Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001833.1 Hibiscus syriacus cultivar Beakdansim tig00003706_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 94825
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.34
Found at i:2752 original size:27 final size:27
Alignment explanation
Indices: 2714--2812 Score: 157
Period size: 27 Copynumber: 3.7 Consensus size: 27
2704 TTTAAAGTTT
* *
2714 TCGAGTTCGAGTCGAGCTCAGCAATAC
1 TCGAGTTCGACTCGAGCTCAACAATAC
*
2741 TCGAGTTCGAGTCGAGCTCAACAATAC
1 TCGAGTTCGACTCGAGCTCAACAATAC
2768 TCGAGTTCGACTCGAGCTCAAC-ATAC
1 TCGAGTTCGACTCGAGCTCAACAATAC
2794 TCGAGTTCGACTCG-GCTCA
1 TCGAGTTCGACTCGAGCTCA
2813 TTTAACAAAC
Statistics
Matches: 70, Mismatches: 2, Indels: 2
0.95 0.03 0.03
Matches are distributed among these distances:
25 5 0.07
26 18 0.26
27 47 0.67
ACGTcount: A:0.25, C:0.28, G:0.23, T:0.23
Consensus pattern (27 bp):
TCGAGTTCGACTCGAGCTCAACAATAC
Found at i:2928 original size:19 final size:18
Alignment explanation
Indices: 2879--2942 Score: 62
Period size: 19 Copynumber: 3.5 Consensus size: 18
2869 GGTTTTCAAA
2879 CCGGTTCACGG-TCCAGT
1 CCGGTTCACGGTTCCAGT
2896 CCGGTTCAAACGGTTCACAGT
1 CCGGTTC--ACGGTTC-CAGT
*
2917 -CGGTTCAGCGGTTCC-TT
1 CCGGTTCA-CGGTTCCAGT
2934 CCGGTTCAC
1 CCGGTTCAC
2943 TAGTAGCGGT
Statistics
Matches: 40, Mismatches: 1, Indels: 12
0.75 0.02 0.23
Matches are distributed among these distances:
17 9 0.22
18 9 0.22
19 10 0.25
20 8 0.20
21 4 0.10
ACGTcount: A:0.14, C:0.33, G:0.27, T:0.27
Consensus pattern (18 bp):
CCGGTTCACGGTTCCAGT
Found at i:18224 original size:16 final size:16
Alignment explanation
Indices: 18185--18228 Score: 54
Period size: 16 Copynumber: 2.8 Consensus size: 16
18175 AAAATATCCC
*
18185 AAAAAAATAAAAAAGA
1 AAAAAAATACAAAAGA
* *
18201 AAATAAATACAAAATA
1 AAAAAAATACAAAAGA
18217 AAAAAAAT-CAAA
1 AAAAAAATACAAA
18229 TACGTTAACT
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
15 4 0.17
16 20 0.83
ACGTcount: A:0.82, C:0.05, G:0.02, T:0.11
Consensus pattern (16 bp):
AAAAAAATACAAAAGA
Found at i:18283 original size:21 final size:21
Alignment explanation
Indices: 18257--18334 Score: 54
Period size: 21 Copynumber: 3.6 Consensus size: 21
18247 GAAACAAATC
18257 AAATAAAATAAAAGAAATAAA
1 AAATAAAATAAAAGAAATAAA
18278 AAATAATAGA-AACAATGCAAA-AAA
1 AAATAA-A-ATAA-AA-G-AAATAAA
* * *
18302 AAGTATAAACAAAA-AAATATA
1 AAATA-AAATAAAAGAAATAAA
18323 AAATAAAATAAA
1 AAATAAAATAAA
18335 TATAAAATAT
Statistics
Matches: 45, Mismatches: 4, Indels: 17
0.68 0.06 0.26
Matches are distributed among these distances:
20 9 0.20
21 12 0.27
22 3 0.07
23 6 0.13
24 11 0.24
25 4 0.09
ACGTcount: A:0.76, C:0.04, G:0.05, T:0.15
Consensus pattern (21 bp):
AAATAAAATAAAAGAAATAAA
Found at i:18335 original size:16 final size:15
Alignment explanation
Indices: 18297--18343 Score: 60
Period size: 15 Copynumber: 3.1 Consensus size: 15
18287 AAACAATGCA
*
18297 AAAAAAAGTAT-AAAC
1 AAAAAAA-TATAAAAT
18312 AAAAAAATATAAAAT
1 AAAAAAATATAAAAT
18327 AAAATAAATATAAAAT
1 AAAA-AAATATAAAAT
18343 A
1 A
18344 TATATAAATG
Statistics
Matches: 29, Mismatches: 1, Indels: 3
0.88 0.03 0.09
Matches are distributed among these distances:
14 3 0.10
15 14 0.48
16 12 0.41
ACGTcount: A:0.77, C:0.02, G:0.02, T:0.19
Consensus pattern (15 bp):
AAAAAAATATAAAAT
Found at i:18403 original size:12 final size:12
Alignment explanation
Indices: 18383--18415 Score: 50
Period size: 12 Copynumber: 2.8 Consensus size: 12
18373 GAGAAGAAAC
18383 CAAAA-AAAAAA
1 CAAAACAAAAAA
18394 CAAAACAAAAAA
1 CAAAACAAAAAA
*
18406 AAAAACAAAA
1 CAAAACAAAA
18416 TACCTAATAC
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
11 5 0.25
12 15 0.75
ACGTcount: A:0.88, C:0.12, G:0.00, T:0.00
Consensus pattern (12 bp):
CAAAACAAAAAA
Found at i:18404 original size:17 final size:17
Alignment explanation
Indices: 18379--18415 Score: 65
Period size: 17 Copynumber: 2.2 Consensus size: 17
18369 TCAAGAGAAG
*
18379 AAACCAAAAAAAAAACA
1 AAACAAAAAAAAAAACA
18396 AAACAAAAAAAAAAACA
1 AAACAAAAAAAAAAACA
18413 AAA
1 AAA
18416 TACCTAATAC
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 19 1.00
ACGTcount: A:0.86, C:0.14, G:0.00, T:0.00
Consensus pattern (17 bp):
AAACAAAAAAAAAAACA
Found at i:18525 original size:2 final size:2
Alignment explanation
Indices: 18518--18610 Score: 97
Period size: 2 Copynumber: 48.5 Consensus size: 2
18508 ATGTGGGGTA
18518 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AGT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT
* * * * *
18561 TT A- AT AA AT A- AA AT AA AT AA AT A- AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
18600 A- AT AT A- AT AT A
1 AT AT AT AT AT AT A
18611 AACATATAAA
Statistics
Matches: 76, Mismatches: 9, Indels: 12
0.78 0.09 0.12
Matches are distributed among these distances:
1 5 0.07
2 69 0.91
3 2 0.03
ACGTcount: A:0.56, C:0.00, G:0.01, T:0.43
Consensus pattern (2 bp):
AT
Found at i:18581 original size:13 final size:13
Alignment explanation
Indices: 18563--18723 Score: 88
Period size: 13 Copynumber: 12.5 Consensus size: 13
18553 TATAGTATTT
18563 AATAAATAAAATA
1 AATAAATAAAATA
*
18576 AATAAATAATATA
1 AATAAATAAAATA
* * *
18589 TATATAT-ATATA
1 AATAAATAAAATA
18601 ATATAATATAAACAT-
1 A-ATAA-ATAAA-ATA
*
18616 -ATAAA-ACAA-A
1 AATAAATAAAATA
18626 AA-AAATAAGAATA
1 AATAAATAA-AATA
*
18639 AATAAATAGAATA
1 AATAAATAAAATA
18652 AATGAAATAAAAATA
1 AAT-AAAT-AAAATA
* *
18667 TATATATAAAATA
1 AATAAATAAAATA
*
18680 AAAAAATAAAAT-
1 AATAAATAAAATA
* *
18692 -ATACATAAAATGG
1 AATAAATAAAAT-A
18705 AATAAAATAAAA-A
1 AAT-AAATAAAATA
18718 AATAAA
1 AATAAA
18724 AACATGGAAA
Statistics
Matches: 113, Mismatches: 19, Indels: 33
0.68 0.12 0.20
Matches are distributed among these distances:
10 4 0.04
11 13 0.12
12 11 0.10
13 52 0.46
14 16 0.14
15 15 0.13
16 2 0.02
ACGTcount: A:0.70, C:0.02, G:0.03, T:0.25
