Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001830.1 Hibiscus syriacus cultivar Beakdansim tig00003700_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86082

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3250--3292
20
2.2
20
86
0
59
30
13
20
34
1.92
17802--17864
31
2.0
31
84
0
81
23
4
33
38
1.76
19500--19608
52
2.1
52
89
0
164
22
13
25
38
1.91
19500--19591
26
3.5
26
91
5
150
20
14
27
38
1.91
33232--33282
20
2.5
20
90
0
84
27
13
25
33
1.94
33430--33469
19
2.1
19
86
9
55
57
7
2
32
1.40
37078--37134
26
2.2
26
96
0
105
21
14
29
35
1.92
43989--44035
17
2.8
17
81
12
60
53
0
0
46
1.00
44393--44529
71
1.9
71
91
2
222
32
23
10
33
1.88
45350--45399
22
2.3
22
92
0
82
38
12
12
38
1.80
45384--45430
22
2.1
22
92
0
76
36
19
12
31
1.89
46060--46167
42
2.6
42
81
0
117
26
26
14
31
1.95
54391--54448
20
2.9
20
77
7
64
29
22
18
29
1.98
54456--54514
12
5.1
12
77
8
59
55
1
0
42
1.09
54457--54513
17
3.4
17
79
11
64
54
1
0
43
1.10
54698--54796
35
2.8
35
93
1
162
24
21
22
32
1.98
58857--58895
15
2.6
15
79
0
51
43
12
5
38
1.65
60337--60473
61
2.2
61
81
0
157
28
16
25
29
1.97
61485--61792
144
2.1
143
85
1
411
33
11
17
36
1.87
61485--61847
144
2.5
142
82
3
332
34
12
16
36
1.86
65097--65138
19
2.2
19
83
8
50
40
21
11
26
1.88
68439--68472
16
2.1
16
94
0
59
14
5
35
44
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
73483--73524
20
2.1
20
86
0
57
35
9
21
33
1.86
75069--75109
22
2.0
21
85
9
57
29
34
4
31
1.79
76004--76063
29
2.1
29
93
0
102
38
6
15
40
1.73
82074--82102
11
2.6
11
100
0
58
31
31
10
27
1.90
82162--82196
2
18.0
2
94
5
63
51
0
0
48
1.00
84696--84730
11
3.1
11
91
4
52
60
0
11
28
1.32

Tables:   1

The End!