGAC-AA-TT--T
*
26848 CTCTCTTGAGAC-AGTT
1 -TCTCTTGAGACAATTT
*
26864 TCTCTTGAAACAAATTTT
1 TCTCTTGAGAC-AA-TTT
*
26882 GTCTTTCTTGAGACAAGTT
1 -TC--TCTTGAGACAATTT
*
26901 TCTCTTGAAACGAATTT
1 TCTCTTGAGAC-AATTT
26918 T
1 T
26919 GTCTCTCTTG
Statistics
Matches: 95, Mismatches: 13, Indels: 36
0.66 0.09 0.25
Matches are distributed among these distances:
15 30 0.32
16 12 0.13
17 8 0.08
18 6 0.06
19 7 0.07
20 4 0.04
21 28 0.29
ACGTcount: A:0.25, C:0.18, G:0.15, T:0.42
Consensus pattern (16 bp):
TCTCTTGAGACAATTT
Found at i:26817 original size:21 final size:19
Alignment explanation
Indices: 26792--26929 Score: 64
Period size: 21 Copynumber: 7.4 Consensus size: 19
26782 TGAGACAATT
26792 TCTCTTGAAACGAATTTTGTC
1 TCTCTTGAAAC-AA-TTTGTC
* *
26813 TCTCTTGAGAC-A---GTT
1 TCTCTTGAAACAATTTGTC
26828 TCTCTTGAAACGAATTTGGTC
1 TCTCTTGAAAC-AATTT-GTC
* *
26849 TCTCTTGAGAC-A---GTT
1 TCTCTTGAAACAATTTGTC
26864 TCTCTTGAAACAAATTTTGTC
1 TCTCTTGAAAC-AA-TTTGTC
* * *
26885 TTTCTTGAGACAA---GTT
1 TCTCTTGAAACAATTTGTC
26901 TCTCTTGAAACGAATTTTGTC
1 TCTCTTGAAAC-AA-TTTGTC
26922 TCTCTTGA
1 TCTCTTGA
26930 GACAGTTTCC
Statistics
Matches: 86, Mismatches: 14, Indels: 34
0.64 0.10 0.25
Matches are distributed among these distances:
15 24 0.28
16 11 0.13
17 4 0.05
19 2 0.02
20 2 0.02
21 43 0.50
ACGTcount: A:0.23, C:0.19, G:0.16, T:0.42
Consensus pattern (19 bp):
TCTCTTGAAACAATTTGTC
Found at i:26820 original size:36 final size:36
Alignment explanation
Indices: 26775--27126 Score: 515
Period size: 36 Copynumber: 9.8 Consensus size: 36
26765 CAGAAGATTT
*
26775 TCTCTCTTGAGACAATTTCTCTTGAAACGAATTTTG
1 TCTCTCTTGAGACAGTTTCTCTTGAAACGAATTTTG
*
26811 TCTCTCTTGAGACAGTTTCTCTTGAAACGAATTTGG
1 TCTCTCTTGAGACAGTTTCTCTTGAAACGAATTTTG
*
26847 TCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTTG
1 TCTCTCTTGAGACAGTTTCTCTTGAAACGAATTTTG
*
26883 TCTTTCTTGAGACAAGTTTCTCTTGAAACGAATTTTG
1 TCTCTCTTGAGAC-AGTTTCTCTTGAAACGAATTTTG
* *
26920 TCTCTCTTGAGACAGTTTCCCTTGAAACGAGTTTTG
1 TCTCTCTTGAGACAGTTTCTCTTGAAACGAATTTTG
* * *
26956 TTTGTATTGAGACAGTTTCTCTTGAAACGAATTTTG
1 TCTCTCTTGAGACAGTTTCTCTTGAAACGAATTTTG
* * *
26992 TCTCTTTTGAGACAGTTTCTCTTGAAACAAATTTTT
1 TCTCTCTTGAGACAGTTTCTCTTGAAACGAATTTTG
* *
27028 TTTGTCTTGAGACAGTTTCTCTTGAAACGAATTTTG
1 TCTCTCTTGAGACAGTTTCTCTTGAAACGAATTTTG
* * *
27064 TCTCTCTTGAGATAGTTTCCCTTGAAACGAGTTTTG
1 TCTCTCTTGAGACAGTTTCTCTTGAAACGAATTTTG
* * *
27100 TCTGTCTTGAGACAATTTCCCTTGAAA
1 TCTCTCTTGAGACAGTTTCTCTTGAAA
27127 TAAGAAATGT
Statistics
Matches: 283, Mismatches: 32, Indels: 2
0.89 0.10 0.01
Matches are distributed among these distances:
36 249 0.88
37 34 0.12
ACGTcount: A:0.23, C:0.18, G:0.17, T:0.42
Consensus pattern (36 bp):
TCTCTCTTGAGACAGTTTCTCTTGAAACGAATTTTG
Found at i:26925 original size:145 final size:144
Alignment explanation
Indices: 26775--27126 Score: 571
Period size: 145 Copynumber: 2.4 Consensus size: 144
26765 CAGAAGATTT
* * * *
26775 TCTCTCTTGAGACAATTTCTCTTGAAACGAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACG
1 TCTCTCTTGAGACAGTTTCCCTTGAAACGAGTTTTGTCTGTCTTGAGACAGTTTCTCTTGAAACG
26840 AATTTGGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTTGTCTT-TCTTGAGACAAGTTTCT
66 AATTTGGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTT-TCTTGTCTTGAGAC-AGTTTCT
26904 CTTGAAACGAATTTTG
129 CTTGAAACGAATTTTG
* *
26920 TCTCTCTTGAGACAGTTTCCCTTGAAACGAGTTTTGTTTGTATTGAGACAGTTTCTCTTGAAACG
1 TCTCTCTTGAGACAGTTTCCCTTGAAACGAGTTTTGTCTGTCTTGAGACAGTTTCTCTTGAAACG
* * *
26985 AATTTTGTCTCTTTTGAGACAGTTTCTCTTGAAACAAATTTTTTTTGTCTTGAGACAGTTTCTCT
66 AATTTGGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTTTCTTGTCTTGAGACAGTTTCTCT
27050 TGAAACGAATTTTG
131 TGAAACGAATTTTG
* * *
27064 TCTCTCTTGAGATAGTTTCCCTTGAAACGAGTTTTGTCTGTCTTGAGACAATTTCCCTTGAAA
1 TCTCTCTTGAGACAGTTTCCCTTGAAACGAGTTTTGTCTGTCTTGAGACAGTTTCTCTTGAAA
27127 TAAGAAATGT
Statistics
Matches: 192, Mismatches: 14, Indels: 3
0.92 0.07 0.01
Matches are distributed among these distances:
144 84 0.44
145 108 0.56
ACGTcount: A:0.23, C:0.18, G:0.17, T:0.42
Consensus pattern (144 bp):
TCTCTCTTGAGACAGTTTCCCTTGAAACGAGTTTTGTCTGTCTTGAGACAGTTTCTCTTGAAACG
AATTTGGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTTTCTTGTCTTGAGACAGTTTCTCT
TGAAACGAATTTTG
Found at i:26968 original size:181 final size:180
Alignment explanation
Indices: 26781--27126 Score: 557
Period size: 181 Copynumber: 1.9 Consensus size: 180
26771 ATTTTCTCTC
*
26781 TTGAGACAATTTCTCTTGAAACGAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACGAATTTG
1 TTGAGACAATTTCTCTTGAAACGAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTG
* *
26846 GTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTTGTCTTTCTTGAGACAAGTTTCTCTTGAAA
66 GTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTTGTCTCTCTTGAGA-AAGTTTCCCTTGAAA
*
26911 CGAATTTTGTCTCTCTTGAGACAGTTTCCCTTGAAACGAGTTTTGTTTGTA
130 CGAATTTTGTCTCTCTTGAGACAATTTCCCTTGAAACGAGTTTTGTTTGTA
* * *
26962 TTGAGACAGTTTCTCTTGAAACGAATTTTGTCTCTTTTGAGACAGTTTCTCTTGAAACAAATTTT
1 TTGAGACAATTTCTCTTGAAACGAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTG
* * * * *
27027 TTTTGTCTTGAGACAGTTTCTCTTGAAACGAATTTTGTCTCTCTTGAGATAGTTTCCCTTGAAAC
66 GTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTTGTCTCTCTTGAGAAAGTTTCCCTTGAAAC
* *
27092 GAGTTTTGTCTGTCTTGAGACAATTTCCCTTGAAA
131 GAATTTTGTCTCTCTTGAGACAATTTCCCTTGAAA
27127 TAAGAAATGT
Statistics
Matches: 151, Mismatches: 14, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
180 46 0.30
181 105 0.70
ACGTcount: A:0.24, C:0.17, G:0.17, T:0.42
Consensus pattern (180 bp):
TTGAGACAATTTCTCTTGAAACGAATTTTGTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTG
GTCTCTCTTGAGACAGTTTCTCTTGAAACAAATTTTGTCTCTCTTGAGAAAGTTTCCCTTGAAAC
GAATTTTGTCTCTCTTGAGACAATTTCCCTTGAAACGAGTTTTGTTTGTA
Found at i:27974 original size:129 final size:129