Consensus pattern (13 bp):
AATAAATAAAATA
Found at i:18620 original size:52 final size:52
Alignment explanation
Indices: 18530--18694 Score: 133
Period size: 54 Copynumber: 3.1 Consensus size: 52
18520 ATATATATAT
* *
18530 ATATATATATATATAT-ATATATATATAGTATTTAATAAATAAAATAAATAAATA
1 ATATATATATATATATAATATA-ATATA-AATAT-ATAAATAAAATAAATAAATA
* * *
18584 ATATATATATATATATAATATAATATAAACATATAAAACAAAAAAAATAAGAATA
1 ATATATATATATATATAATATAATATAAATATAT-AAATAAAATAAAT-A-AATA
* * * * *
18639 A-ATAAATAGA-ATA-AATGA-AATAAAAATATATATATAAAATAAAAAAATA
1 ATATATATATATATATAAT-ATAATATAAATATATAAATAAAATAAATAAATA
*
18688 AAATATA
1 ATATATA
18695 CATAAAATGG
Statistics
Matches: 91, Mismatches: 14, Indels: 16
0.75 0.12 0.13
Matches are distributed among these distances:
49 5 0.05
50 5 0.05
51 9 0.10
52 16 0.18
53 17 0.19
54 29 0.32
55 10 0.11
ACGTcount: A:0.65, C:0.01, G:0.02, T:0.32
Consensus pattern (52 bp):
ATATATATATATATATAATATAATATAAATATATAAATAAAATAAATAAATA
Found at i:18639 original size:28 final size:26
Alignment explanation
Indices: 18603--18698 Score: 66
Period size: 28 Copynumber: 3.5 Consensus size: 26
18593 TATATATAAT
*
18603 ATAATATAAACATATAAAACAAAAAAA
1 ATAAAATAAACATATAAAA-AAAAAAA
* * * **
18630 ATAAGAATAAATAAATAGAATAAATGAA
1 ATAA-AATAAACATATA-AAAAAAAAAA
* * *
18658 ATAAAAATATATATATAAAATAAAAAA
1 AT-AAAATAAACATATAAAAAAAAAAA
*
18685 ATAAAATATACATA
1 ATAAAATAAACATA
18699 AAATGGAATA
Statistics
Matches: 53, Mismatches: 13, Indels: 7
0.73 0.18 0.10
Matches are distributed among these distances:
26 11 0.21
27 12 0.23
28 26 0.49
29 4 0.08
ACGTcount: A:0.71, C:0.03, G:0.03, T:0.23
Consensus pattern (26 bp):
ATAAAATAAACATATAAAAAAAAAAA
Found at i:18678 original size:24 final size:24
Alignment explanation
Indices: 18635--18711 Score: 70
Period size: 24 Copynumber: 3.3 Consensus size: 24
18625 AAAAAATAAG
* *
18635 AATAAATAAATAGA-AT-AAATGA
1 AATAAAAAAATATACATAAAATGA
* *
18657 AATAAAAATATATATATAAAAT-A
1 AATAAAAAAATATACATAAAATGA
* *
18680 AAAAAATAAAATATACATAAAATGG
1 AATAAA-AAAATATACATAAAATGA
18705 AATAAAA
1 AATAAAA
18712 TAAAAAAATA
Statistics
Matches: 43, Mismatches: 8, Indels: 6
0.75 0.14 0.11
Matches are distributed among these distances:
22 11 0.26
23 8 0.19
24 19 0.44
25 5 0.12
ACGTcount: A:0.70, C:0.01, G:0.05, T:0.23
Consensus pattern (24 bp):
AATAAAAAAATATACATAAAATGA
Found at i:19789 original size:2 final size:2
Alignment explanation
Indices: 19782--19809 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
19772 AATGAGAATA
19782 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
19810 TAGAAAAAAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:20939 original size:86 final size:85
Alignment explanation
Indices: 20757--21388 Score: 718
Period size: 85 Copynumber: 7.5 Consensus size: 85
20747 ATCGACACTT
* * ** * * * * *
20757 TTTGTTGAGAGATAGCTTTTCTCGACTTAAGCTATGATGTAAATCTGATATGCCATTGAGCTGAA
1 TTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTGTAAATTTGATATGCCTTTGAGCTGAA
* **
20822 TGGAATCGAACTCGAAGGAA
66 TGTAATCGAACTCGAAGGTC
* ** * *
20842 TTTGTTGACAGATAACCCTTATTACCTTGAGCTATGCTATAAATTTGATATGCCTTTTGAGCTAA
1 TTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTGTAAATTTGATATGCC-TTTGAGCTGA
20907 ATGTAATCGAACTCGAAGGTC
65 ATGTAATCGAACTCGAAGGTC
** * * *
20928 TTTACTAACAGATAACCCTTCTTGCCTTGAGTTATGCTGT-AA----ATATGCCTTTGAGCTGAA
1 TTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTGTAAATTTGATATGCCTTTGAGCTGAA
*
20988 TGTAATCAAACTCGAAGGTC
66 TGTAATCGAACTCGAAGGTC
* * * * * *
21008 TTTTGGTGACAAATAACCCTTATCGCCTTGAGTTATGCTGTAAATTGGATATGCATTTGAGCTGA
1 -TTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTGTAAATTTGATATGCCTTTGAGCTGA
*
21073 ATGTAATCAAACTCGAAGGTC
65 ATGTAATCGAACTCGAAGGTC
* * * * *
21094 TTTTGTTGACAGTTAGCCCTTCTCGCCTTGAGCTATGATGTAAATTTGATGTTCCTTTGAGCTGA
1 -TTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTGTAAATTTGATATGCCTTTGAGCTGA
*
21159 GTGTAATCGAACTCGAAGG-C
65 ATGTAATCGAACTCGAAGGTC
* * * * * *
21179 ATTGGTTGACAAATAGCCCTTCTCTCCTTGAGCTATGCTATAAATTTGATGTGCCTTTGAGCTGA
1 -TTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTGTAAATTTGATATGCCTTTGAGCTGA
*
21244 GTGTAATCGAACTCGAAGGTC
65 ATGTAATCGAACTCGAAGGTC
* * * * * *
21265 TTTGCTGACAGATAACCCATCTCACCTTGAGTTATGCTGTAAATTGGATATGCCTTTGAGCTGAG
1 TTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTGTAAATTTGATATGCCTTTGAGCTGAA
21330 TGTAATCGAACTCGAAGGTC
66 TGTAATCGAACTCGAAGGTC
* * *
21350 TTGGTTGACAGATAACCCTTATCGCCTTGAGTTATGCTG
1 TTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTG
21389 CCAATATTTC
Statistics
Matches: 470, Mismatches: 69, Indels: 16
0.85 0.12 0.03
Matches are distributed among these distances:
80 29 0.06
81 41 0.09
82 2 0.00
85 230 0.49
86 168 0.36
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34
Consensus pattern (85 bp):
TTTGTTGACAGATAACCCTTCTCGCCTTGAGCTATGCTGTAAATTTGATATGCCTTTGAGCTGAA
TGTAATCGAACTCGAAGGTC
Found at i:25324 original size:14 final size:14
Alignment explanation
Indices: 25305--25390 Score: 65
Period size: 14 Copynumber: 6.4 Consensus size: 14
25295 TAATTTAAGG
*
25305 AAACAAATCAAATA
1 AAACAAATAAAATA
25319 AAACAAATAAAATA
1 AAACAAATAAAATA
*
25333 AAATAAAT--AA-A
1 AAACAAATAAAATA
25344 AAAC-AATAGAAATA
1 AAACAAATA-AAATA
**
25358 ATGCAAA-AAAATA
1 AAACAAATAAAATA
* * *
25371 AAAAAAACAAAACA
1 AAACAAATAAAATA
25385 AAACAA
1 AAACAA
25391 GCAGAAACAA
Statistics
Matches: 56, Mismatches: 10, Indels: 12
0.72 0.13 0.15
Matches are distributed among these distances:
10 3 0.05
11 4 0.07
12 2 0.04
13 11 0.20
14 34 0.61
15 2 0.04
ACGTcount: A:0.77, C:0.09, G:0.02, T:0.12
Consensus pattern (14 bp):
AAACAAATAAAATA
Found at i:25376 original size:9 final size:9
Alignment explanation
Indices: 25327--25420 Score: 55
Period size: 9 Copynumber: 10.1 Consensus size: 9
25317 TAAAACAAAT
25327 AAAATAAAA
