genome.fa.s1832.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001832.1 Hibiscus syriacus cultivar Beakdansim tig00003705_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  57205

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
908--945	20	1.9	20	94	0	67	31	34	15	18	1.92
908--1111	65	3.2	64	82	8	218	33	24	17	25	1.96
6924--7000	23	3.5	23	73	8	79	29	27	18	24	1.98
9715--9822	45	2.4	44	83	7	128	31	21	17	29	1.96
9792--9840	19	2.6	19	84	9	57	24	30	18	26	1.98
18082--18157	24	3.2	24	88	0	80	18	13	17	51	1.76
18082--18183	48	2.1	48	81	0	114	20	10	16	51	1.74
18094--18188	24	4.0	24	85	0	118	20	9	17	52	1.72
19594--19619	5	5.2	5	100	0	52	0	19	57	23	1.40
20444--20735	44	6.7	44	75	9	199	25	16	6	51	1.67
31137--31189	20	2.7	20	74	11	63	28	33	15	22	1.94
31178--31224	20	2.3	20	96	0	85	36	23	19	21	1.95
31218--31396	20	9.0	19	72	12	119	40	22	16	20	1.91
31198--31376	40	4.5	39	81	11	206	40	22	16	20	1.91
31218--31396	40	4.5	39	81	9	209	40	22	16	20	1.91
31712--31741	2	15.0	2	100	0	60	50	0	0	50	1.00
31906--31957	20	2.6	19	82	8	68	15	15	21	48	1.81
34096--34180	21	4.1	20	83	11	91	25	31	18	23	1.97
34109--34200	42	2.2	42	84	3	114	25	33	19	21	1.97
35600--35636	14	2.6	14	100	0	74	29	0	21	48	1.50
35762--35813	20	2.6	20	93	0	95	40	25	17	17	1.90
36025--36110	38	2.2	38	89	2	127	17	16	22	44	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36421--36458	19	2.0	19	89	0	58	52	10	5	31	1.58
36842--36879	14	3.1	12	82	17	51	39	15	7	36	1.77
41494--41523	13	2.4	13	94	5	53	43	0	30	26	1.55
47497--47525	14	2.0	15	93	6	51	62	3	20	13	1.46
48127--48151	9	2.8	9	100	0	50	80	0	0	20	0.72
56631--57035	80	5.1	80	83	5	432	31	20	13	35	1.91
56649--57035	159	2.4	157	82	5	460	31	20	12	35	1.91

Tables:   1

The End!