genome.fa.s183.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000183.1 Hibiscus syriacus cultivar Beakdansim tig00000324_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109555

Tables:   1   

This is table  1  of  1  ( 102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
196--239	2	23.0	2	90	9	74	52	0	0	47	1.00
196--239	19	2.3	19	100	0	88	52	0	0	47	1.00
1626--1662	18	2.1	18	100	0	74	35	32	21	10	1.88
6836--6888	21	2.5	21	75	6	54	20	22	18	37	1.94
6918--7032	20	5.7	20	84	6	133	32	26	18	22	1.97
6916--7052	41	3.4	40	83	6	177	34	25	17	22	1.96
7217--7291	28	2.7	28	97	0	141	24	49	9	17	1.75
7557--7615	20	3.0	20	87	0	73	15	18	22	44	1.87
7752--7806	25	2.2	24	78	15	58	20	9	18	52	1.71
8931--8974	18	2.4	18	84	0	70	27	45	9	18	1.79
9484--9539	20	2.8	20	81	2	69	39	21	23	16	1.92
9528--9586	14	3.9	14	74	20	55	47	23	16	11	1.80
9512--9591	33	2.4	33	95	0	142	46	22	18	12	1.83
9512--9570	19	3.4	19	73	22	74	45	20	18	15	1.85
9634--9720	20	4.4	20	82	1	104	14	22	22	39	1.91
9666--9746	20	4.1	19	82	6	72	20	18	24	35	1.95
9659--9740	40	2.0	40	83	4	103	18	20	25	35	1.95
10028--10095	21	3.3	20	74	8	66	27	39	13	19	1.89
10021--10098	42	1.9	40	92	5	129	25	42	12	19	1.87
10021--10106	40	2.1	40	89	4	127	25	40	12	20	1.88
11464--11502	14	2.8	14	84	0	51	35	0	17	46	1.49
11629--11682	14	3.5	14	75	22	54	46	20	22	11	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11642--11687	14	2.8	17	75	25	53	45	19	21	13	1.84
11706--11763	20	2.9	20	86	0	89	12	22	25	39	1.89
12117--12184	20	3.4	20	95	0	118	27	20	29	22	1.98
12117--12216	20	4.9	20	83	7	112	25	19	27	29	1.98
12256--12317	21	3.0	20	81	9	70	32	16	27	24	1.96
13396--13429	15	2.2	16	89	5	52	23	0	26	50	1.50
13619--13661	20	2.1	21	87	12	63	48	2	0	48	1.14
23426--23483	19	3.1	18	76	16	64	67	1	8	22	1.27
23589--23627	12	3.0	13	85	11	53	74	0	2	23	0.94
23542--23619	17	4.4	17	70	12	50	71	1	3	23	1.09
23784--23809	13	2.0	13	100	0	52	69	0	7	23	1.14
23895--23938	23	1.9	23	86	9	63	68	4	0	27	1.09
24332--24435	37	2.8	37	86	0	136	31	11	14	42	1.81
25186--26460	106	12.0	106	92	0	1971	22	18	25	33	1.96
28056--28116	16	3.8	16	76	18	54	1	11	6	80	0.97
32521--32568	21	2.3	20	83	16	62	72	0	2	25	0.95
32522--32574	22	2.4	23	81	12	67	73	0	1	24	0.93
32536--32594	26	2.3	25	85	8	75	71	0	0	28	0.87
32648--32726	30	2.6	30	78	13	74	63	5	3	27	1.33
32661--32717	30	2.0	29	86	6	80	61	7	3	28	1.39
32662--32724	30	2.2	30	82	5	76	61	4	4	28	1.36
32780--32850	3	23.0	3	86	11	67	64	0	1	33	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33327--33428	37	2.8	37	86	0	132	31	13	14	40	1.85
47200--47284	43	2.0	41	93	6	145	18	23	10	47	1.80
47940--47971	14	2.3	14	100	0	64	6	15	28	50	1.68
49067--49133	16	4.3	16	86	3	84	11	8	17	61	1.56
49065--49125	32	1.9	32	89	0	95	9	11	21	57	1.62