1 AAAATAAAA
*
25336 TAAATAAAA
1 AAAATAAAA
*
25345 AACAATAGAA
1 AA-AATAAAA
* *
25355 ATAATGCAAA
1 AAAAT-AAAA
25365 AAAATAAAA
1 AAAATAAAA
*
25374 AAAACAAAA
1 AAAATAAAA
* *
25383 CAAAACAAGCA
1 -AAAATAA-AA
* *
25394 GAAACAAAA
1 AAAATAAAA
*
25403 AACAT-AAA
1 AAAATAAAA
25411 AAAATAAAA
1 AAAATAAAA
25420 A
1 A
25421 TATATATATA
Statistics
Matches: 64, Mismatches: 16, Indels: 10
0.71 0.18 0.11
Matches are distributed among these distances:
8 7 0.11
9 30 0.47
10 26 0.41
11 1 0.02
ACGTcount: A:0.78, C:0.09, G:0.04, T:0.10
Consensus pattern (9 bp):
AAAATAAAA
Found at i:25604 original size:2 final size:2
Alignment explanation
Indices: 25597--25720 Score: 159
Period size: 2 Copynumber: 64.5 Consensus size: 2
25587 ATGTGGGGTA
25597 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* *
25639 AT AT AT AT AT AT AT AT AT AT A- AT AT A- AT AT TT A- AT AA AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * *
25678 A- AA AT AA AT AA AC A- AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
25718 AT A
1 AT A
25721 AACATATAAC
Statistics
Matches: 108, Mismatches: 9, Indels: 10
0.85 0.07 0.08
Matches are distributed among these distances:
1 5 0.05
2 103 0.95
ACGTcount: A:0.55, C:0.01, G:0.00, T:0.44
Consensus pattern (2 bp):
AT
Found at i:25763 original size:16 final size:17
Alignment explanation
Indices: 25733--25766 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
25723 CATATAACAT
25733 ATAAAAACAAAAAAATA
1 ATAAAAACAAAAAAATA
*
25750 ATAAAAA-AATAAAATA
1 ATAAAAACAAAAAAATA
25766 A
1 A
25767 AGTAAACTAT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 9 0.56
17 7 0.44
ACGTcount: A:0.82, C:0.03, G:0.00, T:0.15
Consensus pattern (17 bp):
ATAAAAACAAAAAAATA
Found at i:25830 original size:19 final size:19
Alignment explanation
Indices: 25808--25857 Score: 75
Period size: 19 Copynumber: 2.6 Consensus size: 19
25798 AAACAATTAG
25808 GAAAAAATAAATAAATAAA
1 GAAAAAATAAATAAATAAA
*
25827 GAAAATAA-AAAGAAATAAA
1 GAAAA-AATAAATAAATAAA
25846 GAAAAAATAAAT
1 GAAAAAATAAAT
25858 CATAAAAATA
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
18 2 0.07
19 23 0.85
20 2 0.07
ACGTcount: A:0.78, C:0.00, G:0.08, T:0.14
Consensus pattern (19 bp):
GAAAAAATAAATAAATAAA
Found at i:31641 original size:19 final size:19
Alignment explanation
Indices: 31610--31647 Score: 51
Period size: 19 Copynumber: 2.0 Consensus size: 19
31600 AGTGATAAAT
31610 TTCCTAAAAATATT-TTTA
1 TTCCTAAAAATATTGTTTA
*
31628 TTCCATAAATATATTGTTTA
1 TTCC-TAAAAATATTGTTTA
31648 CTCTTGAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
18 4 0.24
19 9 0.53
20 4 0.24
ACGTcount: A:0.37, C:0.11, G:0.03, T:0.50
Consensus pattern (19 bp):
TTCCTAAAAATATTGTTTA
Found at i:33987 original size:47 final size:45
Alignment explanation
Indices: 33890--34015 Score: 148
Period size: 47 Copynumber: 2.8 Consensus size: 45
33880 GTAACCATGC
* * * *
33890 AAATAAGCTTATGAGCTTACGGAAT-AATGGCAAGTATATAGGAA
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGCATATAGGAA
* * *
33934 AAATAAGCTTACGAGCTTATGGAATTTAAATGGTAAGCATTTTGGTA
1 AAATAAGCTTACGAGCTTATGGAA--TAAATGGTAAGCATATAGGAA
33981 AAATAAGCTTACGAGCTTATAGG-ATAAATGGTAAG
1 AAATAAGCTTACGAGCTTAT-GGAATAAATGGTAAG
34016 AGATTTTATA
Statistics
Matches: 71, Mismatches: 7, Indels: 7
0.84 0.08 0.08
Matches are distributed among these distances:
44 22 0.31
45 11 0.15
46 1 0.01
47 35 0.49
48 2 0.03
ACGTcount: A:0.40, C:0.09, G:0.22, T:0.29
Consensus pattern (45 bp):
AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGCATATAGGAA
Found at i:36840 original size:15 final size:15
Alignment explanation
Indices: 36820--36868 Score: 73
Period size: 15 Copynumber: 3.3 Consensus size: 15
36810 ATATATTATA
36820 AGAAGAAGAAAAAAT
1 AGAAGAAGAAAAAAT
*
36835 AGAAGAAGAAAAAAGA
1 AGAAGAAGAAAAAA-T
36851 AGAAGAA-AAAAAAT
1 AGAAGAAGAAAAAAT
36865 AGAA
1 AGAA
36869 AATGAAAATG
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
14 4 0.13
15 20 0.65
16 7 0.23
ACGTcount: A:0.76, C:0.00, G:0.20, T:0.04
Consensus pattern (15 bp):
AGAAGAAGAAAAAAT
Found at i:36851 original size:13 final size:13
Alignment explanation
Indices: 36819--36861 Score: 68
Period size: 13 Copynumber: 3.2 Consensus size: 13
36809 TATATATTAT
36819 AAGAAGAAGAAAAA
1 AAGAAGAAG-AAAA
36833 ATAGAAGAAGAAAA
1 A-AGAAGAAGAAAA
36847 AAGAAGAAGAAAA
1 AAGAAGAAGAAAA
36860 AA
1 AA
36862 AATAGAAAAT
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
13 14 0.50
14 6 0.21
15 8 0.29
ACGTcount: A:0.77, C:0.00, G:0.21, T:0.02
Consensus pattern (13 bp):
AAGAAGAAGAAAA
Found at i:36875 original size:17 final size:16
Alignment explanation
Indices: 36819--36910 Score: 59
Period size: 15 Copynumber: 5.7 Consensus size: 16
36809 TATATATTAT
*
36819 AAGAAGAAGAAAAAA-
1 AAGAAGAAAAAAAAAG
* *
36834 TAGAAGAAGAAAAAAG
1 AAGAAGAAAAAAAAAG
36850 AAGAAGAAAAAAAATAG
1 AAGAAGAAAAAAAA-AG
*
36867 AA-AATGAAAATGAAAACG
1 AAGAA-GAAAA--AAAAAG
36885 -AGAAAGAAAAGAAAAAG
1 AAG-AAGAAAA-AAAAAG
36902 -AGAA-AAAAA
1 AAGAAGAAAAA
36911 TGAGAGATGA
Statistics
Matches: 65, Mismatches: 5, Indels: 15
0.76 0.06 0.18
Matches are distributed among these distances:
14 1 0.02
15 18 0.28
16 16 0.25
17 18 0.28
18 6 0.09
19 6 0.09
ACGTcount: A:0.75, C:0.01, G:0.20, T:0.04
Consensus pattern (16 bp):
AAGAAGAAAAAAAAAG
Found at i:36876 original size:28 final size:30
Alignment explanation
Indices: 36819--36876 Score: 84
Period size: 30 Copynumber: 1.9 Consensus size: 30
36809 TATATATTAT
36819 AAGAAGAAGAAAAAATAGAAGAAGAAAAAAG
1 AAGAAGAAGAAAAAATAGAAGAAG-AAAAAG
36850 AAGAAGAA-AAAAAATAGAA-AATGAAAA
1 AAGAAGAAGAAAAAATAGAAGAA-GAAAA
36877 TGAAAACGAG
Statistics
Matches: 26, Mismatches: 0, Indels: 4
0.87 0.00 0.13
Matches are distributed among these distances:
29 6 0.23
30 12 0.46
31 8 0.31
ACGTcount: A:0.76, C:0.00, G:0.19, T:0.05
Consensus pattern (30 bp):