Alignment explanation
Indices: 27570--28174 Score: 675
Period size: 129 Copynumber: 4.7 Consensus size: 129
27560 TCACATAAGG
* * * * * *
27570 AGAATGAGGTGGATTGACATTTTTTTGCTCAAATCCATTGCAGAAGGAGTTGGATCAGCGTTAAC
1 AGAAAGAGGTGGATCGACATTTGTTCGTTCAAATCCATTGCAGAAGGAGTTGGATCAGCGTCAAC
* * * * *
27635 TTTTAGCTCGATTCTATCACAAAATGAGGTAGATCAACATCGACATATCGCTCGATTTACATCAC
66 TTTTAGCTCGATTCTATCACAGAAGGAGGTAGATCAACACCGACATATCGTTCGA-TTCCATCAC
* * ** *
27700 AGAAAGAGGTGGATCGACATTTTTTCGCTCAAATCCATCACAGAAGGAGTTGAATCAGCGTCAAC
1 AGAAAGAGGTGGATCGACATTTGTTCGTTCAAATCCATTGCAGAAGGAGTTGGATCAGCGTCAAC
* * *
27765 TTTTTGCTC-ATT-TATAACAGAAGGAGGTAGATCAACACCGACATCTCGTTCGATTCCATCAC
66 TTTTAGCTCGATTCTATCACAGAAGGAGGTAGATCAACACCGACATATCGTTCGATTCCATCAC
* * **
27827 AGAAAGAGGTGGATCGACATTCGTTCGTTCAAATCCATCGCAGAAGGAGTTGGATCAGTATCAAC
1 AGAAAGAGGTGGATCGACATTTGTTCGTTCAAATCCATTGCAGAAGGAGTTGGATCAGCGTCAAC
* * * * * * *
27892 TTTTTGCTC-ATTTTTATCACAGAATGAGGTAGATCAGCACCAACATTTCGTTCGATTCTATCAC
66 TTTTAGCTCGA-TTCTATCACAGAAGGAGGTAGATCAACACCGACATATCGTTCGATTCCATCAC
* * * * * *
27956 AGAAGGAGATGGATCGACATTTGTTC-TCTTAAATCCATTGTAAAAGGAGTTGGATTAGCGTCAA
1 AGAAAGAGGTGGATCGACATTTGTTCGT-TCAAATCCATTGCAGAAGGAGTTGGATCAGCGTCAA
** * * *
28020 CTTTTAGCTCGATTCTATCACAGAAGGAGGTAGATCAGTATCGATATATCGTTTGATTTCCATCA
65 CTTTTAGCTCGATTCTATCACAGAAGGAGGTAGATCAACACCGACATATCGTTCGA-TTCCATCA
28085 C
129 C
* *
28086 AGAAGGAGGTGGATCGACATCTTTATTTTCGCTT-AAATCCATTGCAGAAGGAGTTGGATCAGCG
1 AGAAAGAGGTGGATCGACA---TT-TGTTCG-TTCAAATCCATTGCAGAAGGAGTTGGATCAGCG
*
28150 TCATCTTCTT-GCTCGATTC-ATCACA
61 TCAACTT-TTAGCTCGATTCTATCACA
28175 TATGGAGTTG
Statistics
Matches: 409, Mismatches: 54, Indels: 21
0.85 0.11 0.04
Matches are distributed among these distances:
127 76 0.19
128 38 0.09
129 144 0.35
130 93 0.23
133 8 0.02
134 46 0.11
135 3 0.01
136 1 0.00
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30
Consensus pattern (129 bp):
AGAAAGAGGTGGATCGACATTTGTTCGTTCAAATCCATTGCAGAAGGAGTTGGATCAGCGTCAAC
TTTTAGCTCGATTCTATCACAGAAGGAGGTAGATCAACACCGACATATCGTTCGATTCCATCAC
Found at i:28535 original size:29 final size:30
Alignment explanation
Indices: 28481--28544 Score: 94
Period size: 30 Copynumber: 2.2 Consensus size: 30
28471 CCATTTTTAG
* *
28481 ACACCAACACCTACCACCCCATTTTTTTCA
1 ACACCAACACCCACCACCACATTTTTTTCA
*
28511 ACACCAACACCCACCATCACA-TTTTTTCA
1 ACACCAACACCCACCACCACATTTTTTTCA
28540 ACACC
1 ACACC
28545 CACCATCAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
29 13 0.42
30 18 0.58
ACGTcount: A:0.33, C:0.44, G:0.00, T:0.23
Consensus pattern (30 bp):
ACACCAACACCCACCACCACATTTTTTTCA
Found at i:29400 original size:110 final size:110
Alignment explanation
Indices: 29251--29485 Score: 411
Period size: 110 Copynumber: 2.1 Consensus size: 110
29241 GTTTATACTA
29251 TGGTCAC--TTTTTTTATTTTATTCCGATTATGCATACTGATATTGTTTTATTTTAATTTAGTCA
1 TGGTCACTTTTTTTTTATTTTATTCCGATTATGCATACTGATATTGTTTTATTTTAATTTAGTCA
29314 CTATTAATTTCTGATTTAGCTACAATTATTTTAATTTTTGCATTT
66 CTATTAATTTCTGATTTAGCTACAATTATTTTAATTTTTGCATTT
* * *
29359 TGGTCACTTTTTTTTTATTTTATTCCGATTGTGCATGCTGATTTTGTTTTATTTTAATTTAGTCA
1 TGGTCACTTTTTTTTTATTTTATTCCGATTATGCATACTGATATTGTTTTATTTTAATTTAGTCA
*
29424 CTGTTAATTTCTGATTTAGCTACAATTATTTTAATTTTTGCATTT
66 CTATTAATTTCTGATTTAGCTACAATTATTTTAATTTTTGCATTT
29469 TGGTCACTTTTTATTTT
1 TGGTCACTTTTT-TTTT
29486 TGTTTAGTTA
Statistics
Matches: 120, Mismatches: 4, Indels: 3
0.94 0.03 0.02
Matches are distributed among these distances:
108 7 0.06
110 109 0.91
111 4 0.03
ACGTcount: A:0.21, C:0.11, G:0.11, T:0.57
Consensus pattern (110 bp):
TGGTCACTTTTTTTTTATTTTATTCCGATTATGCATACTGATATTGTTTTATTTTAATTTAGTCA
CTATTAATTTCTGATTTAGCTACAATTATTTTAATTTTTGCATTT
Found at i:34419 original size:42 final size:41
Alignment explanation
Indices: 34353--34459 Score: 115
Period size: 42 Copynumber: 2.6 Consensus size: 41
34343 TTCACAATTT
* * * * *
34353 ATAAGTCCTTCGTGCCATCAGTAAGTCTTTCGAGCATGATG
1 ATAAATCCTTCGGGCCATCAGTAAGCCTTTAGAGCAAGATG
* * *
34394 CTTAAATCCTTCGGGTCATCTGTAAGCCTTTAGAGCAAGATG
1 -ATAAATCCTTCGGGCCATCAGTAAGCCTTTAGAGCAAGATG
* *
34436 ATAAGTCCTTCGGGCCATCCGTAA
1 ATAAATCCTTCGGGCCATCAGTAA
34460 AACCTTCGGG
Statistics
Matches: 53, Mismatches: 12, Indels: 1
0.80 0.18 0.02
Matches are distributed among these distances:
41 20 0.38
42 33 0.62
ACGTcount: A:0.25, C:0.23, G:0.21, T:0.30
Consensus pattern (41 bp):
ATAAATCCTTCGGGCCATCAGTAAGCCTTTAGAGCAAGATG
Found at i:34634 original size:42 final size:42
Alignment explanation
Indices: 34575--34694 Score: 172
Period size: 42 Copynumber: 2.9 Consensus size: 42
34565 AATTTATAAG
34575 TCCTTCGGTCTATCAGTAAGTCTTTCGAGCATGATGCTTAAA
1 TCCTTCGGTCTATCAGTAAGTCTTTCGAGCATGATGCTTAAA
34617 TCCTTCAGG-CTATCAGTAAGTCTTTCGAGCATGATGCTTAAA
1 TCCTTC-GGTCTATCAGTAAGTCTTTCGAGCATGATGCTTAAA
* * * *
34659 TCCTTCGAGTC-ATCTGTAAGCCTTTTGAGCAAGATG
1 TCCTTCG-GTCTATCAGTAAGTCTTTCGAGCATGATG
34695 ACAAGTCTTT
Statistics
Matches: 71, Mismatches: 4, Indels: 6
0.88 0.05 0.07
Matches are distributed among these distances:
41 1 0.01
42 67 0.94
43 3 0.04
ACGTcount: A:0.24, C:0.22, G:0.20, T:0.34
Consensus pattern (42 bp):
TCCTTCGGTCTATCAGTAAGTCTTTCGAGCATGATGCTTAAA
Found at i:37036 original size:2 final size:2
Alignment explanation
Indices: 37029--37066 Score: 76
Period size: 2 Copynumber: 19.0 Consensus size: 2
37019 TTTTGTAGCT
37029 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
37067 AAAGTTGATA
Statistics
Matches: 36, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 36 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:37119 original size:2 final size:2
Alignment explanation
Indices: 37112--37138 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
37102 GTTAATGTGT
37112 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
