Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001835.1 Hibiscus syriacus cultivar Beakdansim tig00003714_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 189360
ACGTcount: A:0.33, C:0.18, G:0.16, T:0.33
Found at i:401 original size:73 final size:73
Alignment explanation
Indices: 324--466 Score: 218
Period size: 76 Copynumber: 1.9 Consensus size: 73
314 TCATTTTGTC
324 TCCATAATATTTAAATCAATAA-T-TATTTTATTTTTTAAATTATATTAATTTTATCTTCGAATT
1 TCCATAATATTTAAATC-ATAATTCTATTTTATTTTTT-AATTATATTAATTTTATCTTCGAATT
387 TATATCATCA
64 TATATCATCA
*
397 TCCATAATATTTAAATCATAATTTTGCTTTTTTATTTTTTAATTATATTAATTTTATCTTCGAAT
1 TCCATAATATTTAAATCATAA--TT-CTATTTTATTTTTTAATTATATTAATTTTATCTTCGAAT
462 TTATA
63 TTATA
467 ATCGTGTCAA
Statistics
Matches: 64, Mismatches: 1, Indels: 7
0.89 0.01 0.10
Matches are distributed among these distances:
72 4 0.06
73 17 0.27
75 1 0.02
76 30 0.47
77 12 0.19
ACGTcount: A:0.34, C:0.09, G:0.02, T:0.55
Consensus pattern (73 bp):
TCCATAATATTTAAATCATAATTCTATTTTATTTTTTAATTATATTAATTTTATCTTCGAATTTA
TATCATCA
Found at i:1188 original size:85 final size:85
Alignment explanation
Indices: 1045--1203 Score: 291
Period size: 85 Copynumber: 1.9 Consensus size: 85
1035 TATTTATATC
*
1045 ATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGTA
1 ATTTAACCGAAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGTA
1110 ACGCTTATAATAAAATAGAT
66 ACGCTTATAATAAAATAGAT
*
1130 ATTTAACCGAAAATATTATCAAGTACAATAACATATTAGGTAGCGTTTATATAATGTAATAGGTA
1 ATTTAACCGAAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGTA
*
1195 ACGTTTATA
66 ACGCTTATA
1204 TTGACCTATT
Statistics
Matches: 71, Mismatches: 3, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
85 71 1.00
ACGTcount: A:0.43, C:0.10, G:0.14, T:0.33
Consensus pattern (85 bp):
ATTTAACCGAAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGTA
ACGCTTATAATAAAATAGAT
Found at i:1668 original size:198 final size:196
Alignment explanation
Indices: 1205--1903 Score: 835
Period size: 197 Copynumber: 3.6 Consensus size: 196
1195 ACGTTTATAT
* * *
1205 TGACCTATTTTCTAACTAAACCGGTATATT-TACCGGTAACATTGCAAATTTACCTA-TACA-T-
1 TGACCTATTTTCTAA-TAAACCGATATATTATACCGGTTACATTGTAAATTTACCTATTACATTA
*
1266 T-ATTATCGGTTTCGATGTTTTTGGGATCGATACAATTT--TAAATGTATCGACACTTTATGCGT
65 TAATTATCGGTTTCGATGTTTTTGGGATCGATAC-TTTTAATAAATGTATCGACACTTTATGCGT
* * * * *
1328 GCACCTC-ATTGGCATTCATTCTGGAAAAAAAGTATCG--ACAAACTTAAAAAGTATTGATACAT
129 GCACCTCGTTTGGCATTCATTCTGG-ACAAAAGTATCGACACAAATTTAAAAAGTGTCGATACAT
1390 TATG
193 TATG
* * *
1394 TAGACCTA-TTTCTCATAAAACC-AGTATA--CTACCGG-TACATTGTAAATTTACCTATTACGT
1 T-GACCTATTTTCTAAT-AAACCGA-TATATTATACCGGTTACATTGTAAATTTACCTATTACAT
* *
1454 TGTAATTATTGGTTTCGATGTTTTTGGGATCGATACTTTTAATAAATGTATCGACACTTTATGCG
63 TATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTTTAATAAATGTATCGACACTTTATGCG
* * *
1519 TACACCTCGTTTAGCATTCATTCTGGACAAATGTATCGACACAAATTTAAAAAGTGTCGATACAT
128 TGCACCTCGTTTGGCATTCATTCTGGACAAAAGTATCGACACAAATTTAAAAAGTGTCGATACAT
1584 TATG
193 TATG
* * *
1588 TGACCTATTCTCTCATAAAACCGATATATTTATACCGATTACATTGTAAATTTACCTATTACATT
1 TGACCTATTTTCTAAT-AAACCGATATA-TTATACCGGTTACATTGTAAATTTACCTATTACATT
* *
1653 ATAATTATCGGTTTCGATGTTATTGGGATTGATACTTTTAAT-AATGTATCGACACTTTATGC-T
64 ATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTTTAATAAATGTATCGACACTTTATGCGT
* * ** *
1716 GCACCTCGTTTGGGTATTCATTCTAGACAATAAGTATCGACACAAATTCCACAAGTGTCGATACA
129 GCACCTCGTTT-GGCATTCATTCTGGACAA-AAGTATCGACACAAATTTAAAAAGTGTCGATACA
1781 TTATG
192 TTATG
* * * * *
1786 TTGACATGTTTTCTAATTAACCG-TATATTAATACAGGTTACATTGTTAATTTACCTATTACATT
1 -TGACCTATTTTCTAATAAACCGATATATT-ATACCGGTTACATTGTAAATTTACCTATTACATT
* *
1850 ATAATTATTGGTTTCGATG-TTTTGGGGTCGATACTTTTAGA-AAATGTATCGACA
64 ATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTTTA-ATAAATGTATCGACA
1904 TATGTTTATC
Statistics
Matches: 442, Mismatches: 43, Indels: 42
0.84 0.08 0.08
Matches are distributed among these distances:
187 17 0.04
188 10 0.02
189 17 0.04
190 10 0.02
191 31 0.07
192 40 0.09
193 21 0.05
194 44 0.10
195 1 0.00
196 30 0.07
197 106 0.24
198 103 0.23
199 12 0.03
ACGTcount: A:0.31, C:0.16, G:0.15, T:0.38
Consensus pattern (196 bp):
TGACCTATTTTCTAATAAACCGATATATTATACCGGTTACATTGTAAATTTACCTATTACATTAT
AATTATCGGTTTCGATGTTTTTGGGATCGATACTTTTAATAAATGTATCGACACTTTATGCGTGC
ACCTCGTTTGGCATTCATTCTGGACAAAAGTATCGACACAAATTTAAAAAGTGTCGATACATTAT
G
Found at i:4616 original size:19 final size:19
Alignment explanation
Indices: 4592--4639 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
4582 ATATATTCAC
4592 ATACAAAATTATAAATCGT
1 ATACAAAATTATAAATCGT
*
4611 ATACAAAATTATGAATCGT
1 ATACAAAATTATAAATCGT
4630 ATACAAAATT
1 ATACAAAATT
4640 TGTAAGGCAA
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.52, C:0.10, G:0.06, T:0.31
Consensus pattern (19 bp):
ATACAAAATTATAAATCGT
Found at i:6648 original size:389 final size:389
Alignment explanation
Indices: 6074--6781 Score: 1034
Period size: 389 Copynumber: 1.8 Consensus size: 389
6064 TTAAAACAAA
* * * * * * *
6074 TATCGATACAAATTTAAAAGTGTCGCTACATTATATTAACCTATTTTCTAATTAAACTGGTATAT
1 TATCGATACAAATTTAAAAATATCGATACATCATATTAACCTATTTTCTAATTAAACCGATACAT
* *
6139 TTATACCGGTTATATTACAAAATTACCTATTACATAATTATGAGTTTCGATGTTTTTGGGATCAA
66 TTATACCGGTTATATTACAAAATTACATATTACATAATTATCAGTTTCGATGTTTTTGGGATCAA
6204 AAATTTAATAAATGTATCGACACTTTATCCGTGCACTCGTTTGGGCATTCATTCTGGACAAAAAG
131 AAATTT-ATAAATGTATCGACACTTTATCCGTGCACTCGTTTGGGCATTCATTCTGGACAAAAAG
6269 TATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTCGCTCATAAAACC-GTATA
195 TATCGACACAAATTTAAAAAGTGTCGATACA-TATGTAGACCTATTCGCTCATAAAACCGGTATA
* * * *
6333 TTTATACCGCTTACATTGTAAAATTACCTATTACATTGTAATTATGGGTTTCGATGTTTTGGAAT
259 TATATACCGCTTACATTATAAAATTACCTATTACATTATAATTATCGGTTTCGATGTTTTGGAAT
6398 CGATACAATTAAATGTATCGACACTTTATGTGTGCACCTCGTTTGGCTTTCATTCTGGATAAAAA
324 CGATACAATTAAATGTATCGACACTTTATGTGTGCACCTCGTTTGGCTTTCATTCTGGATAAAAA
6463 G
389 G
* * *
6464 TATCGATA-TAATTTAAAAATATCGATACATCATGTTGACCTATTTTCTAATT-AACCGATACAT
1 TATCGATACAAATTTAAAAATATCGATACATCATATTAACCTATTTTCTAATTAAACCGATACAT
** *
6527 TTATACCGGTTATATTGTAAAGTTACATATTACATTATAATTATCAGTTTCGATGTTTTT-GGAT
66 TTATACCGGTTATATTACAAAATTACATATTAC---ATAATTATCAGTTTCGATGTTTTTGGGAT
* *
6591 CAATACAATTT-TAAATGTATCGACACTTTATGC-TGGATCTCG-TTGGGCATTCATTCTGGACA
128 CAA-A-AATTTATAAATGTATCGACACTTTATCCGTGCA-CTCGTTTGGGCATTCATTCTGGACA
* * **
6653 AAAAGTATCGACACAAATTTAGAGAGTGTCGATACATATGTAGACCTATTTTCTCATAAAACCGG
190 AAAAGTATCGACACAAATTTAAAAAGTGTCGATACATATGTAGACCTATTCGCTCATAAAACCGG
* * * *
6718 TATATATCTATCGGTTACATTATAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTT
255 TATATATATACCGCTTACATTATAAAATTACCTATTACATTATAATTATCGGTTTCGATGTTTT
6782 TGGGATTGAT
Statistics
Matches: 282, Mismatches: 29, Indels: 15
0.87 0.09 0.05
Matches are distributed among these distances:
388 62 0.22
389 151 0.54
390 40 0.14
391 24 0.09
392 5 0.02
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (389 bp):
TATCGATACAAATTTAAAAATATCGATACATCATATTAACCTATTTTCTAATTAAACCGATACAT
TTATACCGGTTATATTACAAAATTACATATTACATAATTATCAGTTTCGATGTTTTTGGGATCAA
AAATTTATAAATGTATCGACACTTTATCCGTGCACTCGTTTGGGCATTCATTCTGGACAAAAAGT
ATCGACACAAATTTAAAAAGTGTCGATACATATGTAGACCTATTCGCTCATAAAACCGGTATATA
TATACCGCTTACATTATAAAATTACCTATTACATTATAATTATCGGTTTCGATGTTTTGGAATCG
ATACAATTAAATGTATCGACACTTTATGTGTGCACCTCGTTTGGCTTTCATTCTGGATAAAAAG
Found at i:6775 original size:196 final size:195
Alignment explanation
Indices: 6074--6784 Score: 831
Period size: 195 Copynumber: 3.7 Consensus size: 195
6064 TTAAAACAAA
* * * * *
6074 TATCGATACAAATTTAAAAGTGTCGCTACATTATATTA-ACCTATTTTCTAATTAAACTGGTATA
1 TATCGACACAAATTTAAAAGTGTCGATACATTAT-GTAGACCTATTTTCTAATAAAACCGGTATA
* *
6138 TTTATACCGGTTATATTACAAAATTACCTATTAC---ATAATTAT-GAGTTTCGATGTTTTTGGG
65 TTTATACCGGTTACATTATAAAATTACCTATTACATTATAATTATCG-GTTTCGATGTTTTT-GG
* *
6199 ATCAA-A-AATTTAATAAATGTATCGACACTTTATCCGTGCACTCGTTTGGGCATTCATTCTGGA
128 ATCAATACAATTT--TAAATGTATCGACACTTTATGC-TGGACTCG-TTGGGCATTCATTCTGGA
6262 CAAAAAG
189 CAAAAAG
** *
6269 TATCGACACAAATTTAAAAAGTGTCGATACATTATGTAGACCTATTCGCTCATAAAACC-GTATA
1 TATCGACACAAATTT-AAAAGTGTCGATACATTATGTAGACCTATTTTCTAATAAAACCGGTATA
* * * *
6333 TTTATACCGCTTACATTGTAAAATTACCTATTACATTGTAATTATGGGTTTCGATG-TTTTGGAA
65 TTTATACCGGTTACATTATAAAATTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGG-A
* * * *
6397 TCGATACAA--TTAAATGTATCGACACTTTATG-TGTGCACCTCGTTTGGCTTTCATTCTGGATA
129 TCAATACAATTTTAAATGTATCGACACTTTATGCTG-G-A-CTCGTTGGGCATTCATTCTGGACA
6459 AAAAG
191 AAAAG
* * * * * * * * *
6464 TATCGATA-TAATTTAAAAATATCGATACATCATGTTGACCTATTTTCTAAT-TAACCGATACAT
1 TATCGACACAAATTTAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATAAAACCGGTATAT
* * * * *
6527 TTATACCGGTTATATTGTAAAGTTACATATTACATTATAATTATCAGTTTCGATGTTTTTGGATC
66 TTATACCGGTTACATTATAAAATTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGATC
6592 AATACAATTTTAAATGTATCGACACTTTATGCTGGATCTCGTTGGGCATTCATTCTGGACAAAAA
131 AATACAATTTTAAATGTATCGACACTTTATGCTGGA-CTCGTTGGGCATTCATTCTGGACAAAAA
6657 G
195 G
* *
6658 TATCGACACAAATTTAGAGAGTGTCGATACA-TATGTAGACCTATTTTCTCATAAAACCGGTATA
1 TATCGACACAAATTTA-AAAGTGTCGATACATTATGTAGACCTATTTTCTAATAAAACCGGTATA
* * * *
6722 TATCTATCGGTTACATTATAAATTTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGG
65 TTTATACCGGTTACATTATAAAATTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGG
6785 GATTGATACT
Statistics
Matches: 434, Mismatches: 62, Indels: 39
0.81 0.12 0.07
Matches are distributed among these distances:
192 4 0.01
193 93 0.21
194 45 0.10
195 148 0.34
196 115 0.26
197 9 0.02
198 17 0.04
199 3 0.01
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (195 bp):
TATCGACACAAATTTAAAAGTGTCGATACATTATGTAGACCTATTTTCTAATAAAACCGGTATAT
TTATACCGGTTACATTATAAAATTACCTATTACATTATAATTATCGGTTTCGATGTTTTTGGATC
AATACAATTTTAAATGTATCGACACTTTATGCTGGACTCGTTGGGCATTCATTCTGGACAAAAAG
Found at i:8374 original size:24 final size:24
Alignment explanation
Indices: 8320--8374 Score: 69
Period size: 24 Copynumber: 2.3 Consensus size: 24
8310 CGAAATTTAT
8320 ATTG-AATTCAAACTCAAATTGAA
1 ATTGAAATTCAAACTCAAATTGAA
* *
8343 ATTTAAATTCAAACTCCAATT-AA
1 ATTGAAATTCAAACTCAAATTGAA
8366 ATATGAAAT
1 AT-TGAAAT
8375 GAACATAAAA
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
23 7 0.26
24 20 0.74
ACGTcount: A:0.49, C:0.13, G:0.05, T:0.33
Consensus pattern (24 bp):
ATTGAAATTCAAACTCAAATTGAA
Found at i:13289 original size:23 final size:23