AAGAAGAAGAAAAAATAGAAGAAGAAAAAG
Found at i:36900 original size:6 final size:6
Alignment explanation
Indices: 36822--36907 Score: 52
Period size: 6 Copynumber: 14.3 Consensus size: 6
36812 ATATTATAAG
* * * *
36822 AAGAAGA AA-AAA TAGAAG AAGAAAA AAGAAG AAGAAA AA-AAA TAGAAA
1 AAGAA-A AAGAAA AAGAAA AAG-AAA AAGAAA AAGAAA AAGAAA AAGAAA
* * * *
36870 ATGAAA ATGAAA ACGAGA AAG-AA AAGAAA AAGAGAA AA
1 AAGAAA AAGAAA AAGAAA AAGAAA AAGAAA AAGA-AA AA
36908 AAATGAGAGA
Statistics
Matches: 61, Mismatches: 13, Indels: 10
0.73 0.15 0.12
Matches are distributed among these distances:
5 10 0.16
6 40 0.66
7 11 0.18
ACGTcount: A:0.74, C:0.01, G:0.20, T:0.05
Consensus pattern (6 bp):
AAGAAA
Found at i:41146 original size:47 final size:45
Alignment explanation
Indices: 41052--41177 Score: 164
Period size: 47 Copynumber: 2.8 Consensus size: 45
41042 GTAACCATGC
* * *
41052 AAATAAGCTTATGAGCTTACGGAAT-AATGGCAAGTATATAGGAA
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATAGGAA
* * *
41096 AAATAAGCTTACGAGCTTATGGAATTTAAATGGTAAGTATTTTGGTA
1 AAATAAGCTTACGAGCTTATGGAA--TAAATGGTAAGTATATAGGAA
*
41143 AAATAAGCTTACGAGCTTATGGGATAAATGGTAAG
1 AAATAAGCTTACGAGCTTATGGAATAAATGGTAAG
41178 AGATTTTATA
Statistics
Matches: 72, Mismatches: 7, Indels: 5
0.86 0.08 0.06
Matches are distributed among these distances:
44 22 0.31
45 11 0.15
46 1 0.01
47 38 0.53
ACGTcount: A:0.40, C:0.08, G:0.23, T:0.29
Consensus pattern (45 bp):
AAATAAGCTTACGAGCTTATGGAATAAATGGTAAGTATATAGGAA
Found at i:42442 original size:24 final size:24
Alignment explanation
Indices: 42415--42460 Score: 83
Period size: 24 Copynumber: 1.9 Consensus size: 24
42405 GATACCCCCC
42415 TTGAAGGGCAACCGATTCCCCCTT
1 TTGAAGGGCAACCGATTCCCCCTT
*
42439 TTGAAGGGGAACCGATTCCCCC
1 TTGAAGGGCAACCGATTCCCCC
42461 ATGTAGGGGA
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.22, C:0.33, G:0.24, T:0.22
Consensus pattern (24 bp):
TTGAAGGGCAACCGATTCCCCCTT
Found at i:42471 original size:22 final size:22
Alignment explanation
Indices: 42410--42482 Score: 83
Period size: 22 Copynumber: 3.2 Consensus size: 22
42400 GAATCGATAC
*
42410 CCCCCTTGAAGGGCAACCGATT
1 CCCCCTTGAAGGGGAACCGATT
42432 CCCCCTTTTGAAGGGGAACCGATT
1 CCCCC--TTGAAGGGGAACCGATT
* * * *
42456 CCCCCATGTAGGGGAATCGATA
1 CCCCCTTGAAGGGGAACCGATT
42478 CCCCC
1 CCCCC
42483 CTGGGGTTCT
Statistics
Matches: 44, Mismatches: 5, Indels: 4
0.83 0.09 0.08
Matches are distributed among these distances:
22 23 0.52
24 21 0.48
ACGTcount: A:0.22, C:0.36, G:0.23, T:0.19
Consensus pattern (22 bp):
CCCCCTTGAAGGGGAACCGATT
Found at i:42811 original size:18 final size:19
Alignment explanation
Indices: 42785--42832 Score: 55
Period size: 18 Copynumber: 2.6 Consensus size: 19
42775 GGCAACTCCA
* *
42785 ACGATGAACCAGAAC-AGC
1 ACGAGGAACAAGAACGAGC
*
42803 ACGAGGAACAAGCACGAGC
1 ACGAGGAACAAGAACGAGC
42822 A-GAGGAACAAG
1 ACGAGGAACAAG
42833 CACAACCAGA
Statistics
Matches: 26, Mismatches: 3, Indels: 2
0.84 0.10 0.06
Matches are distributed among these distances:
18 22 0.85
19 4 0.15
ACGTcount: A:0.46, C:0.23, G:0.29, T:0.02
Consensus pattern (19 bp):
ACGAGGAACAAGAACGAGC
Found at i:42833 original size:18 final size:18
Alignment explanation
Indices: 42800--42845 Score: 65
Period size: 18 Copynumber: 2.5 Consensus size: 18
42790 GAACCAGAAC
*
42800 AGCACGAGGAACAAGCACG
1 AGCA-GAGGAACAAGCACA
42819 AGCAGAGGAACAAGCACA
1 AGCAGAGGAACAAGCACA
*
42837 ACCAGAGGA
1 AGCAGAGGA
42846 TCAAATGCCT
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
18 21 0.84
19 4 0.16
ACGTcount: A:0.46, C:0.24, G:0.30, T:0.00
Consensus pattern (18 bp):
AGCAGAGGAACAAGCACA
Found at i:44850 original size:2 final size:2
Alignment explanation
Indices: 44843--44871 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
44833 AATAAATGAA
44843 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
44872 ATAAAAATGA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:44895 original size:26 final size:26
Alignment explanation
Indices: 44865--44917 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 26
44855 ATATATATAT
44865 ATATATA-ATAAAAATGAAAAAAAATA
1 ATATATACAT-AAAATGAAAAAAAATA
* *
44891 ATATATACATAAAATGGAATAAAATA
1 ATATATACATAAAATGAAAAAAAATA
44917 A
1 A
44918 AAAAATATTA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
26 22 0.92
27 2 0.08
ACGTcount: A:0.68, C:0.02, G:0.06, T:0.25
Consensus pattern (26 bp):
ATATATACATAAAATGAAAAAAAATA
Found at i:46030 original size:2 final size:2
Alignment explanation
Indices: 46023--46070 Score: 96
Period size: 2 Copynumber: 24.0 Consensus size: 2
46013 AATGAGAATA
46023 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
46065 AT AT AT
1 AT AT AT
46071 GGTTAGAAAA
Statistics
Matches: 46, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 46 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:47410 original size:25 final size:24
Alignment explanation
Indices: 47382--47452 Score: 72
Period size: 25 Copynumber: 2.9 Consensus size: 24
47372 TTGTAAAAGG
47382 TTTTTATATTATATATTTTTTAATA
1 TTTTTATATTATAT-TTTTTTAATA
* *
47407 TTTTTCTATTA-ATTTTTTCATATA
1 TTTTTATATTATATTTTTTTA-ATA
* * *
47431 ATTTGATATGATATTTTTTTAA
1 TTTTTATATTATATTTTTTTAA
47453 ACTCATACAT
Statistics
Matches: 37, Mismatches: 7, Indels: 5
0.76 0.14 0.10
Matches are distributed among these distances:
23 6 0.16
24 13 0.35
25 18 0.49
ACGTcount: A:0.30, C:0.03, G:0.03, T:0.65
Consensus pattern (24 bp):
TTTTTATATTATATTTTTTTAATA
Found at i:47553 original size:50 final size:50
Alignment explanation
Indices: 47490--47593 Score: 147
Period size: 50 Copynumber: 2.1 Consensus size: 50
47480 TATAGCAATT
* * *
47490 AACATATATTTACA-TCGGTGTAAGTCTTTACATCTCTCAACCTAAAAATA
1 AACATATACTTACACT-GGTGTAAGTATATACATCTCTCAACCTAAAAATA
* *
47540 AACATATACTTACACTGGTGTAAGTATATATATCTCTCAACTTAAAAATA