37139 TGTGTATAAC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:37403 original size:21 final size:20
Alignment explanation
Indices: 37317--37474 Score: 77
Period size: 21 Copynumber: 7.8 Consensus size: 20
37307 AAATGACCAA
**
37317 CAAAATCGCAACGCGA-AAT
1 CAAAATCGCAACGCGATTTT
* ***
37336 AAAAATCGCAACGCGATCCC
1 CAAAATCGCAACGCGATTTT
* ** *
37356 CAGAATCGCAAATC-AGTTTC
1 CAAAATCGCAACGCGA-TTTT
37376 CAAAATCGCAACGCGATTCTT
1 CAAAATCGCAACGCGATT-TT
* * * * *
37397 GAAAATCGCGATGCGATAGTA
1 CAAAATCGCAACGCGAT-TTT
* **
37418 CAAATTCGCATTGCGATTTT
1 CAAAATCGCAACGCGATTTT
* *
37438 CAATAATCGCAACGCGAATAT
1 CAA-AATCGCAACGCGATTTT
*
37459 GAAAATCGCAACGCGA
1 CAAAATCGCAACGCGA
37475 ACACATAAAT
Statistics
Matches: 102, Mismatches: 31, Indels: 11
0.71 0.22 0.08
Matches are distributed among these distances:
19 16 0.16
20 42 0.41
21 44 0.43
ACGTcount: A:0.38, C:0.25, G:0.18, T:0.20
Consensus pattern (20 bp):
CAAAATCGCAACGCGATTTT
Found at i:37467 original size:20 final size:20
Alignment explanation
Indices: 37442--37752 Score: 79
Period size: 20 Copynumber: 15.5 Consensus size: 20
37432 GATTTTCAAT
* *
37442 AATCGCAACGCGAATATGA-A
1 AATCGCAACGCGAACA-CATA
37462 AATCGCAACGCGAACACATA
1 AATCGCAACGCGAACACATA
* *
37482 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
37502 AATCGCAACGTGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* ****
37522 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGAACACATA
* * *
37542 AATCGCAATGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
37562 TATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
** *
37582 AATCGCAACGATAATACATAA
1 AATCGCAACGCGAACACAT-A
* *
37603 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
37623 AATCGCAACGTGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* *
37643 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* * *
37663 AATCGCAATGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
* *
37683 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
** *
37703 AATCGCAACGATAATC-CGTA
1 AATCGCAACGCGAA-CACATA
* *
37723 AATCGCAACGCGTATC-CGTA
1 AATCGCAACGCG-AACACATA
37743 AATCGCAACG
1 AATCGCAACG
37753 ATAATCCGTA
Statistics
Matches: 244, Mismatches: 38, Indels: 18
0.81 0.13 0.06
Matches are distributed among these distances:
19 3 0.01
20 224 0.92
21 16 0.07
22 1 0.00
ACGTcount: A:0.34, C:0.26, G:0.19, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGAACACATA
Found at i:37487 original size:40 final size:40
Alignment explanation
Indices: 37442--37831 Score: 439
Period size: 40 Copynumber: 9.7 Consensus size: 40
37432 GATTTTCAAT
* ** * * *
37442 AATCGCAACGCGAATATGAAAATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGTAAC-CGTA
* *
37482 AATCGCAACGCGTATCCGTAAATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGTAACCGTA
** * * *
37522 AATCGCAACGCGTATGGGTAAATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGTAACCGTA
* * *
37562 TATCGCAACGCGTATCCGTAAATCGCAACGA-TAATACATAA
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGTAA-CCGT-A
* *
37603 AATCGCAACGCGTATCCGTAAATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGTAACCGTA
* * *
37643 AATCGCAACGCGTATCCGTAAATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGTAACCGTA
37683 AATCGCAACGCGTATCCGTAAATCGCAACGA-TAATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGTAA-CCGTA
37723 AATCGCAACGCGTATCCGTAAATCGCAACGA-TAATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGTAA-CCGTA
* * *
37763 AATCGCAACGAGAATCTGTAAATCGCAACGA-TAATCCGTA
1 AATCGCAACGCGTATCCGTAAATCGCAACGAGTAA-CCGTA
* * * *
37803 AATCGCAACGAGAATCTGTAAATCACAAC
1 AATCGCAACGCGTATCCGTAAATCGCAAC
37832 ACTGAAATTT
Statistics
Matches: 312, Mismatches: 33, Indels: 10
0.88 0.09 0.03
Matches are distributed among these distances:
39 4 0.01
40 272 0.87
41 34 0.11
42 2 0.01
ACGTcount: A:0.36, C:0.26, G:0.18, T:0.20
Consensus pattern (40 bp):
AATCGCAACGCGTATCCGTAAATCGCAACGAGTAACCGTA
Found at i:37759 original size:20 final size:19
Alignment explanation
Indices: 37480--37831 Score: 398
Period size: 20 Copynumber: 17.6 Consensus size: 19
37470 CGCGAACACA
37480 TAAATCGCAACGCGTATCCG
1 TAAATCGCAACG-GTATCCG
37500 TAAATCGCAACGTGTATCCG
1 TAAATCGCAACG-GTATCCG
**
37520 TAAATCGCAACGCGTATGGG
1 TAAATCGCAACG-GTATCCG
*
37540 TAAATCGCAATGCGTATCCG
1 TAAATCGCAACG-GTATCCG
*
37560 TATATCGCAACGCGTATCCG
1 TAAATCGCAACG-GTATCCG
* * *
37580 TAAATCGCAACGATAATACA
1 TAAATCGCAACGGT-ATCCG
37600 TAAAATCGCAACGCGTATCCG
1 T-AAATCGCAACG-GTATCCG
37621 TAAATCGCAACGTGTATCCG
1 TAAATCGCAACG-GTATCCG
37641 TAAATCGCAACGCGTATCCG
1 TAAATCGCAACG-GTATCCG
*
37661 TAAATCGCAATGCGTATCCG
1 TAAATCGCAACG-GTATCCG
37681 TAAATCGCAACGCGTATCCG
1 TAAATCGCAACG-GTATCCG
*
37701 TAAATCGCAACGATAATCCG
1 TAAATCGCAACGGT-ATCCG
37721 TAAATCGCAACGCGTATCCG
1 TAAATCGCAACG-GTATCCG
*
37741 TAAATCGCAACGATAATCCG
1 TAAATCGCAACGGT-ATCCG
* *
37761 TAAATCGCAACGAGAATCTG
1 TAAATCGCAACG-GTATCCG
*
37781 TAAATCGCAACGATAATCCG
1 TAAATCGCAACGGT-ATCCG
* *
37801 TAAATCGCAACGAGAATCTG
1 TAAATCGCAACG-GTATCCG
*
37821 TAAATCACAAC
1 TAAATCGCAAC
37832 ACTGAAATTT
Statistics
Matches: 290, Mismatches: 33, Indels: 18
0.85 0.10 0.05
Matches are distributed among these distances:
19 3 0.01
20 270 0.93
21 16 0.06
22 1 0.00
ACGTcount: A:0.35, C:0.26, G:0.18, T:0.21
Consensus pattern (19 bp):
TAAATCGCAACGGTATCCG
Found at i:38546 original size:24 final size:24
Alignment explanation
Indices: 38507--38553 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
38497 AAATTTGGTC
38507 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
38531 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
38554 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:38745 original size:12 final size:12
Alignment explanation
Indices: 38728--38752 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
38718 ATATAATCCT
38728 GAAGAAGAAAAA