Alignment explanation
Indices: 13225--13278 Score: 63
Period size: 23 Copynumber: 2.3 Consensus size: 23
13215 CGATTCCCAA
* * * *
13225 AAAGAGGGAATCGGTTTCCATTC
1 AAAGGGGGAATCAGTTCCCCTTC
13248 AAAGGGGGAATCAGTTCCCCTTC
1 AAAGGGGGAATCAGTTCCCCTTC
*
13271 AAGGGGGG
1 AAAGGGGG
13279 TATCGATTCC
Statistics
Matches: 26, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.28, C:0.19, G:0.33, T:0.20
Consensus pattern (23 bp):
AAAGGGGGAATCAGTTCCCCTTC
Found at i:17349 original size:117 final size:117
Alignment explanation
Indices: 17129--17350 Score: 288
Period size: 117 Copynumber: 1.9 Consensus size: 117
17119 CTTTCAAATC
* *
17129 GAAATTTTCTTTTTCAATACTTTCAAATTTCATTTTTGAAAGCTCTAAATCCTTCTTCAAGATTT
1 GAAAATTTCTTTTTCAATACTTTCAAATTTCATTTTTGAAAGCTCTAAATCCTTCTTCAACATTT
* *
17194 CATTTTGATTTTCAAAATCCATTTTCGTTTCTAGAAGAAGTTTGTTTAATTT
66 CATTTTGATTTTCAAAATCCATTTTAGTTTCTAAAAGAAGTTTGTTTAATTT
* * * *
17246 GAAAATTTCTTTTTCAA-AGTTTTCAAATTTTATTTTTGAAAGCTCTAACT-CTTTTCTCAACAT
1 GAAAATTTCTTTTTCAATA-CTTTCAAATTTCATTTTTGAAAGCTCTAAATCCTTCT-TCAACAT
* * **
17309 TTCATTTTGATTTTCCAAGTCTGTTTTAGTTT-TCAAAAGAAG
64 TTCATTTTGATTTTCAAAATCCATTTTAGTTTCT-AAAAGAAG
17351 ATCATTTTTA
Statistics
Matches: 90, Mismatches: 12, Indels: 6
0.83 0.11 0.06
Matches are distributed among these distances:
116 6 0.07
117 84 0.93
ACGTcount: A:0.28, C:0.14, G:0.09, T:0.48
Consensus pattern (117 bp):
GAAAATTTCTTTTTCAATACTTTCAAATTTCATTTTTGAAAGCTCTAAATCCTTCTTCAACATTT
CATTTTGATTTTCAAAATCCATTTTAGTTTCTAAAAGAAGTTTGTTTAATTT
Found at i:19609 original size:15 final size:15
Alignment explanation
Indices: 19568--19617 Score: 64
Period size: 15 Copynumber: 3.1 Consensus size: 15
19558 AAAGAATCGA
*
19568 TTGGTTGAGAAGGAGG
1 TTGGTTGAGAA-GAGC
19584 TTGTCGTTGAGAAGAGC
1 TTG--GTTGAGAAGAGC
19601 TTGGTTGAGAAGAGC
1 TTGGTTGAGAAGAGC
19616 TT
1 TT
19618 TGAGAAAGAC
Statistics
Matches: 31, Mismatches: 1, Indels: 5
0.84 0.03 0.14
Matches are distributed among these distances:
15 14 0.45
16 3 0.10
17 6 0.19
18 8 0.26
ACGTcount: A:0.24, C:0.06, G:0.40, T:0.30
Consensus pattern (15 bp):
TTGGTTGAGAAGAGC
Found at i:20264 original size:199 final size:199
Alignment explanation
Indices: 19924--22004 Score: 3219
Period size: 199 Copynumber: 10.4 Consensus size: 199
19914 AGTAATTTAA
* * * * * * *
19924 AAAAAGTATCGACACAAATTTTAAAAGTGTCAATACATAATGTAGACATATTCTCTCATAAAATT
1 AAAATGTATCGACACAAACTTAAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAATC
* *
19989 AGTATATTTATACCAGTTACATTGTAAATTTACCTATTACATTATAATTATGGGTTTCGATGTTT
66 GGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATGGGTTTCGATGTTT
* **
20054 TTGGGATCGATACAATTTTAAATGTATCGACACTTTATGTGTGCAATTAGTTTGGCATTCATTCT
131 TTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTAGTTTGGCATTCATTCT
*
20119 AGAC
196 GGAC
* * * * *
20123 AAAAAGTATCGACACAAATTTTAAAAGTGTCGATAAATAATGTAGACCTATTCTCTCATAAAATC
1 AAAATGTATCGACACAAACTTAAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAATC
* *
20188 GATATATTTATACCGGTTACATTGTAAATTTACCTATTATATTATAATTATGGGTTTCGATGTTT
66 GGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATGGGTTTCGATGTTT
* *
20253 TTAGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTAGTTTGACATTCATTCT
131 TTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTAGTTTGGCATTCATTCT
*
20318 GGAA
196 GGAC
* *
20322 AAAAAGTATCGACACAAACTTAAAAAGTGTCGATACATTATGTAGACCTATTATCTCATAAAATC
1 AAAATGTATCGACACAAACTTAAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAATC
* * * *
20387 GGTATATTTATACCAGTTACATTGTAAATTTACCTATTACAATATAATTATTGGTTTTGATGTTT
66 GGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATGGGTTTCGATGTTT
** *
20452 TTGGGATAAATACAATTTTAAATGTATCGACACTTTATGCATGCACCTAGTTTGGCATTCATTCT
131 TTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTAGTTTGGCATTCATTCT
20517 GGAC
196 GGAC
* * * *
20521 AAAATGTATCGACACAAACCTAAAAAGTGTCGATACATTATGTAGACATATTCTCTTATAAAACC
1 AAAATGTATCGACACAAACTTAAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAATC
* *
20586 GGTATATTTATACCGGTTACATTGTAAATTTGCCTATTACATTATAATTATGGGTTTCGATATTT
66 GGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATGGGTTTCGATGTTT
* *
20651 TTGGGATAGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTAGTTTGACATTCATTCT
131 TTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTAGTTTGGCATTCATTCT
20716 GGAC
196 GGAC
* * * * *
20720 AAAATGTATCGACATAAACTTAAAAAGTATCGATACATTATGTAGACTTATTCTCTAATAAAACC
1 AAAATGTATCGACACAAACTTAAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAATC
* * *
20785 GATATATTTATATCGGTTACATTATAAATTTACCTATTACATTATAATTATGGGTTTCGATGTTT
66 GGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATGGGTTTCGATGTTT
* *
20850 TTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCATGCACCTAGTTTGACATTCATTCT
131 TTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTAGTTTGGCATTCATTCT
20915 GGAC
196 GGAC
*
20919 AAAATGTATCGACACAAACTTAAAAAGTGTCGATACATTATGTAGATCTATTCTCTCATAAAATC
1 AAAATGTATCGACACAAACTTAAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAATC
*
20984 GGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATGGATTTCGATGTTT
66 GGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATGGGTTTCGATGTTT
* * *
21049 TTGGGATCGATACAATTTTAAATGTATTGACACTTTATGTGTGCACCTAGTTTGGCATTTATTCT
131 TTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTAGTTTGGCATTCATTCT
*
21114 TGAC
196 GGAC
*
21118 AAAATGTATCGACACAAACTTAAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAACC
1 AAAATGTATCGACACAAACTTAAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAATC
* * * *
21183 GGTATATTTATATCGGTTACATTGTAAATTTACTTATTACATTATAATTTTGGATTTCGATGTTT
66 GGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATGGGTTTCGATGTTT
* *
21248 TTGGGATCGATACAATTTTAAATGTATCGAGACTTTATGTGTGCACCTAGTTTGGCATTCATTCT
131 TTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTAGTTTGGCATTCATTCT
21313 GGAC
196 GGAC
21317 AAAATGTATCGACACAAACTTAAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAATC
1 AAAATGTATCGACACAAACTTAAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAATC
*
21382 GGTATATTTATACCGGTTACATTATAAATTTACCTATTACATTATAATTATGGGTTTCGATGTTT
66 GGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATGGGTTTCGATGTTT
*
21447 TTGGGATCGATACAATTTTAAATGTATCGACACTTTATGTGTGCACCTAGTTTGGCATTCATTCT
131 TTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTAGTTTGGCATTCATTCT
21512 GGAC
196 GGAC
* *
21516 AAAATGTATCGACACAAACTTAAAAAGTGTCGATACATTATGTAGACTTATTTTCTCATAAAAAT
1 AAAATGTATCGACACAAACTTAAAAAGTGTCGATACATTATGTAGACCTATTCTCTCAT-AAAAT
* * * * * * *
21581 -GGTATATTTATACCGGTTATATTGCAAAATTATCTATTATATTATAATTATGGGTTCCGATATT
65 CGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATGGGTTTCGATGTT
* ** * *
21645 TTTGTGATCGATACTTTTTATAAATGTATCGACACTTTATGCGTACACCTCGTTTGGGCATTCAT
130 TTTGGGATCGATACAATTT-TAAATGTATCGACACTTTATGCGTGCACCTAGTTT-GGCATTCAT
21710 TCTGGAC
193 TCTGGAC
* * * *
21717 AAAATGTATCGACACAAATTTCAAAAGTGTCGATACATTATGTAGACTTATTCTCTCATAAAACC
1 AAAATGTATCGACACAAACTTAAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAATC
* * * * *
21782 GGTATATTTCTGCCAGTTACATTGTAAATTTACCTATTACATTGTAATTATCGGTTTCGATGTTT
66 GGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATGGGTTTCGATGTTT
*
21847 TTGGGATCGATACAATTTTAAATGTATCGACACTATATGCGTGCACCTAGTTTGGCATTCATTCT
131 TTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTAGTTTGGCATTCATTCT
21912 GGAC
196 GGAC
* * * * * * * * * *
21916 AAAAGGTATCAACACAAATTTCAAAAGTATCGATACATTATGTTGACCTGTTTTCTAATTAAATC
1 AAAATGTATCGACACAAACTTAAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAATC
* *
21981 GGTATATTTATACTGGTTATATTG
66 GGTATATTTATACCGGTTACATTG
22005 CAAAATTAGG
Statistics
Matches: 1734, Mismatches: 144, Indels: 8
0.92 0.08 0.00
Matches are distributed among these distances:
199 1521 0.88
200 73 0.04
201 140 0.08
ACGTcount: A:0.33, C:0.15, G:0.14, T:0.38
Consensus pattern (199 bp):
AAAATGTATCGACACAAACTTAAAAAGTGTCGATACATTATGTAGACCTATTCTCTCATAAAATC
GGTATATTTATACCGGTTACATTGTAAATTTACCTATTACATTATAATTATGGGTTTCGATGTTT
TTGGGATCGATACAATTTTAAATGTATCGACACTTTATGCGTGCACCTAGTTTGGCATTCATTCT
GGAC
Found at i:23893 original size:14 final size:15
Alignment explanation
Indices: 23871--23899 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
23861 ATCATTTTTA
23871 TTTCACCCTTCATCT
1 TTTCACCCTTCATCT
23886 TTTC-CCCTTCATCT
1 TTTCACCCTTCATCT
23900 AAGTTTTTCT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 10 0.71
15 4 0.29
ACGTcount: A:0.10, C:0.41, G:0.00, T:0.48
Consensus pattern (15 bp):
TTTCACCCTTCATCT
Found at i:26723 original size:180 final size:180
Alignment explanation
Indices: 26426--26902 Score: 652
Period size: 180 Copynumber: 2.6 Consensus size: 180
26416 TATGCATACT
* * *
26426 TATTAAAGTATCGACACTTTCGACATATCTAGTAGCGCTTTACCGGTCTTGTCATTTCGAGATCG
1 TATTAAAGTATCGACACTTTCAACATATCCAGTAGCGCTTTACCGGTTTTGTCATTTCGAGATCG
* * *
26491 GTTTTGTCATATTTTTATCTGTTATATTGTTATTGATCGATATATTTTTATAAAGTATCGACACT
66 G--TTGTCATATTTTTACCTGTTATATTGTTATAGATCGATACATTTTTATAAAGTATCGACACT
* * *
26556 TTATAGGCGCTATTATTGTTTCTCTTTTAAATTTCCAAAGTGTCGATACTTA
129 TTATAGGCACTATTACTGCTTCTCTTTTAAATTTCCAAAGTGTCGATACTTA
* *
26608 TATTAAAGTATCGACACTTTCAACATATCCGGTAGCGCTTTACCGGTTTTGTCATTTCGAGACCG
1 TATTAAAGTATCGACACTTTCAACATATCCAGTAGCGCTTTACCGGTTTTGTCATTTCGAGATCG
*
26673 GTTGTCATATTTTTACCTGTTATATTGTTATGGATCGATACATTTTTATAAAGTATCGACACTTT
66 GTTGTCATATTTTTACCTGTTATATTGTTATAGATCGATACATTTTTATAAAGTATCGACACTTT
*
26738 ATAGGCACTATTACTGCTTCTCTTTTAAATTTCCAAAGTGTCGATATTTA
131 ATAGGCACTATTACTGCTTCTCTTTTAAATTTCCAAAGTGTCGATACTTA
** ** * **** * *
26788 T-TTCAATCTAATTAATACTTTCAACATATCCAGTAATATTTTACCGGTTTTGTCATAAT-GAAA
1 TATT-AAAGT-ATCGACACTTTCAACATATCCAGTAGCGCTTTACCGGTTTTGTCAT-TTCGAGA
* * *
26851 TCGATTTTCATATTTTTACCTGTTATATTGATATAGATCGATACATTTTTAT
63 TCGGTTGTCATATTTTTACCTGTTATATTGTTATAGATCGATACATTTTTAT
26903 TTGTATCGAC
Statistics
Matches: 263, Mismatches: 29, Indels: 7
0.88 0.10 0.02
Matches are distributed among these distances:
179 2 0.01
180 111 0.42
181 88 0.33
182 62 0.24
ACGTcount: A:0.27, C:0.16, G:0.13, T:0.44
Consensus pattern (180 bp):
TATTAAAGTATCGACACTTTCAACATATCCAGTAGCGCTTTACCGGTTTTGTCATTTCGAGATCG
GTTGTCATATTTTTACCTGTTATATTGTTATAGATCGATACATTTTTATAAAGTATCGACACTTT
ATAGGCACTATTACTGCTTCTCTTTTAAATTTCCAAAGTGTCGATACTTA
Found at i:33822 original size:14 final size:13
Alignment explanation
Indices: 33805--33862 Score: 55