1 AACATATACTTACACTGGTGTAAGTATATACATCTCTCAACCTAAAAATA
47590 AACA
1 AACA
47594 CAAATTTACA
Statistics
Matches: 48, Mismatches: 5, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
50 47 0.98
51 1 0.02
ACGTcount: A:0.41, C:0.18, G:0.08, T:0.33
Consensus pattern (50 bp):
AACATATACTTACACTGGTGTAAGTATATACATCTCTCAACCTAAAAATA
Found at i:47603 original size:50 final size:51
Alignment explanation
Indices: 47497--47604 Score: 139
Period size: 50 Copynumber: 2.2 Consensus size: 51
47487 ATTAACATAT
* * * *
47497 ATTTACA-TCGGTGTAAGTCTTTACATCTCTCAACCTAAAAATAAACATAT
1 ATTTACACTCGGTGTAAGTATATACATCTCTCAACCTAAAAATAAACACAA
* * *
47547 ACTTACACT-GGTGTAAGTATATATATCTCTCAACTTAAAAATAAACACAA
1 ATTTACACTCGGTGTAAGTATATACATCTCTCAACCTAAAAATAAACACAA
47597 ATTTACAC
1 ATTTACAC
47605 CGACGTAAAT
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
50 48 0.98
51 1 0.02
ACGTcount: A:0.41, C:0.19, G:0.07, T:0.32
Consensus pattern (51 bp):
ATTTACACTCGGTGTAAGTATATACATCTCTCAACCTAAAAATAAACACAA
Found at i:57393 original size:144 final size:143
Alignment explanation
Indices: 57119--57399 Score: 447
Period size: 143 Copynumber: 2.0 Consensus size: 143
57109 ATAGAGAATG
* *
57119 ATGATTGTAATACTGGAATATCAGATGTCACAAGTATTGACTGAAATTTGAGAATGTTGTGCCAA
1 ATGATTGTAATACTGGAATATCAAATGTCACAAGAATTGACTGAAATTTGAGAATGTTGTGCCAA
*
57184 AGAAAAAAATATTATGTGTTTGTAATTTATGTTTCTAGGATTTAATTATATCTTTTATTATGGTG
66 AGAAAAAAACATTATGTGTTTGTAATTTATGTTTCTAGGATTTAATTATATCTTTTATTATGGTG
57249 TTTTATGATAATT
131 TTTTATGATAATT
* * * * *
57262 ATGATTGTAATACTGGAGTATCAAATGTCACAAGAATTGCCTGAAATTTTATAATGTTGTGTCAA
1 ATGATTGTAATACTGGAATATCAAATGTCACAAGAATTGACTGAAATTTGAGAATGTTGTGCCAA
* *
57327 AGAACAAAAACATTATGTGTTTGTCATTTATGTTTCTA-GACTTTAATTATGTCTTTTATTATGG
66 AGAA-AAAAACATTATGTGTTTGTAATTTATGTTTCTAGGA-TTTAATTATATCTTTTATTATGG
57391 TGTTTTATG
129 TGTTTTATG
57400 CACTTTAAGA
Statistics
Matches: 126, Mismatches: 10, Indels: 3
0.91 0.07 0.02
Matches are distributed among these distances:
143 64 0.51
144 62 0.49
ACGTcount: A:0.32, C:0.08, G:0.17, T:0.43
Consensus pattern (143 bp):
ATGATTGTAATACTGGAATATCAAATGTCACAAGAATTGACTGAAATTTGAGAATGTTGTGCCAA
AGAAAAAAACATTATGTGTTTGTAATTTATGTTTCTAGGATTTAATTATATCTTTTATTATGGTG
TTTTATGATAATT
Found at i:64714 original size:149 final size:149
Alignment explanation
Indices: 64444--64741 Score: 508
Period size: 149 Copynumber: 2.0 Consensus size: 149
64434 CGAAGTGCCC
* *
64444 CGTAGAATTGCACCGTAGTGTCATATAATGATGTCCATAAAGACCACATAGAATTCCTTAAGAAT
1 CGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAAGACCACATAGAATTCCTTAAGAAT
* * *
64509 CATATACATATACTATGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTCCAAAGGATATA
66 CATATACATATACTAAGGATCAAGTATGTGTCTTTCAAGACCTCACACATGTTCCAAAGAATATA
*
64574 CATATGTCTTAAAGAACCG
131 CATATGTCCTAAAGAACCG
* *
64593 CGTAGAATTGCACCGTAGTGCCTTATAATAATGTCCATAAGGACCACATAGAATTCCTTAAGAAT
1 CGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAAGACCACATAGAATTCCTTAAGAAT
64658 CATATACATATACTAAGGATCAAGTATGTGTCTTTCGAA-ACCTCACACATGTTCCAAAGAATAT
66 CATATACATATACTAAGGATCAAGTATGTGTCTTTC-AAGACCTCACACATGTTCCAAAGAATAT
64722 ACATATGTCCTAAAGAACCG
130 ACATATGTCCTAAAGAACCG
64742 AGTATACCCT
Statistics
Matches: 140, Mismatches: 8, Indels: 2
0.93 0.05 0.01
Matches are distributed among these distances:
149 138 0.99
150 2 0.01
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.29
Consensus pattern (149 bp):
CGTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAAGACCACATAGAATTCCTTAAGAAT
CATATACATATACTAAGGATCAAGTATGTGTCTTTCAAGACCTCACACATGTTCCAAAGAATATA
CATATGTCCTAAAGAACCG
Found at i:65340 original size:66 final size:67
Alignment explanation
Indices: 65227--65376 Score: 248
Period size: 67 Copynumber: 2.2 Consensus size: 67
65217 TTTTCTCATG
*
65227 GGGGAATCGGTTCCCCCCCTGGGGGTATCGATTCCCCACTAGCATTCTGG-AATTCATATTCGTT
1 GGGGTATCGGTT-CCCCCCTGGGGGTATCGATTCCCCACTAGCATTCTGGAAATTCATATTCGTT
65291 GAA
65 GAA
* *
65294 GGGGTATCGGTTCCCCCCTGGGGGTATCGATTCCCCTCTAGTATTCTGGAAATTCATATTCGTTG
1 GGGGTATCGGTTCCCCCCTGGGGGTATCGATTCCCCACTAGCATTCTGGAAATTCATATTCGTTG
*
65359 AG
66 AA
65361 GGGGTATCGGTTCCCC
1 GGGGTATCGGTTCCCC
65377 TTGAATGGGT
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
66 35 0.45
67 43 0.55
ACGTcount: A:0.17, C:0.26, G:0.27, T:0.30
Consensus pattern (67 bp):
GGGGTATCGGTTCCCCCCTGGGGGTATCGATTCCCCACTAGCATTCTGGAAATTCATATTCGTTG
AA
Found at i:71441 original size:23 final size:23
Alignment explanation
Indices: 71415--71459 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
71405 CACCACAGCT
71415 CGTATAAA-TGCACCGAAGTGCCC
1 CGTA-AAATTGCACCGAAGTGCCC
*
71438 CGTAAAATTGCACCGTAGTGCC
1 CGTAAAATTGCACCGAAGTGCC
71460 ATATAATGAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 3 0.15
23 17 0.85
ACGTcount: A:0.29, C:0.29, G:0.22, T:0.20
Consensus pattern (23 bp):
CGTAAAATTGCACCGAAGTGCCC
Found at i:71716 original size:149 final size:149
Alignment explanation
Indices: 71438--71741 Score: 520
Period size: 149 Copynumber: 2.0 Consensus size: 149
71428 CGAAGTGCCC
*
71438 CGTAAAATTGCACCGTAGTGCCATATAATGATGTCCATAAGGACCACATAGAATTCCTTAAGAAT
1 CGTAAAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAATTCCTTAAGAAT
* * *
71503 CATATACATATACTATGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTCCAAAGGATATA
66 CATATACATATACTAAGGATCAAGTATGTGTCTTTCAAGACCTCACACATGTTCCAAAGAATATA
*
71568 CATATGTCTTAAAGAACCG
131 CATATGTCCTAAAGAACCG
* *
71587 CGTAGAATTGCACCGTAGTGCCTTATAATAATGTCCATAAGGACCACATAGAATTCCTTAAGAAT
1 CGTAAAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAATTCCTTAAGAAT
71652 CATATACATATACTAAGGATCAAGTATGTGTCTTTCGAA-ACCTCACACATGTTCCAAAGAATAT
66 CATATACATATACTAAGGATCAAGTATGTGTCTTTC-AAGACCTCACACATGTTCCAAAGAATAT
71716 ACATATGTCCTAAAGAACCG
130 ACATATGTCCTAAAGAACCG
*
71736 AGTAAA
1 CGTAAA
71742 CCCTCTACCC
Statistics
Matches: 145, Mismatches: 9, Indels: 2