1 GAAGAAGAAAAA
38740 GAAGAAGAAAAA
1 GAAGAAGAAAAA
38752 G
1 G
38753 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:41055 original size:19 final size:19
Alignment explanation
Indices: 41033--41306 Score: 354
Period size: 19 Copynumber: 15.4 Consensus size: 19
41023 CGGAAAATAC
*
41033 AATCGCAACGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
41052 AATCCCAA--C---ATGAA
1 AATCGCAATGCGAAATGAA
41066 AATCGCAATGCGGAAATGAA
1 AATCGCAATGC-GAAATGAA
*
41086 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
41100 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
41119 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
41138 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
41152 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
41171 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
41190 AATCGCAATGCGAAATGGA
1 AATCGCAATGCGAAATGAA
41209 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
41228 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
41247 AATCGCAA--CGAAA-G--
1 AATCGCAATGCGAAATGAA
41261 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
41280 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
41299 AATCGCAA
1 AATCGCAA
41307 CGAGATAATC
Statistics
Matches: 226, Mismatches: 8, Indels: 42
0.82 0.03 0.15
Matches are distributed among these distances:
14 40 0.18
15 2 0.01
16 11 0.05
17 10 0.04
18 3 0.01
19 147 0.65
20 13 0.06
ACGTcount: A:0.47, C:0.18, G:0.22, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:41235 original size:109 final size:105
Alignment explanation
Indices: 41061--41328 Score: 459
Period size: 109 Copynumber: 2.5 Consensus size: 105
41051 AAATCCCAAC
41061 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGA-GAATCGCAATGCGAAATGAAAATCGC
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGATGAATCGCAATGCGAAATGAAAATCGC
*
41125 AATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
65 AATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
*
41166 ATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGGAAATCGCAATGCGAAATGAAAAT
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAA--CGAGAT-G-AATCGCAATGCGAAATGAAAAT
41231 CGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
62 CGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
41275 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAT-AATCGCAATGCGAAAT
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGATGAATCGCAATGCGAAAT
41329 TATAAACGCA
Statistics
Matches: 155, Mismatches: 3, Indels: 11
0.92 0.02 0.07
Matches are distributed among these distances:
104 32 0.21
105 16 0.10
106 4 0.03
107 5 0.03
108 1 0.01
109 97 0.63
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.15
Consensus pattern (105 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGATGAATCGCAATGCGAAATGAAAATCGCA
ATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
Found at i:41344 original size:52 final size:52
Alignment explanation
Indices: 41061--41328 Score: 455
Period size: 52 Copynumber: 5.0 Consensus size: 52
41051 AAATCCCAAC
41061 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
41114 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
*
41166 ATGAAAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGGAAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAA--CGAGA--G-AATCGCAATGCGAA
*
41223 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
*
41275 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGATAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
41327 AT
1 AT
41329 TATAAACGCA
Statistics
Matches: 207, Mismatches: 3, Indels: 11
0.94 0.01 0.05
Matches are distributed among these distances:
52 134 0.65
53 17 0.08
54 4 0.02
55 5 0.02
56 1 0.00
57 46 0.22
ACGTcount: A:0.46, C:0.17, G:0.22, T:0.15
Consensus pattern (52 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
Found at i:41425 original size:19 final size:19
Alignment explanation
Indices: 41335--41417 Score: 113
Period size: 20 Copynumber: 4.6 Consensus size: 19
41325 AAATTATAAA
41335 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
41354 CCGCATTGCGATTTTCATTT
1 -CGCATTGCGATTTTCATTT
*
41374 CGCATTGCGA--TTC-TCT
1 CGCATTGCGATTTTCATTT
41390 CG--TTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
41407 CGCATTGCGAT
1 CGCATTGCGAT
41418 AGTCATTTTT
Statistics
Matches: 56, Mismatches: 2, Indels: 11
0.81 0.03 0.16
Matches are distributed among these distances:
14 6 0.11
16 7 0.12
17 7 0.12
19 17 0.30
20 19 0.34
ACGTcount: A:0.14, C:0.24, G:0.18, T:0.43
Consensus pattern (19 bp):
CGCATTGCGATTTTCATTT
Found at i:41543 original size:14 final size:14
Alignment explanation
Indices: 41524--41560 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
41514 CATCAATTAC
41524 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
41538 ACAAATCATCTTTT
1 ACAAATCAACTTTT
41552 ACAAATCAA
1 ACAAATCAA
41561 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:43525 original size:14 final size:14
Alignment explanation
Indices: 43506--43562 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
43496 GCGAAATGAA
*
43506 AATCGCAACGACAG
1 AATCGCAACGAAAG
43520 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
43537 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
43553 AATCGCAACG
1 AATCGCAACG
43563 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:43533 original size:33 final size:33
Alignment explanation
Indices: 43487--43579 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
43477 GCGAAACCAA
*
43487 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
43520 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
43553 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
43580 TGCGATTTTG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.47, C:0.22, G:0.20, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:43544 original size:19 final size:19