Period size: 13 Copynumber: 4.3 Consensus size: 13
33795 TAATATTTTT
33805 ATTTTCATTTTATA
1 ATTTT-ATTTTATA
* *
33819 A-TTTATATTAATG
1 ATTTTAT-TTTATA
33832 ATTTTATTTTATA
1 ATTTTATTTTATA
*
33845 ATATTATTTCTATA
1 ATTTTATTT-TATA
33859 ATTT
1 ATTT
33863 AAAATTAGAT
Statistics
Matches: 35, Mismatches: 6, Indels: 6
0.74 0.13 0.13
Matches are distributed among these distances:
12 2 0.06
13 20 0.57
14 13 0.37
ACGTcount: A:0.33, C:0.03, G:0.02, T:0.62
Consensus pattern (13 bp):
ATTTTATTTTATA
Found at i:33851 original size:13 final size:12
Alignment explanation
Indices: 33798--33863 Score: 53
Period size: 13 Copynumber: 5.2 Consensus size: 12
33788 ATATTTTTAA
*
33798 TATTTT-TATTT
1 TATTTTATAATT
33809 TCATTTTATAATT
1 T-ATTTTATAATT
* *
33822 TATATTAATGATTT
1 TAT-TTTAT-AATT
33836 TATTTTATAATAT
1 TATTTTATAAT-T
33849 TATTTCTATAATT
1 TATTT-TATAATT
33862 TA
1 TA
33864 AAATTAGATT
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
11 1 0.02
12 9 0.20
13 22 0.50
14 12 0.27
ACGTcount: A:0.32, C:0.03, G:0.02, T:0.64
Consensus pattern (12 bp):
TATTTTATAATT
Found at i:36117 original size:2 final size:2
Alignment explanation
Indices: 36110--36145 Score: 63
Period size: 2 Copynumber: 18.0 Consensus size: 2
36100 TGGCCCCACA
*
36110 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AA AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
36146 TAAATCTGCC
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 32 1.00
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:43597 original size:14 final size:15
Alignment explanation
Indices: 43578--43606 Score: 51
Period size: 14 Copynumber: 2.0 Consensus size: 15
43568 CTCGATTTTA
43578 AAAATTAT-AAGTTT
1 AAAATTATCAAGTTT
43592 AAAATTATCAAGTTT
1 AAAATTATCAAGTTT
43607 GATTCAAATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
14 8 0.57
15 6 0.43
ACGTcount: A:0.48, C:0.03, G:0.07, T:0.41
Consensus pattern (15 bp):
AAAATTATCAAGTTT
Found at i:45271 original size:28 final size:25
Alignment explanation
Indices: 45240--45291 Score: 59
Period size: 28 Copynumber: 2.0 Consensus size: 25
45230 ATTTCAAAAT
45240 TATAATTATGAGAAAAAAATAATTTATA
1 TATAATTAT-A-AAAAAAAT-ATTTATA
* *
45268 TATATTTATAAATAAAATATTTAT
1 TATAATTATAAAAAAAATATTTAT
45292 TTATTTAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 6 0.27
26 7 0.32
27 1 0.05
28 8 0.36
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (25 bp):
TATAATTATAAAAAAAATATTTATA
Found at i:45298 original size:23 final size:26
Alignment explanation
Indices: 45250--45304 Score: 73
Period size: 23 Copynumber: 2.3 Consensus size: 26
45240 TATAATTATG
45250 AGAAA-AAAATAATTTATATATATTT
1 AGAAATAAAATAATTTATATATATTT
*
45275 ATAAATAAAAT-ATTTAT-T-TATTT
1 AGAAATAAAATAATTTATATATATTT
45298 AGAAATA
1 AGAAATA
45305 TCAGAAAAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 11 0.41
24 1 0.04
25 10 0.37
26 5 0.19
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.42
Consensus pattern (26 bp):
AGAAATAAAATAATTTATATATATTT
Found at i:45378 original size:23 final size:22
Alignment explanation
Indices: 45354--45398 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
45344 CTTCGATATT
45354 AATAAATATTAATATAATAATTTA
1 AATAAA-ATTAA-ATAATAATTTA
*
45378 AATAAAATTAAATTATAATTT
1 AATAAAATTAAATAATAATTT
45399 TTTATAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 9 0.45
23 5 0.25
24 6 0.30
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
AATAAAATTAAATAATAATTTA
Found at i:46578 original size:23 final size:21
Alignment explanation
Indices: 46538--46579 Score: 57
Period size: 23 Copynumber: 1.9 Consensus size: 21
46528 CTTTTTTTTT
*
46538 CTCTGTTTTTTGCTGGTTGTC
1 CTCTGTTTTTTGCAGGTTGTC
46559 CTCTGTTTTCTTTGCAGGTTG
1 CTCTG-TTT-TTTGCAGGTTG
46580 GGTGATGGCT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 5 0.28
22 3 0.17
23 10 0.56
ACGTcount: A:0.02, C:0.19, G:0.24, T:0.55
Consensus pattern (21 bp):
CTCTGTTTTTTGCAGGTTGTC
Found at i:46990 original size:3 final size:3
Alignment explanation
Indices: 46984--47038 Score: 69
Period size: 3 Copynumber: 18.7 Consensus size: 3
46974 TAATATTTAT
* *
46984 TAA TAA TAA -AA TAA TAA TAA TTA TAA TTA TAA TAA TAA TAA TAA T-A
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
47030 TAAA TAA TA
1 T-AA TAA TA
47039 TTTAAATGAA
Statistics
Matches: 45, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
2 4 0.09
3 39 0.87
4 2 0.04
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (3 bp):
TAA
Found at i:46998 original size:21 final size:21
Alignment explanation
Indices: 46972--47042 Score: 62
Period size: 21 Copynumber: 3.5 Consensus size: 21
46962 TTGGGCCTGT
46972 AATAATATTTATTAATAATAA
1 AATAATATTTATTAATAATAA
* * *
46993 AATAATAATAATT-ATAATTAT
1 AATAATATTTATTAATAA-TAA
47014 AATAATA---A-TAATAATATA
1 AATAATATTTATTAATAATA-A
47032 AATAATATTTA
1 AATAATATTTA
47043 AATGAAAAAA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
17 3 0.08
18 12 0.30
20 4 0.10
21 21 0.52
ACGTcount: A:0.59, C:0.00, G:0.00, T:0.41
Consensus pattern (21 bp):
AATAATATTTATTAATAATAA
Found at i:47398 original size:124 final size:120
Alignment explanation
Indices: 47168--47451 Score: 349
Period size: 124 Copynumber: 2.3 Consensus size: 120
47158 TGTTGAATAA
* * *
47168 ATTCTTCTCTTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCCACTGGGGATGATGTTGACCT
1 ATTCTT-TCTTT-TTCAGATGAGTTCTTCTCATTATGAACTTTCCACTGAGGATGATGCTAACCT
* * ** *
47233 ATTTCCTTCTGTGATAGAGTCATTTAAAAAGTTGAATAAGCTCTTCTCATTATGAAC
64 ATCTCCTTCTGTGATAGAATCATGCAAAAAGTTGAACAAGCTCTTCTCATTATGAAC
* *
47290 TTATTCTTTCTTTTTCAGATGAGTTCTTCTCATTATGAACTTT-CTCTAGAAAGGTTGATGCTAA
1 --ATTCTTTCTTTTTCAGATGAGTTCTTCTCATTATGAACTTTCCACT-G--AGGATGATGCTAA
* * * *
47354 TCTATCTGCTTCTGTGATAGAATTATGCAAAAGGTTGAACAAGCTCTTCTCATTATGAAC
61 CCTATCTCCTTCTGTGATAGAATCATGCAAAAAGTTGAACAAGCTCTTCTCATTATGAAC
*
47414 -TTC-TTCTTCTTCAGATGAGTTCTTCTCATTATGAACTT
1 ATTCTTTCTTTTTCAGATGAGTTCTTCTCATTATGAACTT
47452 CTTCTTCTTC
Statistics
Matches: 142, Mismatches: 15, Indels: 10
0.85 0.09 0.06
Matches are distributed among these distances:
120 34 0.24
121 6 0.04
122 31 0.22
123 5 0.04
124 66 0.46
ACGTcount: A:0.25, C:0.18, G:0.15, T:0.42
Consensus pattern (120 bp):
ATTCTTTCTTTTTCAGATGAGTTCTTCTCATTATGAACTTTCCACTGAGGATGATGCTAACCTAT
CTCCTTCTGTGATAGAATCATGCAAAAAGTTGAACAAGCTCTTCTCATTATGAAC
Found at i:47438 original size:36 final size:36
Alignment explanation
Indices: 47398--47559 Score: 306
Period size: 36 Copynumber: 4.5 Consensus size: 36
47388 TTGAACAAGC
47398 TCTTCTCATTATGAACTTCTTCTTCTTCAGATGAGT
1 TCTTCTCATTATGAACTTCTTCTTCTTCAGATGAGT
47434 TCTTCTCATTATGAACTTCTTCTTCTTCAGATGAGT
1 TCTTCTCATTATGAACTTCTTCTTCTTCAGATGAGT
*
47470 TCTTCTCATTATGAACTTATTCTTCTTCAGATGAGT
1 TCTTCTCATTATGAACTTCTTCTTCTTCAGATGAGT
*
47506 TCTTCTCATTATGAACTTCTTCTTCTTCAGATGACT
1 TCTTCTCATTATGAACTTCTTCTTCTTCAGATGAGT
47542 TCTTCTCATTATGAACTT
1 TCTTCTCATTATGAACTT
47560 TCTCTGGAAA
Statistics
Matches: 123, Mismatches: 3, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
36 123 1.00
ACGTcount: A:0.20, C:0.22, G:0.10, T:0.48
Consensus pattern (36 bp):
TCTTCTCATTATGAACTTCTTCTTCTTCAGATGAGT
Found at i:47636 original size:17 final size:17
Alignment explanation
Indices: 47614--47702 Score: 60
Period size: 17 Copynumber: 5.1 Consensus size: 17
47604 GTTGAACAAA
*
47614 TTCTTCTCATTATGAAT
1 TTCTTCTCATTATGAAC
* *
47631 TTCTTCTTTCA-GATG-AG
1 TTCTTC--TCATTATGAAC
47648 TTCTTCTCATTATGAAC
1 TTCTTCTCATTATGAAC
*
47665 TTCTTCTTC-TTCA-GATGAG
1 TTCTTC-TCATT-ATGA--AC
47684 TTCTTCTCATTATGAAC
1 TTCTTCTCATTATGAAC
47701 TT
1 TT
47703 TCTCTGGAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 20
0.68 0.07 0.24
Matches are distributed among these distances:
15 3 0.05
16 3 0.05
17 27 0.48
18 9 0.16
19 14 0.25
ACGTcount: A:0.20, C:0.20, G:0.10, T:0.49
Consensus pattern (17 bp):
TTCTTCTCATTATGAAC
Found at i:47657 original size:34 final size:36
Alignment explanation
Indices: 47614--47705 Score: 152
Period size: 36 Copynumber: 2.6 Consensus size: 36
47604 GTTGAACAAA
47614 TTCTTCTCATTATGAATTTCTTC-T-TTCAGATGAG
1 TTCTTCTCATTATGAATTTCTTCTTCTTCAGATGAG
*
47648 TTCTTCTCATTATGAACTTCTTCTTCTTCAGATGAG
1 TTCTTCTCATTATGAATTTCTTCTTCTTCAGATGAG
47684 TTCTTCTCATTATGAACTTTCT
1 TTCTTCTCATTATGAA-TTTCT
47706 CTGGAAAAGT
Statistics
Matches: 53, Mismatches: 2, Indels: 3
0.91 0.03 0.05
Matches are distributed among these distances:
34 22 0.42
35 1 0.02
36 26 0.49
37 4 0.08
ACGTcount: A:0.20, C:0.21, G:0.10, T:0.50
Consensus pattern (36 bp):
TTCTTCTCATTATGAATTTCTTCTTCTTCAGATGAG
Found at i:47658 original size:143 final size:143
Alignment explanation
Indices: 47469--48100 Score: 1061
Period size: 143 Copynumber: 4.4 Consensus size: 143
47459 TTCAGATGAG
47469 TTCTTCTCATTATGAACTTATTCTTC-TTCAGATGAGTTCTTCTCATTATGAACTTCTTCTTCTT
1 TTCTTCTCATTATGAA--T-TTCTTCTTTCAGATGAGTTCTTCTCATTATGAACTTCTTCTTCTT
*
47533 CAGATGACTTCTTCTCATTATGAACTTTCTCTGGAAAAGTTGATCCATCAAGTGATGGATTTGAA
63 CAGATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGTTGATCCATCAAGTGATGGATTTGAA
*
47598 CAAAAGGTTGAACAAA
128 CAAAAAGTTGAACAAA
47614 TTCTTCTCATTATGAATTTCTTCTTTCAGATGAGTTCTTCTCATTATGAACTTCTTCTTCTTCAG
1 TTCTTCTCATTATGAATTTCTTCTTTCAGATGAGTTCTTCTCATTATGAACTTCTTCTTCTTCAG
* *
47679 ATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGTTGATCCATCAAGTAATGGTTTTGAACAA
66 ATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGTTGATCCATCAAGTGATGGATTTGAACAA
47744 AAAGTTGAACAAA
131 AAAGTTGAACAAA
*
47757 TTCTTCTCATTATGAATTTCTTCTTTCAGATGAGTTCTTCTCATTTTGAACTTCTTCTTCTTCAG
1 TTCTTCTCATTATGAATTTCTTCTTTCAGATGAGTTCTTCTCATTATGAACTTCTTCTTCTTCAG
*
47822 ATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGTTGATCCATCAAGTGATGGTTTTGAACAA
66 ATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGTTGATCCATCAAGTGATGGATTTGAACAA
47887 AAAGTTGAACAAA
131 AAAGTTGAACAAA
47900 TTCTTCTCATTATGAATTTCTTCTTTCAGATGAGTTCTTCTCATTATGAACTTCTTCTTCTTCAG
1 TTCTTCTCATTATGAATTTCTTCTTTCAGATGAGTTCTTCTCATTATGAACTTCTTCTTCTTCAG
* * * *
47965 ATGAGTTCTTCTCATTATGAACTTTATCTGGAAAAGTTGATCCATCAAGTGAT-GAATTCAAGTA
66 ATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGTTGATCCATCAAGTGATGGATTTGAA-CA
*
48029 AAAAGTTGAACAAG
130 AAAAGTTGAACAAA
48043 TTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT
1 TTCTTCTCATTATGAA--T-TTCTT-C-T-TTCAGATGAGTTCTTCTCATTATGAACT
48101 CGAACTGGTA
Statistics
Matches: 466, Mismatches: 13, Indels: 12
0.95 0.03 0.02