0.93 0.06 0.01
Matches are distributed among these distances:
149 143 0.99
150 2 0.01
ACGTcount: A:0.37, C:0.20, G:0.15, T:0.28
Consensus pattern (149 bp):
CGTAAAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATAGAATTCCTTAAGAAT
CATATACATATACTAAGGATCAAGTATGTGTCTTTCAAGACCTCACACATGTTCCAAAGAATATA
CATATGTCCTAAAGAACCG
Found at i:72333 original size:66 final size:67
Alignment explanation
Indices: 72220--72369 Score: 248
Period size: 67 Copynumber: 2.2 Consensus size: 67
72210 TTTTCTCATG
*
72220 GGGGAATCGGTTCCCCCCCTGGGGGTATCGATTCCCCACTAGCATTCTGG-AATTCATATTCGTT
1 GGGGTATCGGTT-CCCCCCTGGGGGTATCGATTCCCCACTAGCATTCTGGAAATTCATATTCGTT
72284 GAA
65 GAA
* *
72287 GGGGTATCGGTTCCCCCCTGGGGGTATCGATTCCCCTCTAGTATTCTGGAAATTCATATTCGTTG
1 GGGGTATCGGTTCCCCCCTGGGGGTATCGATTCCCCACTAGCATTCTGGAAATTCATATTCGTTG
*
72352 AG
66 AA
72354 GGGGTATCGGTTCCCC
1 GGGGTATCGGTTCCCC
72370 TTGAATGGGT
Statistics
Matches: 78, Mismatches: 4, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
66 35 0.45
67 43 0.55
ACGTcount: A:0.17, C:0.26, G:0.27, T:0.30
Consensus pattern (67 bp):
GGGGTATCGGTTCCCCCCTGGGGGTATCGATTCCCCACTAGCATTCTGGAAATTCATATTCGTTG
AA
Found at i:77332 original size:2 final size:2
Alignment explanation
Indices: 77213--77323 Score: 133
Period size: 2 Copynumber: 57.0 Consensus size: 2
77203 TTGAAACAAC
77213 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* * *
77254 TA TA TA TA TA TA TA TA TA TA T- TA TG TA TA AA CTA TA TA GTT TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA
*
77297 TA TT TA TA T- TA T- TA TA TA T- TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
77324 AACTATATAG
Statistics
Matches: 94, Mismatches: 8, Indels: 14
0.81 0.07 0.12
Matches are distributed among these distances:
1 5 0.05
2 87 0.93
3 2 0.02
ACGTcount: A:0.46, C:0.01, G:0.02, T:0.51
Consensus pattern (2 bp):
TA
Found at i:77338 original size:20 final size:18
Alignment explanation
Indices: 77220--77395 Score: 118
Period size: 20 Copynumber: 8.9 Consensus size: 18
77210 AACTATAATA
* *
77220 TATATATATATATATATA
1 TATATATAAATATATATT
* *
77238 TATATATATATATATATA
1 TATATATAAATATATATT
*
77256 TATATATATATATATATAT
1 TATATATAAATATATAT-T
*
77275 TATGTATAAACTATATAGTT
1 TATATATAAA-TATATA-TT
* *
77295 TATATTTATATTATTATATAT
1 TATATATA-AATA-TATAT-T
77316 TATATATAAACTATATAGTT
1 TATATATAAA-TATATA-TT
*
77336 TATTAATATAAATTATATAGT
1 TA-T-ATATAAA-TATATATT
77357 TAGTATATAAATTATATATGAAT
1 TA-TATATAAA-TATATAT---T
*
77380 TATATTTAAATATATA
1 TATATATAAATATATA
77396 CAACTTATAT
Statistics
Matches: 132, Mismatches: 13, Indels: 23
0.79 0.08 0.14
Matches are distributed among these distances:
18 35 0.27
19 8 0.06
20 38 0.29
21 28 0.21
22 20 0.15
23 3 0.02
ACGTcount: A:0.46, C:0.01, G:0.03, T:0.49
Consensus pattern (18 bp):
TATATATAAATATATATT
Found at i:77395 original size:21 final size:22
Alignment explanation
Indices: 77364--77417 Score: 58
Period size: 21 Copynumber: 2.5 Consensus size: 22
77354 AGTTAGTATA
*
77364 TAAATTATATATGAA-TTATATT
1 TAAA-TATATATCAACTTATATT
77386 TAAATATATA-CAACTTATATT
1 TAAATATATATCAACTTATATT
* *
77407 TATATTTATAT
1 TAAATATATAT
77418 ATTATGTATA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
20 2 0.07
21 21 0.78
22 4 0.15
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.50
Consensus pattern (22 bp):
TAAATATATATCAACTTATATT
Found at i:77427 original size:17 final size:17
Alignment explanation
Indices: 77407--77459 Score: 52
Period size: 17 Copynumber: 2.9 Consensus size: 17
77397 AACTTATATT
* * *
77407 TATATTTATATATTATG
1 TATAATTATAAATTATA
77424 TATAATTATAAATTATA
1 TATAATTATAAATTATA
77441 TATACTATGTATAAATTAT
1 TATA--AT-TATAAATTAT
77460 TTTGTTTATT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
17 18 0.60
19 2 0.07
20 10 0.33
ACGTcount: A:0.43, C:0.02, G:0.04, T:0.51
Consensus pattern (17 bp):
TATAATTATAAATTATA
Found at i:77470 original size:49 final size:49
Alignment explanation
Indices: 77417--77568 Score: 150
Period size: 49 Copynumber: 3.1 Consensus size: 49
77407 TATATTTATA
* * *
77417 TATTATGTATAATTATAAATTATATATACTATGTATAAATTATTTTGTT
1 TATTATGTATAAATATAAATTATATATACTATGTATAAATTATATAGTT
*
77466 TATTA-ATATAAACTA-AAATTTATATATACTATGTATAAATTATATAGTT
1 TATTATGTATAAA-TATAAA-TTATATATACTATGTATAAATTATATAGTT
* * * *
77515 TA-TATAGTTTAAATATAAAGTATATAAGTA-TATAATATAAAGTATATAGTT
1 TATTAT-GTATAAATATAAATTATAT-A-TACTAT-GTATAAATTATATAGTT
77566 TAT
1 TAT
77569 ATAAAACCTA
Statistics
Matches: 85, Mismatches: 9, Indels: 15
0.78 0.08 0.14
Matches are distributed among these distances:
48 10 0.12
49 44 0.52
50 12 0.14
51 19 0.22
ACGTcount: A:0.45, C:0.02, G:0.07, T:0.47
Consensus pattern (49 bp):
TATTATGTATAAATATAAATTATATATACTATGTATAAATTATATAGTT
Found at i:77531 original size:22 final size:21
Alignment explanation
Indices: 77514--77567 Score: 67
Period size: 22 Copynumber: 2.6 Consensus size: 21
77504 ATTATATAGT
77514 TTATATAGTTTAAATATAAAG
1 TTATATAGTTTAAATATAAAG
*
77535 -TATATAAGTATATAATATAAAG
1 TTATAT-AGTTTA-AATATAAAG
77557 -TATATAGTTTA
1 TTATATAGTTTA
77568 TATAAAACCT
Statistics
Matches: 29, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
20 5 0.17
21 10 0.34
22 14 0.48
ACGTcount: A:0.48, C:0.00, G:0.09, T:0.43
Consensus pattern (21 bp):
TTATATAGTTTAAATATAAAG
Found at i:77783 original size:2 final size:2
Alignment explanation
Indices: 77771--77810 Score: 53
Period size: 2 Copynumber: 19.0 Consensus size: 2
77761 ACAAACTATG
*
77771 TA TA GTA TA TA TA AA CTA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA -TA TA TA TA TA -TA TA TA TA TA TA TA TA TA TA TA TA
77811 ACCTGTAACA
Statistics
Matches: 34, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
2 31 0.91
3 3 0.09
ACGTcount: A:0.50, C:0.03, G:0.03, T:0.45
Consensus pattern (2 bp):
TA
Found at i:77788 original size:20 final size:19