Alignment explanation
Indices: 43450--43584 Score: 128
Period size: 19 Copynumber: 7.6 Consensus size: 19
43440 TAGTTTACTT
* *
43450 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
43470 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
43489 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
43508 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
43522 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
43541 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
43555 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
43574 TCGCAATGCGA
1 TCGCAACGCGA
43585 TTTTGGTTTC
Statistics
Matches: 97, Mismatches: 8, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
14 16 0.16
16 11 0.11
17 11 0.11
19 47 0.48
20 12 0.12
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:43602 original size:19 final size:19
Alignment explanation
Indices: 43580--43708 Score: 125
Period size: 19 Copynumber: 7.3 Consensus size: 19
43570 AAAATCGCAA
43580 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
43599 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
43613 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
43632 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
43646 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
43665 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
* *
43684 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
43704 TGCGA
1 TGCGA
43709 AAGTAAACTA
Statistics
Matches: 90, Mismatches: 9, Indels: 21
0.75 0.08 0.17
Matches are distributed among these distances:
14 22 0.24
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 48 0.53
20 13 0.14
ACGTcount: A:0.09, C:0.17, G:0.29, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:43622 original size:33 final size:33
Alignment explanation
Indices: 43580--43671 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
43570 AAAATCGCAA
43580 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
43613 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
43646 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
43672 TTGGTTTCGC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 54 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.18, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:44060 original size:182 final size:186
Alignment explanation
Indices: 43752--44128 Score: 717
Period size: 182 Copynumber: 2.0 Consensus size: 186
43742 TTGAATGGAT
43752 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
43817 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGAC-AA
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
43881 -A-TATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
131 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
43935 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATACAC
1 AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
43999 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
66 AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
*
44064 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAT
131 TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
44120 AAATTTACT
1 AAATTTACT
44129 AAGCAATCTA
Statistics
Matches: 190, Mismatches: 1, Indels: 4
0.97 0.01 0.02
Matches are distributed among these distances:
182 87 0.46
183 41 0.22
184 1 0.01
185 61 0.32
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (186 bp):
AAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACAC
AGTTTAGCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAA
TACTATTTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAAC
Found at i:45850 original size:14 final size:14
Alignment explanation
Indices: 45831--45920 Score: 81
Period size: 14 Copynumber: 5.7 Consensus size: 14
45821 TTGAAATGAA
45831 AATCGCAACGAGAG
1 AATCGCAACGAGAG
45845 AATCGCAACGCGAGATG
1 AATCGCAA--CGAGA-G
45862 ACAATCGCAACGAGAG
1 --AATCGCAACGAGAG
*
45878 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
45897 AATCGCAACGAGAG
1 AATCGCAACGAGAG
45911 AATCGCAACG
1 AATCGCAACG
45921 CGAAATGAAA
Statistics
Matches: 64, Mismatches: 2, Indels: 20
0.74 0.02 0.23
Matches are distributed among these distances:
14 28 0.44
15 1 0.02
16 8 0.12
17 8 0.12
18 1 0.02
19 18 0.28
ACGTcount: A:0.42, C:0.23, G:0.26, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:45868 original size:33 final size:33
Alignment explanation
Indices: 45823--45937 Score: 212
Period size: 33 Copynumber: 3.5 Consensus size: 33
45813 TCTTTTGGTT
45823 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
45856 GAGATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
45889 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
45922 GAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
45938 TGCGATTTTG
Statistics
Matches: 78, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 78 1.00
ACGTcount: A:0.45, C:0.21, G:0.24, T:0.10
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:45869 original size:19 final size:18
Alignment explanation
Indices: 45830--45942 Score: 88
Period size: 19 Copynumber: 6.8 Consensus size: 18
45820 GTTGAAATGA
45830 AAATCGCAA--CGAGA-G
1 AAATCGCAACGCGAGATG
45845 -AATCGCAACGCGAGATG
1 AAATCGCAACGCGAGATG
45862 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
45878 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
45895 AAAATCGCAA--CGAGA-G
1 -AAATCGCAACGCGAGATG
*
45911 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
*
45928 AAAATCGCAATGCGA
1 -AAATCGCAACGCGA
45943 TTTTGGTTTC
Statistics
Matches: 79, Mismatches: 4, Indels: 26
0.72 0.04 0.24
Matches are distributed among these distances:
14 24 0.30
16 15 0.19
17 12 0.15
19 28 0.35
ACGTcount: A:0.43, C:0.22, G:0.25, T:0.10