Matches are distributed among these distances:
142 11 0.02
143 403 0.86
145 17 0.04
146 5 0.01
147 1 0.00
148 1 0.00
149 28 0.06
ACGTcount: A:0.27, C:0.18, G:0.13, T:0.42
Consensus pattern (143 bp):
TTCTTCTCATTATGAATTTCTTCTTTCAGATGAGTTCTTCTCATTATGAACTTCTTCTTCTTCAG
ATGAGTTCTTCTCATTATGAACTTTCTCTGGAAAAGTTGATCCATCAAGTGATGGATTTGAACAA
AAAGTTGAACAAA
Found at i:47771 original size:73 final size:72
Alignment explanation
Indices: 47684--47920 Score: 193
Period size: 73 Copynumber: 3.3 Consensus size: 72
47674 TTCAGATGAG
47684 TTCTTCTCATTATGAACTTTCTCTGGAAAAGTTGATCCATCAAGTAATGGTTTTGAACAAAAAGT
1 TTCTTCTCATTATGAA-TTTCTCTGGAAAAGTTGATCCATCAAGTAATGGTTTTGAACAAAAAGT
47749 TGAACAAA
65 TGAACAAA
*** * * * * ******
47757 TTCTTCTCATTATGAATTTCTTCT--TTCAGATGAGTTCTTC---TCA---TTTTGAACTTCTTC
1 TTCTTCTCATTATGAATTTC-TCTGGAAAAGTTGA-TCCATCAAGTAATGGTTTTGAACAAAAAG
***
47814 TTCTTCAGATGA
64 TTGAACA-A--A
*
47826 GTTCTTCTCATTATGAACTTTCTCTGGAAAAGTTGATCCATCAAGTGATGGTTTTGAACAAAAAG
1 -TTCTTCTCATTATGAA-TTTCTCTGGAAAAGTTGATCCATCAAGTAATGGTTTTGAACAAAAAG
47891 TTGAACAAA
64 TTGAACAAA
47900 TTCTTCTCATTATGAATTTCT
1 TTCTTCTCATTATGAATTTCT
47921 TCTTTCAGAT
Statistics
Matches: 117, Mismatches: 32, Indels: 31
0.65 0.18 0.17
Matches are distributed among these distances:
66 12 0.10
67 1 0.01
69 3 0.03
70 19 0.16
71 13 0.11
72 18 0.15
73 35 0.30
74 3 0.03
76 1 0.01
77 12 0.10
ACGTcount: A:0.29, C:0.17, G:0.14, T:0.41
Consensus pattern (72 bp):
TTCTTCTCATTATGAATTTCTCTGGAAAAGTTGATCCATCAAGTAATGGTTTTGAACAAAAAGTT
GAACAAA
Found at i:47800 original size:34 final size:36
Alignment explanation
Indices: 47757--47848 Score: 143
Period size: 36 Copynumber: 2.6 Consensus size: 36
47747 GTTGAACAAA
47757 TTCTTCTCATTATGAATTTCTTC-T-TTCAGATGAG
1 TTCTTCTCATTATGAATTTCTTCTTCTTCAGATGAG
* *
47791 TTCTTCTCATTTTGAACTTCTTCTTCTTCAGATGAG
1 TTCTTCTCATTATGAATTTCTTCTTCTTCAGATGAG
47827 TTCTTCTCATTATGAACTTTCT
1 TTCTTCTCATTATGAA-TTTCT
47849 CTGGAAAAGT
Statistics
Matches: 51, Mismatches: 4, Indels: 3
0.88 0.07 0.05
Matches are distributed among these distances:
34 21 0.41
35 1 0.02
36 25 0.49
37 4 0.08
ACGTcount: A:0.18, C:0.21, G:0.10, T:0.51
Consensus pattern (36 bp):
TTCTTCTCATTATGAATTTCTTCTTCTTCAGATGAG
Found at i:47922 original size:17 final size:17
Alignment explanation
Indices: 47900--47988 Score: 60
Period size: 17 Copynumber: 5.1 Consensus size: 17
47890 GTTGAACAAA
*
47900 TTCTTCTCATTATGAAT
1 TTCTTCTCATTATGAAC
* *
47917 TTCTTCTTTCA-GATG-AG
1 TTCTTC--TCATTATGAAC
47934 TTCTTCTCATTATGAAC
1 TTCTTCTCATTATGAAC
*
47951 TTCTTCTTC-TTCA-GATGAG
1 TTCTTC-TCATT-ATGA--AC
47970 TTCTTCTCATTATGAAC
1 TTCTTCTCATTATGAAC
47987 TT
1 TT
47989 TATCTGGAAA
Statistics
Matches: 56, Mismatches: 6, Indels: 20
0.68 0.07 0.24
Matches are distributed among these distances:
15 3 0.05
16 3 0.05
17 27 0.48
18 9 0.16
19 14 0.25
ACGTcount: A:0.20, C:0.20, G:0.10, T:0.49
Consensus pattern (17 bp):
TTCTTCTCATTATGAAC
Found at i:47943 original size:34 final size:36
Alignment explanation
Indices: 47900--47988 Score: 155
Period size: 36 Copynumber: 2.5 Consensus size: 36
47890 GTTGAACAAA
*
47900 TTCTTCTCATTATGAATTTCTTC-T-TTCAGATGAG
1 TTCTTCTCATTATGAACTTCTTCTTCTTCAGATGAG
47934 TTCTTCTCATTATGAACTTCTTCTTCTTCAGATGAG
1 TTCTTCTCATTATGAACTTCTTCTTCTTCAGATGAG
47970 TTCTTCTCATTATGAACTT
1 TTCTTCTCATTATGAACTT
47989 TATCTGGAAA
Statistics
Matches: 52, Mismatches: 1, Indels: 2
0.95 0.02 0.04
Matches are distributed among these distances:
34 22 0.42
35 1 0.02
36 29 0.56
ACGTcount: A:0.20, C:0.20, G:0.10, T:0.49
Consensus pattern (36 bp):
TTCTTCTCATTATGAACTTCTTCTTCTTCAGATGAG
Found at i:48096 original size:113 final size:113
Alignment explanation
Indices: 47932--48439 Score: 864
Period size: 113 Copynumber: 4.5 Consensus size: 113
47922 CTTTCAGATG
** *
47932 AGTTCTTCTCATTATGAA---CTTCTT-CTTCTTCAGATGAGTTCTTCTCATTATGAACTTTATC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAAC
* * * * * *
47993 TGGAAAAGTTGATCCA-TCAAGTGATGAATTCAAGTAAAAAGTTGAACA
66 TGGTAACGCTGATCCATTGAA-TCATGAATTCAAGCAAAAAGTTGAACA
48041 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAAC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAAC
*
48106 TGGTAACGCTGATCCATTGAATCATGAATTTAAGCAAAAAGTTGAACA
66 TGGTAACGCTGATCCATTGAATCATGAATTCAAGCAAAAAGTTGAACA
48154 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAAC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAAC
48219 TGGTAACGCTGATCCATTGAATCATGAATTCAAGCAAAAAGTTGAACA
66 TGGTAACGCTGATCCATTGAATCATGAATTCAAGCAAAAAGTTGAACA
48267 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAAC
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAAC
* *
48332 TGGTAACGCTGATCCATTGAATCAAGAATTCAAGAAAAAAGTTGAACA
66 TGGTAACGCTGATCCATTGAATCATGAATTCAAGCAAAAAGTTGAACA
48380 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT
1 AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACT
48440 TTTTTTCTGG
Statistics
Matches: 381, Mismatches: 13, Indels: 6
0.95 0.03 0.01
Matches are distributed among these distances:
109 18 0.05
112 6 0.02
113 354 0.93
114 3 0.01
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (113 bp):
AGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTCGAAC
TGGTAACGCTGATCCATTGAATCATGAATTCAAGCAAAAAGTTGAACA
Found at i:49497 original size:115 final size:114
Alignment explanation
Indices: 49167--49480 Score: 540
Period size: 115 Copynumber: 2.7 Consensus size: 114
49157 GATCATGCAG
* * *
49167 TTCATCTTT-TAATTCCAATGATTGGTTCTGTGGTTCCTACCGAACCAGATCAGATAACTCAAAG
1 TTCATCTTTCAAATT-CAATGATTGGTTCTGTGGTTTCTACCAAACCAGATCAGATAACTCAAAG
*
49231 AACACTTCCAGAAGATGCTATTGGGTCTTCTTATTTCTACTATGATCAAA
65 AACACTTCCAGAAGATGCTATTGAGTCTTCTTATTTCTACTATGATCAAA
*
49281 TTCATCTTTCGAATTCAATGATTGGTTCTGTGGTTTCATACCAAACCAGATCAGATAACTCAAAG
1 TTCATCTTTCAAATTCAATGATTGGTTCTGTGGTTTC-TACCAAACCAGATCAGATAACTCAAAG
* *
49346 AACACTTCCAGAAGATACTATTGAGTCTTCTTATTTCTACTATGATCATA
65 AACACTTCCAGAAGATGCTATTGAGTCTTCTTATTTCTACTATGATCAAA
49396 TTCATCTTTCAAATTCAATGATTGGTTCTGTGGTTTCTACCAAACCAGATCAGATAACTCAAAGA
1 TTCATCTTTCAAATTCAATGATTGGTTCTGTGGTTTCTACCAAACCAGATCAGATAACTCAAAGA
49461 ACACTTCCAGAAGATGCTAT
66 ACACTTCCAGAAGATGCTAT
49481 GAGCACATTT
Statistics
Matches: 190, Mismatches: 8, Indels: 4
0.94 0.04 0.02
Matches are distributed among these distances:
114 77 0.41
115 113 0.59
ACGTcount: A:0.31, C:0.21, G:0.14, T:0.34
Consensus pattern (114 bp):
TTCATCTTTCAAATTCAATGATTGGTTCTGTGGTTTCTACCAAACCAGATCAGATAACTCAAAGA
ACACTTCCAGAAGATGCTATTGAGTCTTCTTATTTCTACTATGATCAAA
Found at i:49554 original size:93 final size:93
Alignment explanation
Indices: 49385--49674 Score: 438
Period size: 93 Copynumber: 3.1 Consensus size: 93
49375 CTTATTTCTA
* * * * * ** * *
49385 CTATGATCATATTCATCTTTCAAATTCAATGATTGGTTCTGTGGTTTC-TACCAAACCAGATCAG
1 CTATGAGCACATTCATATTTCAAATCCAATGATTGGTTTTCAGGGTTCATATCAAACCAGATCAG
49449 ATAACTCAAAGAACACTTCCAGAAGATG
66 ATAACTCAAAGAACACTTCCAGAAGATG
*
49477 CTATGAGCACATTTATATTTCAAATCCAATGATTGGTTTTCAGGGTTCATATCAAACCAGATCAG
1 CTATGAGCACATTCATATTTCAAATCCAATGATTGGTTTTCAGGGTTCATATCAAACCAGATCAG
49542 ATAACTCAAAGAACACTTCCAGAAGATG
66 ATAACTCAAAGAACACTTCCAGAAGATG
* * ** *
49570 CTATGAACATATTCATATTTCAAATCCAATGATTGGTTTTTGGGGTTCATATCAAACTAGATCAG
1 CTATGAGCACATTCATATTTCAAATCCAATGATTGGTTTTCAGGGTTCATATCAAACCAGATCAG
49635 ATAACTCAAAGAACACTTCCAGAAGATG
66 ATAACTCAAAGAACACTTCCAGAAGATG
49663 CTATGAGCACAT
1 CTATGAGCACAT
49675 GGCACTTGTT
Statistics
Matches: 179, Mismatches: 18, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
92 39 0.22
93 140 0.78
ACGTcount: A:0.36, C:0.19, G:0.15, T:0.30
Consensus pattern (93 bp):
CTATGAGCACATTCATATTTCAAATCCAATGATTGGTTTTCAGGGTTCATATCAAACCAGATCAG
ATAACTCAAAGAACACTTCCAGAAGATG
Found at i:50682 original size:7 final size:7
Alignment explanation
Indices: 50670--50734 Score: 66
Period size: 7 Copynumber: 9.9 Consensus size: 7
50660 TCTTGACACC
50670 CTTTTTT
1 CTTTTTT
50677 CTTTTTT
1 CTTTTTT
**
50684 CTCCTTT
1 CTTTTTT
50691 -TTTTTT
1 CTTTTTT
50697 C-TTTTT
1 CTTTTTT
*
50703 -TTCTTT
1 CTTTTTT
*
50709 CTTCTTT
1 CTTTTTT
50716 -TTTTTT
1 CTTTTTT
50722 CTTTTTT
1 CTTTTTT
50729 CTTTTT
1 CTTTTT
50735 CTTCAAGCAT
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
6 18 0.38
7 30 0.62
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (7 bp):
CTTTTTT
Found at i:50689 original size:17 final size:17
Alignment explanation
Indices: 50669--50734 Score: 78
Period size: 17 Copynumber: 3.8 Consensus size: 17
50659 ATCTTGACAC
*
50669 CCTTTTTTCTTTTTTCT
1 CCTTTTTTCTTTTTTTT
*
50686 CCTTTTTTTTTCTTTTTT
1 CCTTTTTTCTT-TTTTTT
* *
50704 TCTTTCTTCTTTTTTTT
1 CCTTTTTTCTTTTTTTT
*
50721 TCTTTTTTCTTTTT
1 CCTTTTTTCTTTTT
50735 CTTCAAGCAT
Statistics
Matches: 42, Mismatches: 6, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
17 29 0.69
18 13 0.31
ACGTcount: A:0.00, C:0.18, G:0.00, T:0.82
Consensus pattern (17 bp):
CCTTTTTTCTTTTTTTT
Found at i:50692 original size:10 final size:9
Alignment explanation
Indices: 50671--50734 Score: 55
Period size: 8 Copynumber: 7.3 Consensus size: 9
50661 CTTGACACCC
50671 TTTTT-TCT
1 TTTTTCTCT
50679 TTTTTCTCCTT
1 TTTTTCT-C-T
*
50690 TTTTTTTCT
1 TTTTTCTCT
50699 TTTTT-TCT
1 TTTTTCTCT
*
50707 TTCTTCT-T
1 TTTTTCTCT
*
50715 TTTTTTTCT
1 TTTTTCTCT
50724 TTTTTCT-T
1 TTTTTCTCT
50732 TTT
1 TTT
50735 CTTCAAGCAT
Statistics
Matches: 46, Mismatches: 5, Indels: 10
0.75 0.08 0.16
Matches are distributed among these distances:
8 22 0.48
9 15 0.33
10 2 0.04
11 7 0.15
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (9 bp):
TTTTTCTCT
Found at i:50696 original size:13 final size:12
Alignment explanation
Indices: 50678--50736 Score: 66
Period size: 13 Copynumber: 4.7 Consensus size: 12
50668 CCCTTTTTTC
50678 TTTTTTCTCCTTT
1 TTTTTTCT-CTTT
50691 TTTTTTCT-TTT
1 TTTTTTCTCTTT
50702 TTTCTTTCTTCTTT
1 TTT-TTTC-TCTTT
*
50716 TTTTTTCTTTTT
1 TTTTTTCTCTTT
50728 TCTTTTTCT
1 T-TTTTTCT
50737 TCAAGCATAT
Statistics
Matches: 41, Mismatches: 1, Indels: 8
0.82 0.02 0.16
Matches are distributed among these distances:
11 6 0.15
12 9 0.22
13 20 0.49
14 6 0.15
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (12 bp):
TTTTTTCTCTTT
Found at i:50701 original size:25 final size:24
Alignment explanation
Indices: 50673--50733 Score: 86
Period size: 25 Copynumber: 2.4 Consensus size: 24
50663 TGACACCCTT
50673 TTTTCTTTTTTCTCCTTTTTTTTTC
1 TTTT-TTTTTTCTCCTTTTTTTTTC
*
50698 TTTTTTTCTTTCTTCTTTTTTTTTC
1 TTTTTTT-TTTCTCCTTTTTTTTTC