49077--49129	26	2.0	26	85	7	72	11	9	18	60	1.57
49224--49255	14	2.3	14	100	0	64	6	15	28	50	1.68
50352--50418	16	4.3	16	86	3	84	11	8	17	61	1.56
50350--50410	32	1.9	32	89	0	95	9	11	21	57	1.62
50362--50414	26	2.0	26	85	7	72	11	9	18	60	1.57
50487--50521	16	2.4	14	90	9	52	17	8	11	62	1.52
50859--50915	22	2.5	22	72	10	53	40	45	3	10	1.56
53749--53877	45	2.8	48	80	11	126	45	0	3	49	1.25
55623--55682	23	2.6	23	81	5	68	41	6	13	38	1.70
55722--55792	23	3.1	23	93	0	106	40	7	19	32	1.79
55623--55876	110	2.3	109	87	4	357	44	9	11	33	1.74
55533--55769	87	2.7	86	89	2	357	44	10	11	33	1.76
55742--55974	87	2.7	87	87	2	351	43	11	13	32	1.79
55829--55876	23	2.1	23	88	0	69	45	8	10	35	1.68
55536--55966	197	2.2	197	90	0	675	44	10	12	32	1.77
55916--55966	23	2.2	23	89	0	75	37	9	21	31	1.86
56490--56545	24	2.4	23	83	16	80	57	3	0	39	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56545--56987	200	2.2	197	84	4	552	30	13	14	41	1.84
57088--57120	13	2.4	14	90	5	50	48	0	0	51	1.00
57192--57256	23	2.6	25	75	20	73	46	0	0	53	1.00
57192--57258	24	2.8	24	82	13	77	44	0	0	55	0.99
57191--57253	22	2.9	22	81	11	76	46	0	0	53	1.00
57661--57720	31	1.9	31	89	0	93	38	18	5	38	1.73
61352--61468	60	2.0	60	82	3	146	6	31	13	47	1.69
61418--61466	24	2.0	24	84	0	62	4	30	16	48	1.64
61323--61499	84	2.1	84	78	4	187	6	31	13	48	1.68
61912--62144	39	6.0	39	84	0	277	23	21	18	37	1.94
61912--62144	78	3.0	78	89	0	331	23	21	18	37	1.94
61912--62144	117	2.0	117	85	0	313	23	21	18	37	1.94
62262--62477	39	5.5	39	81	7	177	16	28	19	35	1.93
62573--63006	216	2.0	216	100	0	868	23	23	28	24	2.00
64716--64768	2	27.5	2	81	14	67	50	1	0	47	1.12
65182--65220	17	2.4	17	87	12	55	46	0	0	53	1.00
68609--68718	55	2.0	55	100	0	220	36	16	18	29	1.92
68725--68752	2	14.0	2	100	0	56	0	50	0	50	1.00
73640--73680	21	2.0	21	90	0	64	43	21	0	34	1.53
86428--86585	20	7.8	20	81	2	190	15	21	22	40	1.91
86452--86525	21	3.6	21	74	3	87	21	18	25	33	1.96
86432--86588	41	3.9	41	90	1	244	15	21	22	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86428--86588	61	2.6	61	79	3	198	16	21	22	40	1.91
86577--86648	22	3.4	21	73	11	76	18	18	25	38	1.92
86432--86588	81	1.9	82	89	1	244	15	21	22	40	1.91
86598--86663	19	3.3	19	72	12	69	18	19	21	40	1.91
86476--86626	81	1.9	80	86	8	216	15	21	22	41	1.90
86557--86670	41	2.8	41	91	4	176	17	18	22	41	1.90
86428--86663	122	1.9	120	81	10	282	16	20	22	40	1.91
87351--87562	41	5.0	41	73	14	128	36	24	19	19	1.95
87456--87553	20	4.8	21	67	14	78	38	26	16	18	1.91
97351--97418	24	2.8	24	90	0	109	19	25	26	29	1.98
97532--97597	24	2.8	24	86	2	98	21	25	25	27	1.99
99920--99957	20	1.9	20	88	0	58	10	31	34	23	1.89
99984--100025	21	2.0	21	85	0	57	16	26	28	28	1.97
108317--108356	12	3.3	12	78	0	53	50	0	45	5	1.23

Tables:   1

The End!