Consensus pattern (18 bp):
AAATCGCAACGCGAGATG
Found at i:45973 original size:14 final size:14
Alignment explanation
Indices: 45954--46008 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
45944 TTTGGTTTCG
45954 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
45968 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
45987 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
46001 CGTTGCGA
1 CGTTGCGA
46009 CAGTCATTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
16 3 0.09
17 3 0.09
19 10 0.29
ACGTcount: A:0.09, C:0.25, G:0.24, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:45986 original size:33 final size:33
Alignment explanation
Indices: 45938--46008 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
45928 AAAATCGCAA
**
45938 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
45971 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
46004 TGCGA
1 TGCGA
46009 CAGTCATTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.08, C:0.23, G:0.25, T:0.44
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:46016 original size:33 final size:33
Alignment explanation
Indices: 45949--46030 Score: 119
Period size: 33 Copynumber: 2.5 Consensus size: 33
45939 GCGATTTTGG
***
45949 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
45982 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
*
46015 TTCTCTCGTTGCGATT
1 TT-TCGCGTTGCGATT
46031 TTCATTTATC
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
33 32 0.73
34 12 0.27
ACGTcount: A:0.10, C:0.26, G:0.22, T:0.43
Consensus pattern (33 bp):
TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
Found at i:46035 original size:20 final size:20
Alignment explanation
Indices: 45961--46049 Score: 75
Period size: 20 Copynumber: 4.8 Consensus size: 20
45951 TCGCGTTGCG
45961 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
45981 ATT-TCGCGTTGCG------
1 ATTCTCTCGTTGCGATTTTC
***
45994 ATTCTCTCGTTGCGACAGTC
1 ATTCTCTCGTTGCGATTTTC
46014 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
46034 ATTTATCTCGTTGCGA
1 A-TTCTCTCGTTGCGA
46050 CTCTTCTGCA
Statistics
Matches: 55, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
13 3 0.05
14 9 0.16
19 9 0.16
20 21 0.38
21 13 0.24
ACGTcount: A:0.12, C:0.25, G:0.19, T:0.44
Consensus pattern (20 bp):
ATTCTCTCGTTGCGATTTTC
Found at i:46171 original size:33 final size:33
Alignment explanation
Indices: 46129--46199 Score: 115
Period size: 33 Copynumber: 2.2 Consensus size: 33
46119 AATACTAACT
46129 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
***
46162 TGAAAATCGCAACGAGAGAATCTTAACGCGAAA
1 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
46195 TGAAA
1 TGAAA
46200 TCTAAGTGAA
Statistics
Matches: 35, Mismatches: 3, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
33 35 1.00
ACGTcount: A:0.48, C:0.17, G:0.23, T:0.13
Consensus pattern (33 bp):
TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
Found at i:46432 original size:22 final size:22
Alignment explanation
Indices: 46380--46434 Score: 74
Period size: 22 Copynumber: 2.5 Consensus size: 22
46370 TGGTTGTGAG
**
46380 GGATTTCGCCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
**
46402 GGAAATCTTCGGAGATGGGGAC
1 GGATTTCTTCGGAGATGGGGAC
46424 GGATTTCTTCG
1 GGATTTCTTCG
46435 CCGTAGAGAG
Statistics
Matches: 27, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
22 27 1.00
ACGTcount: A:0.20, C:0.16, G:0.40, T:0.24
Consensus pattern (22 bp):
GGATTTCTTCGGAGATGGGGAC
Found at i:46605 original size:20 final size:20
Alignment explanation
Indices: 46580--46772 Score: 219
Period size: 20 Copynumber: 9.6 Consensus size: 20
46570 CTTTAAATAT
46580 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
46600 CGCGTTGCGATTTTATGTATTA
1 CGCGTTGCGA-TTTACGGA-TA
*
46622 -TCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
46641 CGCGTTGCGATATACGGATA
1 CGCGTTGCGATTTACGGATA
* **
46661 CGCATTGCGATTTACCCATA
1 CGCGTTGCGATTTACGGATA
46681 CGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
*
46701 CACGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATA
* *
46721 CGCGTTGCGATTTATGTG-TT
1 CGCGTTGCGATTTACG-GATA
* ** *
46741 CGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATA
46761 CGCGTTGCGATT
1 CGCGTTGCGATT
46773 ATTGAAAATC
Statistics
Matches: 146, Mismatches: 22, Indels: 10
0.82 0.12 0.06
Matches are distributed among these distances:
19 2 0.01
20 127 0.87
21 15 0.10
22 2 0.01
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.35
Consensus pattern (20 bp):
CGCGTTGCGATTTACGGATA
Found at i:46767 original size:60 final size:60
Alignment explanation
Indices: 46580--46772 Score: 251
Period size: 60 Copynumber: 3.2 Consensus size: 60
46570 CTTTAAATAT
**
46580 CGCGTTGCGATTTACGGATACGCGTTGCGATTTTATGTATTATCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGA-TTTATGTATTCGCGTTGCGATTTACGGATA
* * *** *
46641 CGCGTTGCGATATACGGATACGCATTGCGATTTACCCATACGCGTTGCGATTTACGGATA
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
* * * ** *
46701 CACGTTGCGATTTACGGATACGCGTTGCGATTTATGTGTTCGCGTTGCGATTTTCATATT
1 CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
46761 CGCGTTGCGATT
1 CGCGTTGCGATT
46773 ATTGAAAATC
Statistics
Matches: 111, Mismatches: 21, Indels: 1
0.83 0.16 0.01
Matches are distributed among these distances:
60 83 0.75
61 28 0.25
ACGTcount: A:0.19, C:0.20, G:0.26, T:0.35
Consensus pattern (60 bp):
CGCGTTGCGATTTACGGATACGCGTTGCGATTTATGTATTCGCGTTGCGATTTACGGATA
Found at i:47054 original size:2 final size:2
Alignment explanation
Indices: 47049--47088 Score: 80
Period size: 2 Copynumber: 20.0 Consensus size: 2
47039 ATATTAAAGG
47049 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
47089 ACATGGTAAT
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 38 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:49020 original size:17 final size:17