50723 TTTTTTCTTTT
1 TTTTTT-TTTT
50734 TCTTCAAGCA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
24 3 0.09
25 29 0.88
26 1 0.03
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (24 bp):
TTTTTTTTTTCTCCTTTTTTTTTC
Found at i:61968 original size:28 final size:25
Alignment explanation
Indices: 61937--61988 Score: 59
Period size: 28 Copynumber: 2.0 Consensus size: 25
61927 ATTTCAAAAT
61937 TATAATTATGAGAAAAAAATAATTTATA
1 TATAATTAT-A-AAAAAAAT-ATTTATA
* *
61965 TATATTTATAAATAAAATATTTAT
1 TATAATTATAAAAAAAATATTTAT
61989 TTATTTAGAA
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
25 6 0.27
26 7 0.32
27 1 0.05
28 8 0.36
ACGTcount: A:0.54, C:0.00, G:0.04, T:0.42
Consensus pattern (25 bp):
TATAATTATAAAAAAAATATTTATA
Found at i:61995 original size:23 final size:26
Alignment explanation
Indices: 61947--62001 Score: 73
Period size: 23 Copynumber: 2.3 Consensus size: 26
61937 TATAATTATG
61947 AGAAA-AAAATAATTTATATATATTT
1 AGAAATAAAATAATTTATATATATTT
*
61972 ATAAATAAAAT-ATTTAT-T-TATTT
1 AGAAATAAAATAATTTATATATATTT
61995 AGAAATA
1 AGAAATA
62002 TCAGAAAAGG
Statistics
Matches: 27, Mismatches: 2, Indels: 4
0.82 0.06 0.12
Matches are distributed among these distances:
23 11 0.41
24 1 0.04
25 10 0.37
26 5 0.19
ACGTcount: A:0.55, C:0.00, G:0.04, T:0.42
Consensus pattern (26 bp):
AGAAATAAAATAATTTATATATATTT
Found at i:62075 original size:23 final size:22
Alignment explanation
Indices: 62051--62095 Score: 63
Period size: 22 Copynumber: 2.0 Consensus size: 22
62041 CTTCGATATT
62051 AATAAATATTAATATAATAATTTA
1 AATAAA-ATTAA-ATAATAATTTA
*
62075 AATAAAATTAAATTATAATTT
1 AATAAAATTAAATAATAATTT
62096 TTTATAATAT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 9 0.45
23 5 0.25
24 6 0.30
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (22 bp):
AATAAAATTAAATAATAATTTA
Found at i:63681 original size:3 final size:3
Alignment explanation
Indices: 63675--63732 Score: 84
Period size: 3 Copynumber: 19.7 Consensus size: 3
63665 TAATATTTAT
*
63675 TAA TAA TAA -AA TAA TAA TAA TAA TAA TTA TAA TAA TAA TAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA
63722 T-A TAAA TAA TA
1 TAA T-AA TAA TA
63733 TTTAAATGAA
Statistics
Matches: 50, Mismatches: 2, Indels: 6
0.86 0.03 0.10
Matches are distributed among these distances:
2 4 0.08
3 44 0.88
4 2 0.04
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
TAA
Found at i:63733 original size:9 final size:10
Alignment explanation
Indices: 63662--63733 Score: 68
Period size: 9 Copynumber: 7.9 Consensus size: 10
63652 ATTGGGCCTG
*
63662 TAATAATATT
1 TAATAATATA
*
63672 TATTAATA-A
1 TAATAATATA
63681 TAA-AATA-A
1 TAATAATATA
63689 TAATAATA-A
1 TAATAATATA
*
63698 TAATTATA-A
1 TAATAATATA
63707 TAATAATA-A
1 TAATAATATA
63716 TAATAATATA
1 TAATAATATA
63726 -AATAATAT
1 TAATAATAT
63734 TTAAATGAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
8 8 0.15
9 39 0.71
10 8 0.15
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (10 bp):
TAATAATATA
Found at i:69316 original size:24 final size:22
Alignment explanation
Indices: 69267--69321 Score: 53
Period size: 22 Copynumber: 2.5 Consensus size: 22
69257 GAGATAGTAA
*
69267 GGTTGAG--TTAGGATTTTTAG
1 GGTTGAGTTTTAGGATATTTAG
69287 GGTTGA-TTTTAGGAGTATTTAG
1 GGTTGAGTTTTAGGA-TATTTAG
69309 GGATTTGAGTTTT
1 GG--TTGAGTTTT
69322 TTTTTGTAAT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
20 6 0.21
21 6 0.21
22 8 0.29
24 4 0.14
25 4 0.14
ACGTcount: A:0.20, C:0.00, G:0.33, T:0.47
Consensus pattern (22 bp):
GGTTGAGTTTTAGGATATTTAG
Found at i:71328 original size:21 final size:21
Alignment explanation
Indices: 71194--71337 Score: 93
Period size: 21 Copynumber: 7.0 Consensus size: 21
71184 CGTTGCGATT
*
71194 TTGGACTATCGCAA--CGAAT
1 TTGGACTATCGCAACGCGAAC
* *
71213 TTGGAATAAATTGCAACGCGAAC
1 TTGGACT--ATCGCAACGCGAAC
* *
71236 TTGGACCATCGCAA--CGAAT
1 TTGGACTATCGCAACGCGAAC
* *
71255 TTGGAATAAATCGCAACGTGAAC
1 TTGGACT--ATCGCAACGCGAAC
* *
71278 TTCGACTATCGCAA--CGAAT
1 TTGGACTATCGCAACGCGAAC
**
71297 TTGGAAAATCGCAACGCGAAC
1 TTGGACTATCGCAACGCGAAC
* *
71318 TTCGACTATCGCAATGCGAA
1 TTGGACTATCGCAACGCGAA
71338 TATGTAAATC
Statistics
Matches: 92, Mismatches: 23, Indels: 18
0.69 0.17 0.14
Matches are distributed among these distances:
19 29 0.32
21 46 0.50
23 17 0.18
ACGTcount: A:0.35, C:0.22, G:0.21, T:0.22
Consensus pattern (21 bp):
TTGGACTATCGCAACGCGAAC
Found at i:71338 original size:42 final size:42
Alignment explanation
Indices: 71197--71331 Score: 220
Period size: 42 Copynumber: 3.3 Consensus size: 42
71187 TGCGATTTTG
* *
71197 GACTATCGCAACGAATTTGGAATAAATTGCAACGCGAACTTG
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
* *
71239 GACCATCGCAACGAATTTGGAATAAATCGCAACGTGAACTTC
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
71281 GACTATCGCAACGAATTTGG-A-AAATCGCAACGCGAACTTC
1 GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
71321 GACTATCGCAA
1 GACTATCGCAA
71332 TGCGAATATG
Statistics
Matches: 87, Mismatches: 6, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
40 29 0.33
41 1 0.01
42 57 0.66
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.21
Consensus pattern (42 bp):
GACTATCGCAACGAATTTGGAATAAATCGCAACGCGAACTTC
Found at i:71371 original size:21 final size:21
Alignment explanation
Indices: 71346--71391 Score: 65
Period size: 21 Copynumber: 2.2 Consensus size: 21
71336 AATATGTAAA
*
71346 TCGCATTGCGATAGTCCAAGT
1 TCGCATTGCAATAGTCCAAGT
* *
71367 TCGCATTGCAATAGTCGAATT
1 TCGCATTGCAATAGTCCAAGT
71388 TCGC
1 TCGC
71392 GTTGTGAATC
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.24, C:0.24, G:0.22, T:0.30
Consensus pattern (21 bp):
TCGCATTGCAATAGTCCAAGT
Found at i:80507 original size:24 final size:25
Alignment explanation
Indices: 80477--80524 Score: 80
Period size: 25 Copynumber: 2.0 Consensus size: 25
80467 ACGGTTAATG
80477 GGTCGGGTC-AAACCGGGTCAAACC
1 GGTCGGGTCAAAACCGGGTCAAACC
*
80501 GGTCGGGTCAAAACTGGGTCAAAC
1 GGTCGGGTCAAAACCGGGTCAAAC
80525 TGCCCCAACA
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
24 9 0.41
25 13 0.59
ACGTcount: A:0.27, C:0.25, G:0.33, T:0.15
Consensus pattern (25 bp):
GGTCGGGTCAAAACCGGGTCAAACC
Found at i:82529 original size:23 final size:23
Alignment explanation
Indices: 82503--82547 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
82493 CACCACAGCT
*
82503 CGTATAAATGCACCGAAGTGCCG
1 CGTAGAAATGCACCGAAGTGCCG
* *
82526 CGTAGAATTGCACCGTAGTGCC
1 CGTAGAAATGCACCGAAGTGCC
82548 ATATAATAAT
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.20
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCG
Found at i:88662 original size:18 final size:18
Alignment explanation
Indices: 88639--88745 Score: 160
Period size: 18 Copynumber: 5.9 Consensus size: 18
88629 ACTAAATATT
*
88639 TGTCCTGAAGGACCACTA
1 TGTCCCGAAGGACCACTA
*
88657 TGTCCTGAAGGACCACTA
1 TGTCCCGAAGGACCACTA
* *
88675 TGTCCCAAAGGACCATTA
1 TGTCCCGAAGGACCACTA
88693 TGTCCCGAAGGACCACTA
1 TGTCCCGAAGGACCACTA
*
88711 TGTCCCAAAGGACCACTA
1 TGTCCCGAAGGACCACTA
*
88729 TATCCCGAAGGACCACT
1 TGTCCCGAAGGACCACT
88746 GATAATCCCT
Statistics
Matches: 81, Mismatches: 8, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 81 1.00
ACGTcount: A:0.30, C:0.31, G:0.20, T:0.20
Consensus pattern (18 bp):
TGTCCCGAAGGACCACTA
Found at i:89402 original size:19 final size:19
Alignment explanation
Indices: 89378--89425 Score: 87
Period size: 19 Copynumber: 2.5 Consensus size: 19
89368 AGCAGGTGCG
89378 TCGATGCACTCCTTATGCA
1 TCGATGCACTCCTTATGCA
*
89397 TCGATGCACTTCTTATGCA
1 TCGATGCACTCCTTATGCA
89416 TCGATGCACT
1 TCGATGCACT
89426 AATTGCATTC
Statistics
Matches: 28, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 28 1.00
ACGTcount: A:0.21, C:0.29, G:0.17, T:0.33
Consensus pattern (19 bp):
TCGATGCACTCCTTATGCA
Found at i:90025 original size:2 final size:2
Alignment explanation
Indices: 90018--90056 Score: 78
Period size: 2 Copynumber: 19.5 Consensus size: 2
90008 CGTGTAACTA
90018 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
90057 CCTTCTTTAA
Statistics
Matches: 37, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 37 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:92377 original size:23 final size:23
Alignment explanation
Indices: 92351--92417 Score: 98
Period size: 23 Copynumber: 2.9 Consensus size: 23
92341 CACCACAGCT
*
92351 CGTATAAATGCACCGAAGTGCCA
1 CGTAGAAATGCACCGAAGTGCCA
* * *
92374 CGTAGAATTGCACCGTAGTGCCG
1 CGTAGAAATGCACCGAAGTGCCA
92397 CGTAGAAATGCACCGAAGTGC
1 CGTAGAAATGCACCGAAGTGC
92418 GATATAAGGT
Statistics
Matches: 38, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.30, C:0.25, G:0.27, T:0.18
Consensus pattern (23 bp):
CGTAGAAATGCACCGAAGTGCCA
Found at i:98675 original size:18 final size:18
Alignment explanation
Indices: 98652--98688 Score: 65
Period size: 18 Copynumber: 2.1 Consensus size: 18
98642 ACTGAATATT
*
98652 TGTCCCAAATGACCACTA
1 TGTCCCAAAGGACCACTA
98670 TGTCCCAAAGGACCACTA
1 TGTCCCAAAGGACCACTA
98688 T
1 T
98689 ATCCTGAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
18 18 1.00
ACGTcount: A:0.32, C:0.32, G:0.14, T:0.22
Consensus pattern (18 bp):
TGTCCCAAAGGACCACTA
Found at i:98704 original size:18 final size:18
Alignment explanation
Indices: 98654--98692 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
98644 TGAATATTTG
* *
98654 TCCCAAATGACCACTATG
1 TCCCAAAGGACCACTATA
98672 TCCCAAAGGACCACTATA
1 TCCCAAAGGACCACTATA
98690 TCC
1 TCC
98693 TGAAAGACCA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.33, C:0.36, G:0.10, T:0.21
Consensus pattern (18 bp):
TCCCAAAGGACCACTATA
Found at i:99953 original size:2 final size:2
Alignment explanation
Indices: 99946--100021 Score: 152
Period size: 2 Copynumber: 38.0 Consensus size: 2
99936 CGTGTAACTA
99946 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
99988 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
100022 CCCTTCTTTA
Statistics
Matches: 74, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 74 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:100349 original size:52 final size:53
Alignment explanation
Indices: 100218--100361 Score: 236
Period size: 53 Copynumber: 2.7 Consensus size: 53
100208 GGATCTCGAA
* * * * *
100218 AAAAATAATTTATAAAATAAGGTGAAACGTTTTTAAAAATATCAATATTTCTT
1 AAAAATAATTCATAAAATAAGGTGACACGTTTTTGAAAATATCAAAATCTCTT
100271 AAAAATAATTCATAAAATAAGGTGACACGTTTTTGAAAATATCAAAATCTCTT
1 AAAAATAATTCATAAAATAAGGTGACACGTTTTTGAAAATATCAAAATCTCTT
