genome.fa.s1834.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001834.1 Hibiscus syriacus cultivar Beakdansim tig00003708_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105026

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6832--6942	35	3.2	35	83	2	134	26	36	4	33	1.77
15463--15489	2	13.5	2	100	0	54	51	0	0	48	1.00
17862--17981	60	2.0	60	86	3	170	32	23	4	40	1.74
18167--18345	60	3.0	59	82	2	198	42	3	18	35	1.67
23099--23145	20	2.3	20	96	0	85	36	25	19	19	1.95
23152--23206	20	2.8	20	86	8	76	29	25	10	34	1.90
23383--23421	16	2.6	15	84	11	53	28	5	0	66	1.12
23743--23782	19	2.1	19	100	0	80	42	10	15	32	1.79
24184--24235	24	2.2	24	85	0	68	21	19	17	42	1.89
26155--26199	21	2.1	21	87	0	63	31	28	24	15	1.96
26785--26819	18	1.9	18	88	11	54	54	5	17	22	1.64
27064--27089	2	13.0	2	100	0	52	50	0	0	50	1.00
27523--27597	31	2.4	32	85	10	95	40	9	24	26	1.85
27709--28161	149	3.0	149	100	0	906	27	16	20	35	1.94
31103--31147	21	2.1	21	87	0	63	31	28	24	15	1.96
31711--31745	18	1.9	18	88	11	54	54	5	17	22	1.64
32453--32527	31	2.5	31	82	10	84	40	9	22	28	1.85
32467--32527	30	2.0	31	84	9	81	42	9	21	26	1.84
32639--33086	149	3.0	147	96	3	821	27	16	20	35	1.94
34756--34791	18	2.0	18	94	0	63	55	22	2	19	1.56
35186--35235	25	2.0	25	96	0	91	26	8	22	44	1.80
35612--35664	24	2.2	24	89	0	79	37	1	13	47	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36605--36639	6	5.8	6	86	0	52	60	20	2	17	1.49
36606--36646	18	2.3	18	95	0	73	56	24	2	17	1.53
36631--37136	150	3.4	150	95	0	906	30	16	15	38	1.89
45437--45485	20	2.5	20	86	0	71	24	24	34	16	1.95
46221--46259	20	2.0	20	94	0	69	38	20	17	23	1.93
47894--48012	21	5.7	21	81	3	132	21	20	36	21	1.96
47894--48014	42	2.9	42	86	0	170	22	20	35	21	1.96
48156--48201	4	11.5	4	85	0	65	69	2	2	26	1.11
50171--50209	20	1.9	21	89	5	62	15	10	20	53	1.70
50550--50600	22	2.3	22	100	0	102	19	13	45	21	1.85
50756--50821	20	3.3	20	95	0	114	19	12	25	42	1.86
50756--50846	40	2.3	40	83	7	114	19	13	24	42	1.87
54000--54052	21	2.5	21	81	6	72	20	26	18	33	1.96
54062--54188	20	6.3	20	83	5	148	30	26	17	25	1.97
54059--54176	41	2.9	41	86	3	150	33	26	16	23	1.96
54665--54723	20	3.0	20	87	0	73	15	18	22	44	1.87
54860--54914	25	2.2	24	78	15	58	20	9	18	52	1.71
56041--56088	18	2.7	18	90	0	78	25	45	12	16	1.82
56623--56668	20	2.3	20	85	7	58	39	26	19	15	1.91
56662--56711	19	2.6	19	87	0	73	46	16	22	16	1.84
56707--56797	19	5.3	18	71	24	81	12	17	23	47	1.81
56725--56781	14	3.7	14	75	20	60	10	15	22	50	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56718--56797	33	2.4	33	100	0	160	12	18	21	47	1.81
56770--56856	20	4.4	20	81	7	88	16	22	22	37	1.93
56718--56856	33	3.8	37	85	10	125	14	20	22	42	1.88
56770--56845	40	1.9	39	86	2	107	17	22	21	39	1.92
56850--56902	20	2.7	20	93	0	97	28	7	30	33	1.85
57191--57247	29	2.0	29	92	0	96	19	31	14	35	1.91
57290--57384	21	4.5	21	73	6	77	23	35	18	22	1.96
57280--57370	41	2.2	42	88	2	139	21	39	15	23	1.91
58956--59001	19	2.4	19	100	0	92	47	17	19	15	1.82
59039--59134	20	4.8	20	97	0	174	14	22	23	38	1.92
59685--59793	20	5.4	20	82	6	112	22	18	27	31	1.97
59660--59798	41	3.4	41	77	4	147	22	18	25	33	1.97
60704--60728	10	2.5	10	100	0	50	16	0	0	84	0.63
62084--62109	2	13.0	2	100	0	52	50	0	0	50	1.00
62310--62348	2	19.5	2	100	0	78	48	0	0	51	1.00
66806--66958	58	2.6	58	80	8	166	28	22	7	41	1.81
67684--67713	15	2.0	15	100	0	60	40	0	6	53	1.27
75276--75367	3	31.7	3	68	14	50	42	0	2	55	1.12
75272--75365	21	4.4	20	78	9	98	42	0	2	55	1.12
75782--75824	19	2.3	19	95	0	77	20	32	25	20	1.97
76794--76824	14	2.2	14	94	0	53	54	25	19	0	1.44
77725--77777	20	2.6	20	93	3	88	28	33	18	18	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84571--84720	77	2.0	76	93	5	259	34	8	2	56	1.40
85349--85397	23	2.1	23	88	0	71	40	8	18	32	1.80
85313--85474	87	1.9	87	96	0	297	42	9	13	33	1.77
85469--86194	200	3.6	198	87	2	983	30	15	14	38	1.88
88917--88964	19	2.5	19	96	0	87	52	10	6	31	1.60
90414--91163	199	3.8	201	83	3	925	32	14	14	38	1.86
92685--92740	24	2.3	24	84	6	78	50	12	5	32	1.63
92685--92721	18	2.1	18	89	0	56	51	10	5	32	1.60
97633--97686	23	2.3	23	83	0	63	27	18	33	20	1.96
101520--101741	117	1.9	117	82	5	279	27	14	9	48	1.75
104240--105026	196	4.0	197	90	3	1187	34	14	13	37	1.85

Tables:   1

The End!