Alignment explanation
Indices: 48994--49042 Score: 89
Period size: 17 Copynumber: 2.9 Consensus size: 17
48984 ATACAAAAAA
*
48994 TTAAACAAATTATTTGT
1 TTAAATAAATTATTTGT
49011 TTAAATAAATTATTTGT
1 TTAAATAAATTATTTGT
49028 TTAAATAAATTATTT
1 TTAAATAAATTATTT
49043 TTTCTTTAAC
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
17 31 1.00
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (17 bp):
TTAAATAAATTATTTGT
Found at i:49180 original size:26 final size:27
Alignment explanation
Indices: 49118--49180 Score: 83
Period size: 26 Copynumber: 2.4 Consensus size: 27
49108 AATCGGTTAA
* *
49118 TAATTTTAAAATAAATTTTGGTTCGAT
1 TAATGTTAAAATAAATTTCGGTTCGAT
* *
49145 TAACGGTAAAAT-AATTTCGGTTCGAT
1 TAATGTTAAAATAAATTTCGGTTCGAT
49171 TAATGTTAAA
1 TAATGTTAAA
49181 GAAAAAAATT
Statistics
Matches: 30, Mismatches: 6, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
26 21 0.70
27 9 0.30
ACGTcount: A:0.38, C:0.06, G:0.14, T:0.41
Consensus pattern (27 bp):
TAATGTTAAAATAAATTTCGGTTCGAT
Found at i:49217 original size:94 final size:96
Alignment explanation
Indices: 49110--49341 Score: 362
Period size: 94 Copynumber: 2.4 Consensus size: 96
49100 TAACCGTTAA
*
49110 TCGGTTAATAATTTTAAAATAAATTTTGGTTCGATTAACGGTAAAATAATTTCGGTTCGATTAAT
1 TCGGTTAATAATTTTAAAATAAATTTCGGTTCGATTAACGGTAAAATAATTTCGGTTCGATTAAT
* *
49175 -GTTAAAG-AAAAAAATTC-GATTAATTTGGT
66 GGTTAAAGAAAAAAAATTCAG-TTAATTCGAT
* * * *
49204 TCGGTTAATAATTTTCAAATAAATTTCGGTTTGATTAGCGGTCAAATAATTTCGGTTCGATTAAT
1 TCGGTTAATAATTTTAAAATAAATTTCGGTTCGATTAACGGTAAAATAATTTCGGTTCGATTAAT
49269 GGTTAAAGAAAAAAAATTCAGTTAATTCGAT
66 GGTTAAAGAAAAAAAATTCAGTTAATTCGAT
*
49300 TCGGTTAATAATTTTTAAATAAATTTCGGTTCGATTAACGGT
1 TCGGTTAATAATTTTAAAATAAATTTCGGTTCGATTAACGGT
49342 TAAGGAAAAA
Statistics
Matches: 125, Mismatches: 10, Indels: 4
0.90 0.07 0.03
Matches are distributed among these distances:
94 60 0.48
95 7 0.06
96 57 0.46
97 1 0.01
ACGTcount: A:0.36, C:0.08, G:0.16, T:0.39
Consensus pattern (96 bp):
TCGGTTAATAATTTTAAAATAAATTTCGGTTCGATTAACGGTAAAATAATTTCGGTTCGATTAAT
GGTTAAAGAAAAAAAATTCAGTTAATTCGAT
Found at i:49325 original size:70 final size:66
Alignment explanation
Indices: 49247--49407 Score: 200
Period size: 66 Copynumber: 2.4 Consensus size: 66
49237 ATTAGCGGTC
*
49247 AAAT-AATTTCGGTTCGATTAATGGTTAAAGAAAAAA-AATTCAGTTAATTCGATTCGGTTAATA
1 AAATAAATTTCGGTTCGATTAACGGTTAAAGAAAAAATAA-T---TTAATT-GATTCGGTTAATA
49310 ATTTTT
61 ATTTTT
* * *
49316 AAATAAATTTCGGTTCGATTAACGGTTAAGGAAAAAATAATTTAATTTATTCGTTTAATAATTTT
1 AAATAAATTTCGGTTCGATTAACGGTTAAAGAAAAAATAATTTAATTGATTCGGTTAATAATTTT
49381 T
66 T
* * *
49382 AAATAAATTTTGATTTGATTAACGGT
1 AAATAAATTTCGGTTCGATTAACGGT
49408 CAAATAATTT
Statistics
Matches: 83, Mismatches: 7, Indels: 7
0.86 0.07 0.07
Matches are distributed among these distances:
66 40 0.48
67 6 0.07
69 4 0.05
70 31 0.37
71 2 0.02
ACGTcount: A:0.39, C:0.06, G:0.14, T:0.41
Consensus pattern (66 bp):
AAATAAATTTCGGTTCGATTAACGGTTAAAGAAAAAATAATTTAATTGATTCGGTTAATAATTTT
T
Found at i:49401 original size:162 final size:162
Alignment explanation
Indices: 49153--49618 Score: 557
Period size: 162 Copynumber: 2.8 Consensus size: 162
49143 ATTAACGGTA
* * * *
49153 AAAT-AATTTCGGTTCGATTAA-TGTTAAAGAAAAAA-ATTCGATTAATTTGGTTCGGTTAATAA
1 AAATAAATTTCGGTTCGATTAACGGTTAAAGAAAAAATAAT---TTAATTT-ATTCGTTTAATAA
*
49215 TTTTCAAATAAATTTCGGTTTGATTAGCGGTCAAATAATTTCGGTTCGATTAATGGTTAAAGAAA
62 TTTTCAAATAAATTTCGGTTTGATTAACGGTCAAATAATTTCGGTTCGATTAATGGTTAAAGAAA
*
49280 AAAAATTCAGTTAATTCGATTCGGTTAATAATTTTT
127 AAAAATTCAGTTAATTCGATTCGGTTAATAATTTTC
*
49316 AAATAAATTTCGGTTCGATTAACGGTTAAGGAAAAAATAATTTAATTTATTCGTTTAATAATTTT
1 AAATAAATTTCGGTTCGATTAACGGTTAAAGAAAAAATAATTTAATTTATTCGTTTAATAATTTT
* * * * * *
49381 TAAATAAATTTTGATTTGATTAACGGTCAAATAATTTCGGTTTGATTAATGATTAAAGAACAAAA
66 CAAATAAATTTCGGTTTGATTAACGGTCAAATAATTTCGGTTCGATTAATGGTTAAAGAAAAAAA
* * * *
49446 A-TCGGTTGATTTGGTTCGGTTAATAATTTTC
131 ATTCAGTTAATTCGATTCGGTTAATAATTTTC
* *
49477 AAATAAATTTTGGTTCGATTAACGATTAAAG-AAAAATAATTT-ATATTATTCAGTTAATTCAGT
1 AAATAAATTTCGGTTCGATTAACGGTTAAAGAAAAAATAATTTAAT-TTATTC-G-----T---T
* * * *
49540 TAATAATTTTCAAATAAATTTGGGTTCGATTAACGGTCAAATAATTTTGATTCGATTAATGGTTA
56 TAATAATTTTCAAATAAATTTCGGTTTGATTAACGGTCAAATAATTTCGGTTCGATTAATGGTTA
49605 AAGAAAAAAAATTC
121 AAGAAAAAAAATTC
49619 GATTAATAAT
Statistics
Matches: 260, Mismatches: 29, Indels: 21
0.84 0.09 0.07
Matches are distributed among these distances:
159 2 0.01
160 17 0.07
161 54 0.21
162 74 0.28
163 11 0.04
164 17 0.07
165 12 0.05
166 3 0.01
169 68 0.26
170 2 0.01
ACGTcount: A:0.39, C:0.07, G:0.15, T:0.39
Consensus pattern (162 bp):
AAATAAATTTCGGTTCGATTAACGGTTAAAGAAAAAATAATTTAATTTATTCGTTTAATAATTTT
CAAATAAATTTCGGTTTGATTAACGGTCAAATAATTTCGGTTCGATTAATGGTTAAAGAAAAAAA
ATTCAGTTAATTCGATTCGGTTAATAATTTTC
Found at i:49676 original size:82 final size:79
Alignment explanation
Indices: 49539--49703 Score: 267
Period size: 82 Copynumber: 2.1 Consensus size: 79
49529 GTTAATTCAG
* *
49539 TTAATAATTTTCAAATAAATTTGGGTTCGATTAACGGTCAAATAATTTTGATTCGATTAATGGTT
1 TTAATAATTTTCAAATAAATTTCGGTTCGATTAACGGTCAAATAATTTCGATTCGATTAAT-GTT
49604 AAAGAAAAAAAATTCGA
65 -AAG-AAAAAAATTCGA
*
49621 TTAATAATTTTCAAATAAATTTCGGTTCGATTAACGGTCAAATAATTTCGGTTCGATTAATGTTA
1 TTAATAATTTTCAAATAAATTTCGGTTCGATTAACGGTCAAATAATTTCGATTCGATTAATGTTA
*
49686 AGAAAAAAATTCGG
66 AGAAAAAAATTCGA
49700 TTAA
1 TTAA
49704 ATTTTGGATC
Statistics
Matches: 79, Mismatches: 4, Indels: 3
0.92 0.05 0.03
Matches are distributed among these distances:
79 15 0.19
80 3 0.04
81 3 0.04
82 58 0.73
ACGTcount: A:0.40, C:0.08, G:0.15, T:0.37
Consensus pattern (79 bp):
TTAATAATTTTCAAATAAATTTCGGTTCGATTAACGGTCAAATAATTTCGATTCGATTAATGTTA
AGAAAAAAATTCGA
Found at i:49772 original size:65 final size:65