100324 -AAAATAATTCATAAAATAAGGTGACACGTTTTTGAAAA
1 AAAAATAATTCATAAAATAAGGTGACACGTTTTTGAAAA
100362 AATCGAAGCC
Statistics
Matches: 86, Mismatches: 5, Indels: 1
0.93 0.05 0.01
Matches are distributed among these distances:
52 38 0.44
53 48 0.56
ACGTcount: A:0.49, C:0.08, G:0.10, T:0.33
Consensus pattern (53 bp):
AAAAATAATTCATAAAATAAGGTGACACGTTTTTGAAAATATCAAAATCTCTT
Found at i:101884 original size:18 final size:18
Alignment explanation
Indices: 101858--101906 Score: 89
Period size: 18 Copynumber: 2.7 Consensus size: 18
101848 CAAAGGTCAA
*
101858 CAGGTCGGGTCAACGAGT
1 CAGGCCGGGTCAACGAGT
101876 CAGGCCGGGTCAACGAGT
1 CAGGCCGGGTCAACGAGT
101894 CAGGCCGGGTCAA
1 CAGGCCGGGTCAA
101907 ACCGTGTCAA
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.22, C:0.27, G:0.39, T:0.12
Consensus pattern (18 bp):
CAGGCCGGGTCAACGAGT
Found at i:105260 original size:3 final size:3
Alignment explanation
Indices: 105247--105307 Score: 79
Period size: 3 Copynumber: 20.7 Consensus size: 3
105237 ATTTAAAAAA
* * *
105247 TAT TA- TAT TAT TAT TAT TGT TAT TAT TAT TAC TAT TAT CAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
105294 TAT AAT TAT TAT TA
1 TAT TAT TAT TAT TA
105308 ATATATTTAC
Statistics
Matches: 49, Mismatches: 8, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
2 2 0.04
3 47 0.96
ACGTcount: A:0.34, C:0.03, G:0.02, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:106730 original size:30 final size:30
Alignment explanation
Indices: 106669--106732 Score: 83
Period size: 30 Copynumber: 2.1 Consensus size: 30
106659 TGAATTCCTC
* **
106669 TTTTGTTGTTTTATTCTTTTAAATTTATGT
1 TTTTGTTGTTTTAATCCCTTAAATTTATGT
* *
106699 TTTTGTTGTTTTAATCCCTTAAGTTTTTGT
1 TTTTGTTGTTTTAATCCCTTAAATTTATGT
106729 TTTT
1 TTTT
106733 CTCTTGCAGC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 29 1.00
ACGTcount: A:0.14, C:0.06, G:0.11, T:0.69
Consensus pattern (30 bp):
TTTTGTTGTTTTAATCCCTTAAATTTATGT
Found at i:109623 original size:103 final size:103
Alignment explanation
Indices: 109439--109664 Score: 364
Period size: 103 Copynumber: 2.2 Consensus size: 103
109429 GTCGAGGGTC
* * *
109439 TATGTGGTCCTTCGGGACATAAATGTATTCTTTGGAACATGTGTGAAGTCTGTTGAGACGCATAC
1 TATGTGGTCCTTTGGGACATAAATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
* * *
109504 TTGATTCTTGGCATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGCATATGTATATGATTCTTAAGGAATGA
*
109542 TATGTGGTCCTTTGGGACATATATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
1 TATGTGGTCCTTTGGGACATAAATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
*
109607 TTGATCCCTAGTATATGTATATGATTCTTAAGGAATGA
66 TTGATCCCTAGCATATGTATATGATTCTTAAGGAATGA
109645 TATGTGGTCCTTAT-GGACAT
1 TATGTGGTCCTT-TGGGACAT
109665 TATTATATGG
Statistics
Matches: 114, Mismatches: 8, Indels: 2
0.92 0.06 0.02
Matches are distributed among these distances:
103 113 0.99
104 1 0.01
ACGTcount: A:0.26, C:0.13, G:0.24, T:0.37
Consensus pattern (103 bp):
TATGTGGTCCTTTGGGACATAAATGTATTCTTTGGAACATGTGTGAAGTCTGGTGAGACACATAC
TTGATCCCTAGCATATGTATATGATTCTTAAGGAATGA
Found at i:109706 original size:23 final size:23
Alignment explanation
Indices: 109672--109735 Score: 101
Period size: 23 Copynumber: 2.8 Consensus size: 23
109662 CATTATTATA
109672 TGGCACTACGGTGCAATTCTACG
1 TGGCACTACGGTGCAATTCTACG
*
109695 TGGCACTCCGGTGCAATTCTACG
1 TGGCACTACGGTGCAATTCTACG
* *
109718 TGGCACTTCGGTGTAATT
1 TGGCACTACGGTGCAATT
109736 ATATGAGCTG
Statistics
Matches: 38, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.19, C:0.25, G:0.27, T:0.30
Consensus pattern (23 bp):
TGGCACTACGGTGCAATTCTACG
Found at i:114167 original size:2 final size:2
Alignment explanation
Indices: 114162--114190 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
114152 AAAAAAAATA
114162 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
114191 CAATAAAGCT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:115593 original size:60 final size:64
Alignment explanation
Indices: 115517--115686 Score: 222
Period size: 60 Copynumber: 2.7 Consensus size: 64
115507 ATAATATTCG
*
115517 AGATTGTATTTCAACTTCACAACGAATGATATCCAACTCAAAGCCAATTTGGTGAA-ACAA-T-
1 AGATTGGATTTCAACTTCACAACGAATGATATCCAACTCAAAGCCAATTTGGTGAAGACAACTA
* * *
115578 A-CTTGGATTTCAACTTCACAATGAATGATATCCAACCCAAAGCCAATTTGGTGAAGTACAACTC
1 AGATTGGATTTCAACTTCACAACGAATGATATCCAACTCAAAGCCAATTTGGTGAAG-ACAACT-
115642 A
64 A
* * * *
115643 AGATTGTATTTCAACTTCACAACGAAGGATATCTAACTCGAAGC
1 AGATTGGATTTCAACTTCACAACGAATGATATCCAACTCAAAGC
115687 TCAACTTCAC
Statistics
Matches: 92, Mismatches: 11, Indels: 7
0.84 0.10 0.06
Matches are distributed among these distances:
60 50 0.54
61 1 0.01
62 4 0.04
63 1 0.01
65 1 0.01
66 35 0.38
ACGTcount: A:0.38, C:0.21, G:0.14, T:0.27
Consensus pattern (64 bp):
AGATTGGATTTCAACTTCACAACGAATGATATCCAACTCAAAGCCAATTTGGTGAAGACAACTA
Found at i:116173 original size:40 final size:40
Alignment explanation
Indices: 116118--116224 Score: 153
Period size: 40 Copynumber: 2.7 Consensus size: 40
116108 TGGTCTGTCG
* * *
116118 TCCTCATCACGTAGGAACCGTGTCATCCCTCTACTAGGTC
1 TCCTCATCACATAGGAACCGTGTCATCCCTCGACTAGATC
*
116158 TCCTCATCACATAGGAACCGTATCATCCCTCGACTAGATC
1 TCCTCATCACATAGGAACCGTGTCATCCCTCGACTAGATC
*
116198 TCCTCATCA-AGTAGGAACTGTGTCATC
1 TCCTCATCACA-TAGGAACCGTGTCATC
116225 ATCCTTAGAT
Statistics
Matches: 60, Mismatches: 6, Indels: 2
0.88 0.09 0.03
Matches are distributed among these distances:
39 1 0.02
40 59 0.98
ACGTcount: A:0.24, C:0.33, G:0.16, T:0.27
Consensus pattern (40 bp):
TCCTCATCACATAGGAACCGTGTCATCCCTCGACTAGATC
Found at i:116428 original size:3 final size:3
Alignment explanation
Indices: 116415--116514 Score: 184
Period size: 3 Copynumber: 33.7 Consensus size: 3
116405 CCTTAAAAAA
*
116415 TAT TA- TAT TAT TAT TAT TAT TGT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
116462 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
116510 TAT TA
1 TAT TA
116515 ACATATTTAC
Statistics
Matches: 94, Mismatches: 2, Indels: 2
0.96 0.02 0.02
Matches are distributed among these distances:
2 2 0.02
3 92 0.98
ACGTcount: A:0.33, C:0.00, G:0.01, T:0.66
Consensus pattern (3 bp):
TAT
Found at i:117918 original size:30 final size:30
Alignment explanation
Indices: 117856--117919 Score: 74
Period size: 30 Copynumber: 2.1 Consensus size: 30
117846 TGAATTCTTG
* * **
117856 TTTTGTTGTTTTATTCTTTTAAATTTCAGT
1 TTTTGATGTTTTAATCCCTTAAATTTCAGT
* *
117886 TTTTGATGTTTTAATCCCTTAAGTTTCTGT
1 TTTTGATGTTTTAATCCCTTAAATTTCAGT
117916 TTTT
1 TTTT
117920 CTCTTGCATC
Statistics
Matches: 28, Mismatches: 6, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.16, C:0.09, G:0.11, T:0.64
Consensus pattern (30 bp):
TTTTGATGTTTTAATCCCTTAAATTTCAGT
Found at i:123755 original size:18 final size:20
Alignment explanation
Indices: 123715--123757 Score: 54
Period size: 20 Copynumber: 2.2 Consensus size: 20
123705 TGGTTTACGA
* *
123715 AATATAAGATTACCAGTGGG
1 AATAAAAGATTACCAGTGAG
123735 AATAAAAGATTACC-G-GAG
1 AATAAAAGATTACCAGTGAG
123753 AATAA
1 AATAA
123758 GATTACTAGG
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
18 7 0.33
19 1 0.05
20 13 0.62
ACGTcount: A:0.49, C:0.09, G:0.21, T:0.21
Consensus pattern (20 bp):
AATAAAAGATTACCAGTGAG
Found at i:124136 original size:36 final size:36
Alignment explanation
Indices: 124096--124164 Score: 120
Period size: 36 Copynumber: 1.9 Consensus size: 36
124086 ATATAGCATG
*
124096 TGTCACGTCACCAAAAATGATATAATTAAAAATATA
1 TGTCACGTCACCAAAAATAATATAATTAAAAATATA
*
124132 TGTCACGTTACCAAAAATAATATAATTAAAAAT
1 TGTCACGTCACCAAAAATAATATAATTAAAAAT
124165 TGATAATATA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
36 31 1.00
ACGTcount: A:0.51, C:0.13, G:0.07, T:0.29
Consensus pattern (36 bp):
TGTCACGTCACCAAAAATAATATAATTAAAAATATA
Found at i:124828 original size:166 final size:166
Alignment explanation
Indices: 124565--124886 Score: 594
Period size: 166 Copynumber: 1.9 Consensus size: 166
124555 AGATATCTAA
*
124565 AAGTGGCACACGTCACTATTATTTAAATTAAAATATTAAAATTATATATATATATTATAAAAACT
1 AAGTGGCACACGTCACTATTATTTAAATTAAAATATTAAAATTATATATATATATTAGAAAAACT
124630 CAAATTTTATAAAATTAGATATAAAAAATTAAAATCTTTAAAATCCCTAATTTCAATCCTCCATA
66 CAAATTTTATAAAATTAGATATAAAAAATTAAAATCTTTAAAATCCCTAATTTCAATCCTCCATA
124695 TCTTCGTTGGCCTCCAAAACTCCGTTAAAAACTATT
131 TCTTCGTTGGCCTCCAAAACTCCGTTAAAAACTATT
124731 AAGTGGCACACGTCACTATTATTTAAATTAAAATATTAAAA-T-TATATATATATTAGAAAAACT
1 AAGTGGCACACGTCACTATTATTTAAATTAAAATATTAAAATTATATATATATATTAGAAAAACT
*
124794 CAAATTTTATAAAATTATATATAAAAAAAATTAAAATCTTTAAAATCCCTAATTTCAATCCTCCA
66 CAAATTTTATAAAATTAGATAT--AAAAAATTAAAATCTTTAAAATCCCTAATTTCAATCCTCCA
124859 TATCTTCGTTGGCCTCCAAAACTCCGTT
129 TATCTTCGTTGGCCTCCAAAACTCCGTT
124887 GATCAATCTA
Statistics
Matches: 152, Mismatches: 2, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
164 41 0.27
165 1 0.01
166 110 0.72
ACGTcount: A:0.43, C:0.16, G:0.06, T:0.35
Consensus pattern (166 bp):
AAGTGGCACACGTCACTATTATTTAAATTAAAATATTAAAATTATATATATATATTAGAAAAACT
CAAATTTTATAAAATTAGATATAAAAAATTAAAATCTTTAAAATCCCTAATTTCAATCCTCCATA
TCTTCGTTGGCCTCCAAAACTCCGTTAAAAACTATT
Found at i:125143 original size:19 final size:19
Alignment explanation
Indices: 125127--125173 Score: 76
Period size: 19 Copynumber: 2.5 Consensus size: 19
125117 AGAAGGAACA
125127 CAGGGGAGGGTTGGGAAAT
1 CAGGGGAGGGTTGGGAAAT
*
125146 TAGGGGAGGGTTGGGAAAT
1 CAGGGGAGGGTTGGGAAAT
*
125165 TAGGGGAGG
1 CAGGGGAGG
125174 AAAAGTAACA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 27 1.00
ACGTcount: A:0.26, C:0.02, G:0.55, T:0.17
Consensus pattern (19 bp):
CAGGGGAGGGTTGGGAAAT
Found at i:132694 original size:16 final size:16
Alignment explanation
Indices: 132673--132706 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
132663 ATCTAATGAT
132673 ACTAAAAAAGCGTAAA
1 ACTAAAAAAGCGTAAA
132689 ACTAAAAAAGCGTAAA
1 ACTAAAAAAGCGTAAA
132705 AC
1 AC
132707 AATTACAATT
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.62, C:0.15, G:0.12, T:0.12
Consensus pattern (16 bp):
ACTAAAAAAGCGTAAA
Found at i:137924 original size:11 final size:11
Alignment explanation
Indices: 137908--137932 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
137898 TCCCTTTGGG
137908 CTCTCACTAAA
1 CTCTCACTAAA
137919 CTCTCACTAAA
1 CTCTCACTAAA
137930 CTC
1 CTC
137933 CGTCCCTGAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.32, C:0.40, G:0.00, T:0.28
Consensus pattern (11 bp):
CTCTCACTAAA