Alignment explanation
Indices: 77753--77802 Score: 64
Period size: 20 Copynumber: 2.6 Consensus size: 19
77743 CTTATAGTAC
* * *
77753 ATATATGTACAAACTATGT
1 ATATATATATAAACTATAT
77772 ATAGTATATATAAACTATAT
1 ATA-TATATATAAACTATAT
77792 ATATATATATA
1 ATATATATATA
77803 TATATATAAC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 11 0.41
20 16 0.59
ACGTcount: A:0.48, C:0.06, G:0.06, T:0.40
Consensus pattern (19 bp):
ATATATATATAAACTATAT
Found at i:78771 original size:149 final size:149
Alignment explanation
Indices: 78513--78815 Score: 597
Period size: 149 Copynumber: 2.0 Consensus size: 149
78503 GAAGTGCCGT
78513 GTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATTATTCCTTAAGAATC
1 GTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATTATTCCTTAAGAATC
78578 ATATACATATACTAGGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTCCAAAGAATATAC
66 ATATACATATACTAGGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTCCAAAGAATATAC
*
78643 ATATGTCCCGAAGGACCGC
131 ATATATCCCGAAGGACCGC
78662 GTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATTATTCCTTAAGAATC
1 GTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATTATTCCTTAAGAATC
78727 ATATACATATACTAGGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTCCAAAGAATATAC
66 ATATACATATACTAGGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTCCAAAGAATATAC
78792 ATATATCCCGAAGGACCGC
131 ATATATCCCGAAGGACCGC
78811 GTAGA
1 GTAGA
78816 CCCTCGACTC
Statistics
Matches: 153, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
149 153 1.00
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.28
Consensus pattern (149 bp):
GTAGAATTGCACCGTAGTGCCATATAATAATGTCCATAAGGACCACATATTATTCCTTAAGAATC
ATATACATATACTAGGGATCAAGTATGTGTCTTTCAAGACTTCACACATGTTCCAAAGAATATAC
ATATATCCCGAAGGACCGC
Found at i:81309 original size:43 final size:47
Alignment explanation
Indices: 81249--81346 Score: 125
Period size: 43 Copynumber: 2.2 Consensus size: 47
81239 CTTATAGTAC
*
81249 ATATATGTATAAACTAT-GTATAT-TATATATA-AAT-TATATATAT
1 ATATATATATAAACTATGGTATATGTATATATACAATCTATATATAT
* *
81292 ATATATATATAACCTATGGTATATGTATATATACAATCTATTTATAT
1 ATATATATATAAACTATGGTATATGTATATATACAATCTATATATAT
*
81339 GT-TATATA
1 ATATATATA
81347 AATTATATAT
Statistics
Matches: 47, Mismatches: 4, Indels: 5
0.84 0.07 0.09
Matches are distributed among these distances:
43 15 0.32
44 6 0.13
45 8 0.17
46 9 0.19
47 9 0.19
ACGTcount: A:0.43, C:0.05, G:0.06, T:0.46
Consensus pattern (47 bp):
ATATATATATAAACTATGGTATATGTATATATACAATCTATATATAT
Found at i:81332 original size:24 final size:22
Alignment explanation
Indices: 81256--81349 Score: 97
Period size: 24 Copynumber: 4.3 Consensus size: 22
81246 TACATATATG
81256 TATAAA-CTATGTATAT-TATA
1 TATAAATCTATGTATATGTATA
* *
81276 TATAAAT-TATATATATATATA
1 TATAAATCTATGTATATGTATA
*
81297 TATATAACCTATGGTATATGTATA
1 TATA-AATCTAT-GTATATGTATA
*
81321 TATACAATCTATTTATATGT-TA
1 TATA-AATCTATGTATATGTATA
81343 TATAAAT
1 TATAAAT
81350 TATATATGTA
Statistics
Matches: 62, Mismatches: 7, Indels: 9
0.79 0.09 0.12
Matches are distributed among these distances:
20 14 0.23
21 11 0.18
22 8 0.13
23 10 0.16
24 19 0.31
ACGTcount: A:0.44, C:0.05, G:0.05, T:0.46
Consensus pattern (22 bp):
TATAAATCTATGTATATGTATA
Found at i:81531 original size:36 final size:36
Alignment explanation
Indices: 81491--81604 Score: 97
Period size: 43 Copynumber: 3.0 Consensus size: 36
81481 TAATTATCTT
81491 AACTATAATTTATATTAATATAATATATAGTTTATA
1 AACTATAATTTATATTAATATAATATATAGTTTATA
* *
81527 AACTATAATGTATTAATATTAATTATATTAACTATAGTGTATA
1 AACTATAA--T-TT-ATATTAA-TATAAT-A-TATAGTTTATA
* * *
81570 AACTATACTATATAATT--TATAACATATAGTTTATA
1 AACTATAATTTAT-ATTAATATAATATATAGTTTATA
81605 TTAATATTAA
Statistics
Matches: 63, Mismatches: 7, Indels: 17
0.72 0.08 0.20
Matches are distributed among these distances:
35 10 0.16
36 9 0.14
37 4 0.06
38 1 0.02
39 4 0.06
40 11 0.17
41 6 0.10
42 1 0.02
43 17 0.27
ACGTcount: A:0.46, C:0.05, G:0.04, T:0.45
Consensus pattern (36 bp):
AACTATAATTTATATTAATATAATATATAGTTTATA
Found at i:81662 original size:29 final size:29
Alignment explanation
Indices: 81600--81655 Score: 80
Period size: 29 Copynumber: 2.0 Consensus size: 29
81590 AACATATAGT
* *
81600 TTATATTAATATTAATTTGATAGATTATT
1 TTATATTAATATTAATTTGATAAATTATA
81629 TTATATTAATATTAA-TT-ATAAATTATA
1 TTATATTAATATTAATTTGATAAATTATA
81656 AATTATAAAC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
27 8 0.32
28 2 0.08
29 15 0.60
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.54
Consensus pattern (29 bp):
TTATATTAATATTAATTTGATAAATTATA
Found at i:81662 original size:72 final size:71
Alignment explanation
Indices: 81580--81721 Score: 171
Period size: 72 Copynumber: 2.0 Consensus size: 71
81570 AACTATACTA
* * * * *
81580 TATAATTTATAACATATAGTTTATATTAATATTAATTTGATA-GATTATT-TTATATTAATATTA
1 TATAAATTATAA-A-ATAGATTATATTAATA-TAAGTTAATATGAATATTATTATATTAATATTA
81643 ATTATAAAT
63 ATTATAAAT
* *
81652 TATAAATTATAAACTAGATTATATTAATATAAGTTAATATTAATATTAATTATATTAATATTAAT
1 TATAAATTATAAAATAGATTATATTAATATAAGTTAATATGAATATT-ATTATATTAATATTAAT
81717 TATAA
65 TATAA
81722 TATATAATTA
Statistics
Matches: 60, Mismatches: 7, Indels: 6
0.82 0.10 0.08
Matches are distributed among these distances:
69 8 0.13
70 19 0.32
71 1 0.02
72 32 0.53
ACGTcount: A:0.46, C:0.01, G:0.04, T:0.49
Consensus pattern (71 bp):
TATAAATTATAAAATAGATTATATTAATATAAGTTAATATGAATATTATTATATTAATATTAATT
ATAAAT
Found at i:81694 original size:6 final size:6
Alignment explanation
Indices: 81672--81744 Score: 50
Period size: 6 Copynumber: 12.3 Consensus size: 6
81662 AAACTAGATT
*
81672 ATATTA ATA-TA A-GTTA ATATTA ATATT- A-ATT- ATATTA ATATTA
1 ATATTA ATATTA ATATTA ATATTA ATATTA ATATTA ATATTA ATATTA
81715 AT-TATA ATATATA ATTATTTTA ATATTA AT
1 ATAT-TA ATAT-TA A-TA--TTA ATATTA AT
81745 TATAAATAGT