Alignment explanation
Indices: 49636--49769 Score: 169
Period size: 65 Copynumber: 2.0 Consensus size: 65
49626 AATTTTCAAA
* * *
49636 TAAATTTCGGTTCGATTAACGGTCAAATAATTTCGGTTCGATTAATGTTAAGAAAAAAATTCGGT
1 TAAATTTCGGATCGATTAACGGTCAAATAATTTCGGTTCGATTAATCTTAACAAAAAAATTCGGT
* * * ** * *
49701 TAAATTTTGGATCGATTAATGGTCAAATAATTTCGGTTCGGTTAATACTTTTCAAATAAATTTGG
1 TAAATTTCGGATCGATTAACGGTCAAATAATTTCGGTTCGATTAAT-CTTAACAAAAAAATTCGG
49766 T
65 T
49767 TAA
1 TAA
49770 TTTGGTTTAT
Statistics
Matches: 58, Mismatches: 10, Indels: 1
0.84 0.14 0.01
Matches are distributed among these distances:
65 42 0.72
66 16 0.28
ACGTcount: A:0.34, C:0.10, G:0.17, T:0.39
Consensus pattern (65 bp):
TAAATTTCGGATCGATTAACGGTCAAATAATTTCGGTTCGATTAATCTTAACAAAAAAATTCGGT
Found at i:50021 original size:81 final size:80
Alignment explanation
Indices: 49886--50056 Score: 256
Period size: 81 Copynumber: 2.1 Consensus size: 80
49876 TTATTCAGTT
* **
49886 AATTCGATTAATAATTTTCAAATAAATTTGGATTCAATTAAAGGCCAAATAATTTTGGTTCGATT
1 AATTCGGTTAATAATTTTCAAATAAATTTGGATTCAATTAAAGGCCAAATAATTTCAGTTCGATT
49951 AATGGTTAAAGAAAAA
66 AAT-GTTAAAGAAAAA
* * *
49967 AATTCGGTTAATAATTTTCAAATAAATTTTGG-TTCGATTAACGGTCAAATAATTTCAGTTCGAT
1 AATTCGGTTAATAATTTTCAAATAAA-TTTGGATTCAATTAAAGGCCAAATAATTTCAGTTCGAT
50031 TAATGTTAAAGAAAAA
65 TAATGTTAAAGAAAAA
50047 AA-TCGGTTAA
1 AATTCGGTTAA
50057 CTTGGTTCGG
Statistics
Matches: 83, Mismatches: 6, Indels: 4
0.89 0.06 0.04
Matches are distributed among these distances:
79 8 0.10
80 14 0.17
81 56 0.67
82 5 0.06
ACGTcount: A:0.42, C:0.08, G:0.14, T:0.36
Consensus pattern (80 bp):
AATTCGGTTAATAATTTTCAAATAAATTTGGATTCAATTAAAGGCCAAATAATTTCAGTTCGATT
AATGTTAAAGAAAAA
Found at i:55359 original size:26 final size:26
Alignment explanation
Indices: 55317--55414 Score: 80
Period size: 26 Copynumber: 3.8 Consensus size: 26
55307 GATTTGAGAG
* *
55317 ATAAATTTTTAAGATTTTAAAAATAA
1 ATAAATTTATAAAATTTTAAAAATAA
55343 ATAAATTTATAAAATTTTAAAAGAATAA
1 ATAAATTTATAAAATTTT-AAA-AATAA
* **
55371 A-AATATTTA-AAAA-TATAAAAATGTG
1 ATAA-ATTTATAAAATTTTAAAAAT-AA
55396 AT-AATTT-TAAAATTTTAAA
1 ATAAATTTATAAAATTTTAAA
55415 GACGGTAATT
Statistics
Matches: 59, Mismatches: 6, Indels: 15
0.74 0.08 0.19
Matches are distributed among these distances:
24 11 0.19
25 10 0.17
26 18 0.31
27 9 0.15
28 11 0.19
ACGTcount: A:0.57, C:0.00, G:0.04, T:0.39
Consensus pattern (26 bp):
ATAAATTTATAAAATTTTAAAAATAA
Found at i:55381 original size:18 final size:17
Alignment explanation
Indices: 55353--55392 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 17
55343 ATAAATTTAT
55353 AAAATTTTAAAAGA-ATA
1 AAAATTTTAAAA-ATATA
55370 AAAATATTTAAAAATATA
1 AAAAT-TTTAAAAATATA
55388 AAAAT
1 AAAAT
55393 GTGATAATTT
Statistics
Matches: 21, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
17 6 0.29
18 15 0.71
ACGTcount: A:0.68, C:0.00, G:0.03, T:0.30
Consensus pattern (17 bp):
AAAATTTTAAAAATATA
Found at i:59356 original size:18 final size:17
Alignment explanation
Indices: 59329--59372 Score: 56
Period size: 15 Copynumber: 2.6 Consensus size: 17
59319 ATTATCTATG
*
59329 TCCCGTAGGACCACTACA
1 TCCCGAAGGA-CACTACA
59347 TCCCGAAGG--ACTACA
1 TCCCGAAGGACACTACA
59362 TCCCGAAGGAC
1 TCCCGAAGGAC
59373 TATTATACCC
Statistics
Matches: 23, Mismatches: 1, Indels: 5
0.79 0.03 0.17
Matches are distributed among these distances:
15 15 0.65
18 8 0.35
ACGTcount: A:0.30, C:0.36, G:0.20, T:0.14
Consensus pattern (17 bp):
TCCCGAAGGACACTACA
Found at i:59361 original size:15 final size:15
Alignment explanation
Indices: 59341--59374 Score: 68
Period size: 15 Copynumber: 2.3 Consensus size: 15
59331 CCGTAGGACC
59341 ACTACATCCCGAAGG
1 ACTACATCCCGAAGG
59356 ACTACATCCCGAAGG
1 ACTACATCCCGAAGG
59371 ACTA
1 ACTA
59375 TTATACCCTC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 19 1.00
ACGTcount: A:0.35, C:0.32, G:0.18, T:0.15
Consensus pattern (15 bp):
ACTACATCCCGAAGG
Found at i:59523 original size:23 final size:26
Alignment explanation
Indices: 59489--59536 Score: 75
Period size: 23 Copynumber: 2.0 Consensus size: 26
59479 TCTTGTGATC
59489 ATGTATCTCATATCAC-T-TCATATT
1 ATGTATCTCATATCACATGTCATATT
59513 ATGT-TCTCATATCACATGTCATAT
1 ATGTATCTCATATCACATGTCATAT
59537 CACATATCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
23 11 0.50
24 5 0.23
25 6 0.27
ACGTcount: A:0.29, C:0.21, G:0.06, T:0.44
Consensus pattern (26 bp):
ATGTATCTCATATCACATGTCATATT
Found at i:59536 original size:12 final size:12
Alignment explanation
Indices: 59519--59554 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
59509 TATTATGTTC
59519 TCATATCACATG
1 TCATATCACATG
*
59531 TCATATCACATA
1 TCATATCACATG
59543 TCATATCACATG
1 TCATATCACATG
59555 AACATATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (12 bp):
TCATATCACATG
Found at i:65293 original size:23 final size:26
Alignment explanation
Indices: 65256--65324 Score: 85
Period size: 24 Copynumber: 2.8 Consensus size: 26
65246 TTCTCTTGTG
65256 ATCATGTATCTCATATCAC-T-TCAT
1 ATCATGTATCTCATATCACATGTCAT
65280 ATCATGT-TCTCATATCACATGTCAT
1 ATCATGTATCTCATATCACATGTCAT
* *
65305 ATCA--CATATCATATCACATG
1 ATCATGTATCTCATATCACATG
65325 AACATATATA
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
23 11 0.28
24 21 0.52
25 8 0.20
ACGTcount: A:0.32, C:0.25, G:0.06, T:0.38
Consensus pattern (26 bp):
ATCATGTATCTCATATCACATGTCAT
Found at i:65306 original size:12 final size:12
Alignment explanation
Indices: 65289--65324 Score: 63
Period size: 12 Copynumber: 3.0 Consensus size: 12
65279 TATCATGTTC
65289 TCATATCACATG
1 TCATATCACATG
*
65301 TCATATCACATA
1 TCATATCACATG
65313 TCATATCACATG
1 TCATATCACATG
65325 AACATATATA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
12 22 1.00
ACGTcount: A:0.36, C:0.25, G:0.06, T:0.33
Consensus pattern (12 bp):
TCATATCACATG
Done.