Found at i:140729 original size:20 final size:20
Alignment explanation
Indices: 140700--140745 Score: 58
Period size: 20 Copynumber: 2.3 Consensus size: 20
140690 GCACATTTTC
* *
140700 TATTGATTTTGTTTGTAGTA
1 TATTGATTTTATTAGTAGTA
140720 TGATTG-TTTTATTAGTAGTA
1 T-ATTGATTTTATTAGTAGTA
140740 TATTGA
1 TATTGA
140746 AGTCACTTTC
Statistics
Matches: 22, Mismatches: 2, Indels: 4
0.79 0.07 0.14
Matches are distributed among these distances:
19 4 0.18
20 14 0.64
21 4 0.18
ACGTcount: A:0.24, C:0.00, G:0.20, T:0.57
Consensus pattern (20 bp):
TATTGATTTTATTAGTAGTA
Found at i:143056 original size:45 final size:47
Alignment explanation
Indices: 142985--143093 Score: 152
Period size: 45 Copynumber: 2.3 Consensus size: 47
142975 CCGTGCTTTG
142985 TTATTC-AAAAAGAAATCCTAACCGCATGATATCTAATTCGCATGC-
1 TTATTCGAAAAAGAAATCCTAACCGCATGATATCTAATTCGCATGCA
* * *
143030 TTGTTCGAAAAATAAA-CCTAACCGCATGATATCTAGTTCGCATGCA
1 TTATTCGAAAAAGAAATCCTAACCGCATGATATCTAATTCGCATGCA
143076 TTTATTCGAAAAACGAAA
1 -TTATTCGAAAAA-GAAA
143094 ATGAATGACT
Statistics
Matches: 55, Mismatches: 5, Indels: 5
0.85 0.08 0.08
Matches are distributed among these distances:
45 33 0.60
46 8 0.15
47 11 0.20
48 3 0.05
ACGTcount: A:0.39, C:0.20, G:0.13, T:0.28
Consensus pattern (47 bp):
TTATTCGAAAAAGAAATCCTAACCGCATGATATCTAATTCGCATGCA
Found at i:145078 original size:115 final size:115
Alignment explanation
Indices: 144942--145161 Score: 323
Period size: 115 Copynumber: 1.9 Consensus size: 115
144932 TTATTTTAAG
* * * * *
144942 AAAATGTTTTGGTTATTTATTTATTTTTCAATATCAAATAAAAGAGCTGTCTTAAGGTACCTAGA
1 AAAATGTTTTGGATATTTATTTATTTTTCAATATCAAAGAAAAAAGCTGTCTTAAAGCACCTAGA
* * * *
145007 AGCTCTTTTCTGATATTTTTGAATAAATAAATATCTTATTATATTAAAAT
66 AGCCCTTTTATGATATTTCTAAATAAATAAATATCTTATTATATTAAAAT
* * *
145057 AAAATGTTTTTGATATTTATTTATTTTTTAATATCAAAGAAAAAAGTTGTCTTAAAGCACCTAGA
1 AAAATGTTTTGGATATTTATTTATTTTTCAATATCAAAGAAAAAAGCTGTCTTAAAGCACCTAGA
*
145122 AGCCCTTTTATGATATTTCTAAATAAGTAAATATCTTATT
66 AGCCCTTTTATGATATTTCTAAATAAATAAATATCTTATT
145162 TATGTATATT
Statistics
Matches: 92, Mismatches: 13, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
115 92 1.00
ACGTcount: A:0.37, C:0.09, G:0.10, T:0.44
Consensus pattern (115 bp):
AAAATGTTTTGGATATTTATTTATTTTTCAATATCAAAGAAAAAAGCTGTCTTAAAGCACCTAGA
AGCCCTTTTATGATATTTCTAAATAAATAAATATCTTATTATATTAAAAT
Found at i:149761 original size:2 final size:2
Alignment explanation
Indices: 149754--149781 Score: 56
Period size: 2 Copynumber: 14.0 Consensus size: 2
149744 TTATCCTTTA
149754 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT
149782 CCTTTGTTGT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 26 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:159103 original size:54 final size:54
Alignment explanation
Indices: 159017--159182 Score: 262
Period size: 54 Copynumber: 3.1 Consensus size: 54
159007 CAATGATTGA
*
159017 GAACATCTGAGCAGAAA-TCACAGGAAATGATGAATGTGTTGTCAAATGTTTTAC
1 GAACATCTGAGCAGAAACT-ACAGGAAAGGATGAATGTGTTGTCAAATGTTTTAC
159071 GAACATCTGAGCAGAAACTACAGGAAAGGATGAATGTGTTGTCAAATGTTTTAC
1 GAACATCTGAGCAGAAACTACAGGAAAGGATGAATGTGTTGTCAAATGTTTTAC
* * * **
159125 GAACATCTGAGCAGAAGCCACAGGAAAGGATGAATGCGCCGTCAAATGTTTTAC
1 GAACATCTGAGCAGAAACTACAGGAAAGGATGAATGTGTTGTCAAATGTTTTAC
159179 GAAC
1 GAAC
159183 CTGCTATTCT
Statistics
Matches: 105, Mismatches: 6, Indels: 2
0.93 0.05 0.02
Matches are distributed among these distances:
54 104 0.99
55 1 0.01
ACGTcount: A:0.37, C:0.16, G:0.24, T:0.23
Consensus pattern (54 bp):
GAACATCTGAGCAGAAACTACAGGAAAGGATGAATGTGTTGTCAAATGTTTTAC
Found at i:159570 original size:22 final size:22
Alignment explanation
Indices: 159542--159618 Score: 109
Period size: 22 Copynumber: 3.5 Consensus size: 22
159532 ATCTATATTC
*
159542 TTCAAAGATGATAGATTCTCTA
1 TTCAAAGATGATAGATTCTCTT
*
159564 TTCAAAGATGATAGATTCCCTT
1 TTCAAAGATGATAGATTCTCTT
* *
159586 TTTAAAGATGACAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
*
159608 TTCAAATATGA
1 TTCAAAGATGA
159619 AAGCTTTATC
Statistics
Matches: 48, Mismatches: 7, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
22 48 1.00
ACGTcount: A:0.35, C:0.14, G:0.13, T:0.38
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCTCTT
Found at i:160233 original size:113 final size:114
Alignment explanation
Indices: 160057--160713 Score: 776
Period size: 113 Copynumber: 5.6 Consensus size: 114
160047 TGCCAGGTCG
**
160057 AGTTCATAATGAGAAGAACTCATCTGAAGAATAAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
*
160122 AA-CTTTTCGCTTGAATTCATTATTCGATGGATCAACTTTTCCAGAGAA
66 AACCTTTTCGCTTGAATTCATCATTCGATGGATCAACTTTTCCAGAGAA
160170 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
*
160235 AA-CTTTTCGCTTGAATTCATCATTCGATGGATCAACTTTTCCAAAGAA
66 AACCTTTTCGCTTGAATTCATCATTCGATGGATCAACTTTTCCAGAGAA
*
160283 AGTTCATAATGAGAAAAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
* * *
160348 AACCTTTT-GCTTGAATTCATCATTCGATGGATCAACATTGCCAG-GTAG
66 AACCTTTTCGCTTGAATTCATCATTCGATGGATCAACTTTTCCAGAG-AA
* * *
160396 AGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCATAATAAGAAGAACTTGTTA
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
* * * ** * *
160461 AACCTTTT-GCTCG-ACTCTATCCCAGAAGGAGATAAATCAGCATCAACATTTCCAGAGAA
66 AACCTTTTCGCTTGAATTC-AT--C------A-TTCGAT--GGATCAACTTTTCCAGAGAA
*
160520 AGTTCATAATGAGAAGAACTCATCTGAAG-AGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTC
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
* * * * * *
160584 AACCTTTT-GCTCG-ACTCTATCGTAGAAGGAGATAGATCTGCATCAA-TTTTTCAGAGAA
66 AACCTTTTCGCTTGAATTC-ATC--------A-TTCGA--TGGATCAACTTTTCCAGAGAA
* *
160642 AGTTCATAATGAGAAGAACTCATCTAAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTC
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
160707 AACCTTT
66 AACCTTT
160714 GTTTGATTCT
Statistics
Matches: 495, Mismatches: 29, Indels: 30
0.89 0.05 0.05
Matches are distributed among these distances:
112 4 0.01
113 284 0.57
114 5 0.01
115 1 0.00
121 2 0.00
122 41 0.08
123 112 0.23
124 44 0.09
125 2 0.00
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (114 bp):
AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
AACCTTTTCGCTTGAATTCATCATTCGATGGATCAACTTTTCCAGAGAA
Found at i:160420 original size:226 final size:229
Alignment explanation
Indices: 160057--160801 Score: 799
Period size: 226 Copynumber: 3.2 Consensus size: 229
160047 TGCCAGGTCG
**
160057 AGTTCATAATGAGAAGAACTCATCTGAAGAATAAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
* *
160122 AA-CTTTTCGCTTGAATTCATTATTCGATGGATCAACTTTTCCAGAGAAAGTTCATAATGAGAAG
66 AACCTTTT-GCTTGAATTCATCATTCGATGGATCAACATTTCCAGAGAAAGTTCATAATGAGAAG
* *
160186 AACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTCGCTTGAAT
130 AACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTT-GCTCGACT
* ** * *
160251 -TCAT-C-A-TTCGAT-GGATCAACTTTTCCAAAGAA
194 CT-ATCCAAGATAAATAGCATCAACATTTCCAAAGAA
*
160283 AGTTCATAATGAGAAAAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
* *
160348 AACCTTTTGCTTGAATTCATCATTCGATGGATCAACATTGCCAG-GTAGAGTTCATAATGAGAAG
66 AACCTTTTGCTTGAATTCATCATTCGATGGATCAACATTTCCAGAG-AAAGTTCATAATGAGAAG
* * *
160412 AACTCATCTGAAGAAAGAAGAAGAAGTTCATAATAAGAAGAACTTGTTAAACCTTTTGCTCGACT
130 AACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAA-CTTTTGCTCGACT
*
160477 CTATCCCAGAAGGAGATAAATCAGCATCAACATTTCCAGAGAA
194 CTAT-CC---A--AGATAAAT-AGCATCAACATTTCCAAAGAA
*
160520 AGTTCATAATGAGAAGAACTCATCTGAAG-AGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTC
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
* * *** * * *
160584 AACCTTTTGCTCG-ACTCTATCGTAGAAGGAGATAGATCTGCATCAATTTTTCAGAGAAAGTTCA
66 AACCTTTTGCTTGAATTC-ATC-----ATTCGATGGA--T-CAAC-A-TTTCCAGAGAAAGTTCA
* * *
160648 TAATGAGAAGAACTCATCTAAAGAAGGAAGAAGAAGTTCATAATGAGAAGAGCTTGTTCAACCTT
120 TAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTT
* * * * * **
160713 TGTTTGATTCTATCACAGAATGAGATAGATCAGTATCAGTATTTCCATAA-AA
185 TGCTCGACTCTATC-C---A--AGATAAAT-AGCATCAACATTTCCA-AAGAA
*
160765 AGTTCATAATAAGAAGAACTCATCTGAAGAAGGAAGA
1 AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGA
160802 GAATTTGTTC
Statistics
Matches: 443, Mismatches: 46, Indels: 40
0.84 0.09 0.08
Matches are distributed among these distances:
225 1 0.00
226 170 0.38
227 11 0.02
228 1 0.00
234 1 0.00
235 6 0.01
236 49 0.11
237 45 0.10
241 6 0.01
243 1 0.00
244 4 0.01
245 71 0.16
246 76 0.17
247 1 0.00
ACGTcount: A:0.39, C:0.15, G:0.19, T:0.27
Consensus pattern (229 bp):
AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTC
AACCTTTTGCTTGAATTCATCATTCGATGGATCAACATTTCCAGAGAAAGTTCATAATGAGAAGA
ACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTGCTCGACTCT
ATCCAAGATAAATAGCATCAACATTTCCAAAGAA
Found at i:160598 original size:123 final size:124
Alignment explanation
Indices: 160378--160801 Score: 595
Period size: 123 Copynumber: 3.4 Consensus size: 124
160368 CATTCGATGG
* * *
160378 ATCAACATTGCCAG-GTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAAGAAGAAGAAGTTCA
1 ATCAACATTTCCAGAG-AAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCA
* * * * *
160442 TAATAAGAAGAACTTGTTAAACCTTTTGCTCGACTCTATCCCAGAAGGAGATAAATCAGC
65 TAATGAGAAGAGCTTGTTCAACCTTTTGCTCGACTCTATCACAGAAGGAGATAGATCAGC
160502 ATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAG-AGGAAGAAGAAGTTCAT
1 ATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCAT
** *
160566 AATGAGAAGAGCTTGTTCAACCTTTTGCTCGACTCTATCGTAGAAGGAGATAGATCTGC
66 AATGAGAAGAGCTTGTTCAACCTTTTGCTCGACTCTATCACAGAAGGAGATAGATCAGC
* * *
160625 ATCAA-TTTTTCAGAGAAAGTTCATAATGAGAAGAACTCATCTAAAGAAGGAAGAAGAAGTTCAT
1 ATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCAT
* * * * *
160689 AATGAGAAGAGCTTGTTCAACC-TTTGTTTGATTCTATCACAGAATGAGATAGATCAGT
66 AATGAGAAGAGCTTGTTCAACCTTTTGCTCGACTCTATCACAGAAGGAGATAGATCAGC
** * * *
160747 ATCAGTATTTCCATAAAAAGTTCATAATAAGAAGAACTCATCTGAAGAAGGAAGA
1 ATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGA
160802 GAATTTGTTC
Statistics
Matches: 269, Mismatches: 28, Indels: 7
0.88 0.09 0.02
Matches are distributed among these distances:
122 70 0.26
123 155 0.58
124 43 0.16
125 1 0.00
ACGTcount: A:0.40, C:0.15, G:0.20, T:0.25
Consensus pattern (124 bp):
ATCAACATTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCAT
AATGAGAAGAGCTTGTTCAACCTTTTGCTCGACTCTATCACAGAAGGAGATAGATCAGC
Found at i:162745 original size:115 final size:113
Alignment explanation