Statistics
Matches: 56, Mismatches: 2, Indels: 18
0.74 0.03 0.24
Matches are distributed among these distances:
4 4 0.07
5 11 0.20
6 28 0.50
7 5 0.09
8 4 0.07
9 3 0.05
10 1 0.02
ACGTcount: A:0.48, C:0.00, G:0.01, T:0.51
Consensus pattern (6 bp):
ATATTA
Found at i:81738 original size:28 final size:27
Alignment explanation
Indices: 81635--81769 Score: 104
Period size: 28 Copynumber: 5.0 Consensus size: 27
81625 TATTTTATAT
*
81635 TAATATTAATTATA--AATTATAAATTA
1 TAATATTAATTATATTAA-TATTAATTA
*
81661 TAA-ACTAGATTATATTAATA-TAAGTTAATA
1 TAATATTA-ATTATATTAATATTAA--T--TA
81691 TTAATATTAATTATATTAATATTAATTA
1 -TAATATTAATTATATTAATATTAATTA
*
81719 TAATATATAATTATTTTAATATTAATTA
1 TAATAT-TAATTATATTAATATTAATTA
* *
81747 TAA-A-TAGTT-TATTAATATAAATT
1 TAATATTAATTATATTAATATTAATT
81770 TTATAGGAAT
Statistics
Matches: 91, Mismatches: 7, Indels: 24
0.75 0.06 0.20
Matches are distributed among these distances:
24 12 0.13
25 7 0.08
26 11 0.12
27 9 0.10
28 28 0.31
30 3 0.03
31 15 0.16
32 6 0.07
ACGTcount: A:0.49, C:0.01, G:0.02, T:0.48
Consensus pattern (27 bp):
TAATATTAATTATATTAATATTAATTA
Found at i:82321 original size:3 final size:3
Alignment explanation
Indices: 82289--82352 Score: 62
Period size: 3 Copynumber: 21.3 Consensus size: 3
82279 TCTACAGAAA
* *
82289 TAT TA- TAT TA- TAT TATT TATT TAT TTT TAT TAT TAT T-T CCAT TAT
1 TAT TAT TAT TAT TAT TA-T TA-T TAT TAT TAT TAT TAT TAT -TAT TAT
82334 TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT T
82353 TATTTTTTGT
Statistics
Matches: 52, Mismatches: 4, Indels: 10
0.79 0.06 0.15
Matches are distributed among these distances:
2 5 0.10
3 39 0.75
4 8 0.15
ACGTcount: A:0.30, C:0.03, G:0.00, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:84220 original size:29 final size:29
Alignment explanation
Indices: 84168--84223 Score: 78
Period size: 29 Copynumber: 1.9 Consensus size: 29
84158 AGAGACATAG
*
84168 TTTTCATGTATAATGGAATACTGTATGAA
1 TTTTCATGTATAATGAAATACTGTATGAA
*
84197 TTTTCTTGTAT-ATGAAATAGCTGTATG
1 TTTTCATGTATAATGAAATA-CTGTATG
84224 TGAATTGATA
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 7 0.29
29 17 0.71
ACGTcount: A:0.30, C:0.07, G:0.18, T:0.45
Consensus pattern (29 bp):
TTTTCATGTATAATGAAATACTGTATGAA
Found at i:86453 original size:18 final size:17
Alignment explanation
Indices: 86405--86496 Score: 78
Period size: 18 Copynumber: 5.1 Consensus size: 17
86395 ATAAAATTTA
*
86405 TAATATAAGAATTATAA-
1 TAATATAAAAATTA-AAT
*
86422 AAATATAAAGAATTGAAAT
1 TAATATAAA-AATT-AAAT
86441 TAATATAAAAATTAAATTT
1 TAATATAAAAATTAAA--T
*
86460 ATAATATACAAATTATAAT
1 -TAATATAAAAATTA-AAT
*
86479 TAATATAAAAACTAAAT
1 TAATATAAAAATTAAAT
86496 T
1 T
86497 TCAGAAAGTA
Statistics
Matches: 62, Mismatches: 6, Indels: 14
0.76 0.07 0.17
Matches are distributed among these distances:
17 14 0.23
18 22 0.35
19 11 0.18
20 13 0.21
21 2 0.03
ACGTcount: A:0.60, C:0.02, G:0.03, T:0.35
Consensus pattern (17 bp):
TAATATAAAAATTAAAT
Found at i:86633 original size:16 final size:18
Alignment explanation
Indices: 86599--86633 Score: 56
Period size: 18 Copynumber: 2.1 Consensus size: 18
86589 CAGGACAATA
86599 TCAGATCACTTTAACATG
1 TCAGATCACTTTAACATG
86617 TCAGATCA-TTT-ACATG
1 TCAGATCACTTTAACATG
86633 T
1 T
86634 TGAGTCAATT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 6 0.35
17 3 0.18
18 8 0.47
ACGTcount: A:0.31, C:0.20, G:0.11, T:0.37
Consensus pattern (18 bp):
TCAGATCACTTTAACATG
Found at i:86663 original size:16 final size:16
Alignment explanation
Indices: 86644--86682 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
86634 TGAGTCAATT
*
86644 ACAGGTCAGGTTCATA
1 ACAGGTCAGGTTCAAA
*
86660 ACAGGTCAGGTTGAAA
1 ACAGGTCAGGTTCAAA
86676 ACAGGTC
1 ACAGGTC
86683 GAGTAATACC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.33, C:0.18, G:0.28, T:0.21
Consensus pattern (16 bp):
ACAGGTCAGGTTCAAA
Found at i:86818 original size:22 final size:22
Alignment explanation
Indices: 86776--86818 Score: 52
Period size: 22 Copynumber: 2.0 Consensus size: 22
86766 TCGGTTCAAT
* *
86776 TCGGGTTCAGGTCGTTCTCAGG
1 TCGGGTGCAGGTCGGTCTCAGG
86798 TCGGGTGCAGGTCAGGT-TCAG
1 TCGGGTGCAGGTC-GGTCTCAG
86819 ATCCACAATT
Statistics
Matches: 18, Mismatches: 2, Indels: 2
0.82 0.09 0.09
Matches are distributed among these distances:
22 16 0.89
23 2 0.11
ACGTcount: A:0.12, C:0.21, G:0.40, T:0.28
Consensus pattern (22 bp):
TCGGGTGCAGGTCGGTCTCAGG
Found at i:87933 original size:16 final size:15
Alignment explanation
Indices: 87912--87946 Score: 52
Period size: 16 Copynumber: 2.3 Consensus size: 15
87902 TAAATAAGTT
87912 AAAAATGTTACATATA
1 AAAAATGTTA-ATATA
*
87928 AAAAATGTTATTATA
1 AAAAATGTTAATATA
87943 AAAA
1 AAAA
87947 GTATACAAAC
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 8 0.44
16 10 0.56
ACGTcount: A:0.60, C:0.03, G:0.06, T:0.31
Consensus pattern (15 bp):
AAAAATGTTAATATA
Found at i:93134 original size:40 final size:40
Alignment explanation
Indices: 93075--93162 Score: 151
Period size: 40 Copynumber: 2.2 Consensus size: 40
93065 AGTGATTCTA
*
93075 TATT-AGCCATTGAAAAGATAGAGAATTTGTAAAGGTTGC
1 TATTGAGCCATTGAAAAGATAGAGAATTTGTAAAGGTTAC
*
93114 TATTGAGCCATTGAAAAGATAGGGAATTTGTAAAGGTTAC
1 TATTGAGCCATTGAAAAGATAGAGAATTTGTAAAGGTTAC
93154 TATTGAGCC
1 TATTGAGCC
93163 TAGAAAAAGA
Statistics
Matches: 46, Mismatches: 2, Indels: 1
0.94 0.04 0.02
Matches are distributed among these distances:
39 4 0.09
40 42 0.91
ACGTcount: A:0.36, C:0.09, G:0.24, T:0.31
Consensus pattern (40 bp):
TATTGAGCCATTGAAAAGATAGAGAATTTGTAAAGGTTAC
Found at i:93630 original size:2 final size:2
Alignment explanation
Indices: 93625--93657 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
93615 ACACACACTT
93625 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
93658 TCGTAAACTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Done.