Indices: 162542--162759 Score: 310
Period size: 115 Copynumber: 1.9 Consensus size: 113
162532 TTATTTTAAG
* * * *
162542 AAAATGTTTTGGTTATTTATTATTTTCAATATCAAATAAAAGAGCTGTCTTAAGGTACCTAGAAG
1 AAAATGTTTTGGATATTTATTATTTTCAATATCAAAGAAAAGAGCTGTCTTAAAGCACCTAGAAG
* * * *
162607 CTCTTTTCTGATATTTTTGAATAAATAAATATCTTATTATATTAAAAT
66 CCCTTTTATGATATTTCTAAATAAATAAATATCTTATTATATTAAAAT
* * *
162655 AAAATGTTTTTGATATTTATTTATTTTTTAATATCAAAGAAAAGAGTTGTCTTAAAGCACCTAGA
1 AAAATGTTTTGGATATTTA-TTA-TTTTCAATATCAAAGAAAAGAGCTGTCTTAAAGCACCTAGA
*
162720 AGCCCTTTTATGATATTTCTAAATAAGTAAATATCTTATT
64 AGCCCTTTTATGATATTTCTAAATAAATAAATATCTTATT
162760 TATGTATATT
Statistics
Matches: 91, Mismatches: 12, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
113 17 0.19
114 3 0.03
115 71 0.78
ACGTcount: A:0.37, C:0.09, G:0.11, T:0.43
Consensus pattern (113 bp):
AAAATGTTTTGGATATTTATTATTTTCAATATCAAAGAAAAGAGCTGTCTTAAAGCACCTAGAAG
CCCTTTTATGATATTTCTAAATAAATAAATATCTTATTATATTAAAAT
Found at i:162790 original size:115 final size:111
Alignment explanation
Indices: 162554--162791 Score: 269
Period size: 115 Copynumber: 2.1 Consensus size: 111
162544 AATGTTTTGG
* * *
162554 TTATTTATTATTTTCAATATCAAATAAAAGAGCTGTCTTAAGGTACCTAGAAGCTCTTTTCTGAT
1 TTATTTATT-TTTT-AATATCAAAGAAAAGAGCTGTCTTAAGGCACCTAGAAGCCCTTTTCTGAT
* * * * *
162619 ATTTTTGAATAAATAAATATCTTATTATATTAAAATAAAATGTTTTTGATAT
64 A-TTTTAAATAAATAAATATCTTATT-TATTAAATTAATAT-TTTTT-AAAA
* * *
162671 TTATTTATTTTTTAATATCAAAGAAAAGAGTTGTCTTAAAGCACCTAGAAGCCCTTTTATGATAT
1 TTATTTATTTTTTAATATCAAAGAAAAGAGCTGTCTTAAGGCACCTAGAAGCCCTTTTCTGATAT
* *
162736 TTCTAAATAAGTAAATATCTTATTTATGTATATTAATATATTTCTTAAAA
66 TT-TAAATAAATAAATATCTTATTTAT-TAAATTAATAT-TTT-TTAAAA
162786 TTATTT
1 TTATTT
162792 GAAATAATAG
Statistics
Matches: 104, Mismatches: 14, Indels: 8
0.83 0.11 0.06
Matches are distributed among these distances:
114 6 0.06
115 83 0.80
116 6 0.06
117 9 0.09
ACGTcount: A:0.37, C:0.09, G:0.09, T:0.45
Consensus pattern (111 bp):
TTATTTATTTTTTAATATCAAAGAAAAGAGCTGTCTTAAGGCACCTAGAAGCCCTTTTCTGATAT
TTTAAATAAATAAATATCTTATTTATTAAATTAATATTTTTTAAAA
Found at i:168238 original size:24 final size:24
Alignment explanation
Indices: 168185--168238 Score: 99
Period size: 24 Copynumber: 2.2 Consensus size: 24
168175 AATAACCCAT
*
168185 AAATTATAATAAAAGACTAAAATG
1 AAATTTTAATAAAAGACTAAAATG
168209 AAATTTTAATAAAAGACTAAAATG
1 AAATTTTAATAAAAGACTAAAATG
168233 AAATTT
1 AAATTT
168239 CACAGAGACG
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.59, C:0.04, G:0.07, T:0.30
Consensus pattern (24 bp):
AAATTTTAATAAAAGACTAAAATG
Found at i:170352 original size:40 final size:40
Alignment explanation
Indices: 170302--170419 Score: 155
Period size: 40 Copynumber: 3.0 Consensus size: 40
170292 TTGTTATCTA
*
170302 GGGGTAACACGGCTCCTGCGCGATGAGGAGATCTGGTCGG
1 GGGGTGACACGGCTCCTGCGCGATGAGGAGATCTGGTCGG
*
170342 GGGGTGACACGGCTCCTGCGCGATGAGGAGAACTGGTCGG
1 GGGGTGACACGGCTCCTGCGCGATGAGGAGATCTGGTCGG
* * * * * * *
170382 GGGATGACACGACTCATACGTGATGAAGAGTTCTGGTC
1 GGGGTGACACGGCTCCTGCGCGATGAGGAGATCTGGTC
170420 ATCTTTAGGA
Statistics
Matches: 68, Mismatches: 10, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
40 68 1.00
ACGTcount: A:0.20, C:0.21, G:0.40, T:0.19
Consensus pattern (40 bp):
GGGGTGACACGGCTCCTGCGCGATGAGGAGATCTGGTCGG
Found at i:170424 original size:174 final size:174
Alignment explanation
Indices: 170173--170535 Score: 478
Period size: 174 Copynumber: 2.1 Consensus size: 174
170163 GTCTAAGGGC
170173 GACACGGTTCCTACGAGATGAGGAAATCTGGTCAGGGGATGACACGACTCATACATGATGAAGAG
1 GACACGGTTCCTACGAGATGAGGAAATCTGGTCAGGGGATGACACGACTCATACATGATGAAGAG
* * * ** * * *
170238 TTTTGGTCATCTTTTGGAATGGTGATAACTC-AGTTCCTATGCGATGTGGACGACTTGTTATCTA
66 TTCTGGTCATCTTTAGGAAGGGCAATAACTCGA-TTCCTACGCGATGAGGACGACTGGTTATCTA
* * * *
170302 GGGGTAACACGGCTCCTGCGCGATGAGGAGATCTGGTCGGGGGGT
130 GGGGTAACACGGCTCCTACGCGATGAGGAGATCTGATCAGGGGAT
* * * * *
170347 GACACGGCTCCTGCGCGATGAGGAGAA-CTGGTCGGGGGATGACACGACTCATACGTGATGAAGA
1 GACACGGTTCCTACGAGATGAGGA-AATCTGGTCAGGGGATGACACGACTCATACATGATGAAGA
* *
170411 GTTCTGGTCATCTTTAGGAAGGGCAATGACTCGATTCCTACGCGATGAGGACGGCTGGTTATCTA
65 GTTCTGGTCATCTTTAGGAAGGGCAATAACTCGATTCCTACGCGATGAGGACGACTGGTTATCTA
* * * * *
170476 GGGGTGACACGTCTCCTACGTGATGAGGAGGTTTGATCAGGGGAT
130 GGGGTAACACGGCTCCTACGCGATGAGGAGATCTGATCAGGGGAT
170521 GACACGGTTCCTACG
1 GACACGGTTCCTACG
170536 TTGTGAGGAC
Statistics
Matches: 161, Mismatches: 26, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
174 158 0.98
175 3 0.02
ACGTcount: A:0.23, C:0.19, G:0.33, T:0.25
Consensus pattern (174 bp):
GACACGGTTCCTACGAGATGAGGAAATCTGGTCAGGGGATGACACGACTCATACATGATGAAGAG
TTCTGGTCATCTTTAGGAAGGGCAATAACTCGATTCCTACGCGATGAGGACGACTGGTTATCTAG
GGGTAACACGGCTCCTACGCGATGAGGAGATCTGATCAGGGGAT
Found at i:170610 original size:28 final size:28
Alignment explanation
Indices: 170570--170666 Score: 90
Period size: 28 Copynumber: 3.4 Consensus size: 28
170560 AGTGATTATG
** *
170570 GTTTCAAGGGAAACCGACTCAAAGATTT
1 GTTTCAAAAGAAACAGACTCAAAGATTT
170598 GTTTCAAAAGAAACAGACTCAATA-ATTT
1 GTTTCAAAAGAAACAGACTCAA-AGATTT
* *
170626 GTCTCAAGAA-AAACAAACTCAAAGATGATGT
1 GTTTCAA-AAGAAACAGACTCAAAGAT--T-T
170657 GTTTCAAAAG
1 GTTTCAAAAG
170667 CAACTGTCTC
Statistics
Matches: 56, Mismatches: 6, Indels: 11
0.77 0.08 0.15
Matches are distributed among these distances:
27 1 0.02
28 42 0.75
29 3 0.05
30 3 0.05
31 7 0.12
ACGTcount: A:0.43, C:0.15, G:0.16, T:0.25
Consensus pattern (28 bp):
GTTTCAAAAGAAACAGACTCAAAGATTT
Found at i:170750 original size:63 final size:66
Alignment explanation
Indices: 170642--170791 Score: 173
Period size: 63 Copynumber: 2.3 Consensus size: 66
170632 AGAAAAACAA
* *
170642 ACTCAAAGATGATGTGTTTCAAAAGCAACTGTCTCAAAAGAGACAAAATTTGT-TTCAAGGGAAA
1 ACTCAAAGATGA-GTGTTTCAAAAGAAAATGTCTCAAAAGAGACAAAATTTGTGTTCAAGGGAAA
170706 GG
65 GG
* ** *
170708 ACTCAAAGATGA-TGTTT-AAAGGAAAATGTCTCAAGCGAGACAAAATTTGTGTTTAAGGGAAAC
1 ACTCAAAGATGAGTGTTTCAAAAGAAAATGTCTCAAAAGAGACAAAATTTGTGTTCAAGGGAAA-
*
170771 GT
65 GG
*
170773 TCTCAAAGAT-AGGTGTTTC
1 ACTCAAAGATGA-GTGTTTC
170792 GAGAAAAACA
Statistics
Matches: 71, Mismatches: 8, Indels: 9
0.81 0.09 0.10
Matches are distributed among these distances:
63 28 0.39
64 16 0.23
65 10 0.14
66 17 0.24
ACGTcount: A:0.39, C:0.13, G:0.22, T:0.27
Consensus pattern (66 bp):
ACTCAAAGATGAGTGTTTCAAAAGAAAATGTCTCAAAAGAGACAAAATTTGTGTTCAAGGGAAAG
G
Found at i:170829 original size:32 final size:33
Alignment explanation
Indices: 170786--170855 Score: 106
Period size: 32 Copynumber: 2.2 Consensus size: 33
170776 CAAAGATAGG
*
170786 TGTTTCGAGAAAAACAAACTCAAAGATGTT-TT
1 TGTTTCAAGAAAAACAAACTCAAAGATGTTGTT
* *
170818 TGTTTCAAGAAAAACATACTCAAAGATTTTGTT
1 TGTTTCAAGAAAAACAAACTCAAAGATGTTGTT
170851 TGTTT
1 TGTTT
170856 TGTTTCATGG
Statistics
Matches: 34, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
32 27 0.79
33 7 0.21
ACGTcount: A:0.37, C:0.11, G:0.14, T:0.37
Consensus pattern (33 bp):
TGTTTCAAGAAAAACAAACTCAAAGATGTTGTT
Found at i:171430 original size:65 final size:64
Alignment explanation
Indices: 171220--171442 Score: 180
Period size: 65 Copynumber: 3.4 Consensus size: 64
171210 GAAAGTTTTA
* * * * * * *
171220 TTTCAAGAGAAGCAAACTCAAAGATTTTGTATTTCTAGAGAAACTGCCTCAAGGGAGACAAAAT-
1 TTTCAAAAGAAACAAACTCAAAGATTTT-T-TCTCAAAAGAAATTGTCTCAA--GAGACAAAATC
171284 TTG
62 TTG
* * * * * * *
171287 TTTTAATAGAAACGATCTCAAAGGTGGGTATTT-TCAAAAGAAATTGTCTCGAGAGACAAAATCT
1 TTTCAAAAGAAACAAACTCAAAGAT---TTTTTCTCAAAAGAAATTGTCTCAAGAGACAAAATCT
171351 TG
63 TG
* * * *
171353 TTTCAAAGGAAACAAACTCAAAGATTTTTTCTCAAAAGAAATTGTCTTTAAGAGATAAAATTTTG
1 TTTCAAAAGAAACAAACTCAAAGATTTTTTCTCAAAAGAAATTGTC-TCAAGAGACAAAATCTTG
* *
171418 TTTTAAAAGAAACAGACTCAAAGAT
1 TTTCAAAAGAAACAAACTCAAAGAT
171443 AGATTACATC
Statistics
Matches: 124, Mismatches: 26, Indels: 14
0.76 0.16 0.09
Matches are distributed among these distances:
63 4 0.03
64 15 0.12
65 46 0.37
66 22 0.18
67 33 0.27
68 1 0.01
69 1 0.01
70 2 0.02
ACGTcount: A:0.41, C:0.13, G:0.17, T:0.30
Consensus pattern (64 bp):
TTTCAAAAGAAACAAACTCAAAGATTTTTTCTCAAAAGAAATTGTCTCAAGAGACAAAATCTTG
Found at i:173346 original size:19 final size:18
Alignment explanation
Indices: 173322--173367 Score: 58
Period size: 18 Copynumber: 2.5 Consensus size: 18
173312 TTGTCATCTT
173322 TTTGTTCTTTGCTCTTTTC
1 TTTGTT-TTTGCTCTTTTC
*
173341 TTTGTTTTTGCT-TTTTT
1 TTTGTTTTTGCTCTTTTC
173358 TTTGCTTTTT
1 TTTG-TTTTT
173368 TTCTCTTTGT
Statistics
Matches: 25, Mismatches: 1, Indels: 3
0.86 0.03 0.10
Matches are distributed among these distances:
17 8 0.32
18 11 0.44
19 6 0.24
ACGTcount: A:0.00, C:0.13, G:0.11, T:0.76
Consensus pattern (18 bp):
TTTGTTTTTGCTCTTTTC
Found at i:173350 original size:18 final size:17
Alignment explanation
Indices: 173322--173381 Score: 61
Period size: 15 Copynumber: 3.5 Consensus size: 17
173312 TTGTCATCTT
173322 TTTGTTCTTTGCTCTTTTC
1 TTTGTT-TTTGCT-TTTTC
*
173341 TTTGTTTTTGCTTTTTT
1 TTTGTTTTTGCTTTTTC
* *
173358 TTTGCTTTT--TTTCTC
1 TTTGTTTTTGCTTTTTC
173373 TTTGTTTTT
1 TTTGTTTTT
173382 CTGTTCTCTT
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
15 12 0.33
17 12 0.33
18 6 0.17
19 6 0.17
ACGTcount: A:0.00, C:0.13, G:0.10, T:0.77
Consensus pattern (17 bp):
TTTGTTTTTGCTTTTTC
Found at i:173359 original size:11 final size:11
Alignment explanation
Indices: 173336--173369 Score: 52
Period size: 11 Copynumber: 3.2 Consensus size: 11
173326 TTCTTTGCTC
*
173336 TTTT-CTTTGT
1 TTTTGCTTTTT
173346 TTTTGCTTTTT
1 TTTTGCTTTTT
173357 TTTTGCTTTTT
1 TTTTGCTTTTT
173368 TT
1 TT
173370 CTCTTTGTTT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
10 4 0.18
11 18 0.82
ACGTcount: A:0.00, C:0.09, G:0.09, T:0.82
Consensus pattern (11 bp):
TTTTGCTTTTT
Found at i:174684 original size:13 final size:14
Alignment explanation
Indices: 174666--174696 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
174656 TTAAAAATTG
174666 AAATGCAAATATA-
1 AAATGCAAATATAC
174679 AAATGCAAATATAC
1 AAATGCAAATATAC
174693 AAAT
1 AAAT
174697 CCAGATGCAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 13 0.76
14 4 0.24
ACGTcount: A:0.61, C:0.10, G:0.06, T:0.23
Consensus pattern (14 bp):
AAATGCAAATATAC
Found at i:177014 original size:60 final size:60
Alignment explanation
Indices: 176904--177030 Score: 157
Period size: 60 Copynumber: 2.1 Consensus size: 60
176894 AAAGATGGTC
* * * * * *
176904 ATAGTTTAGGGATGAAATTAGAATGTTTAAAAGTTTAAGAATTAATTTAAAATAAAAATA
1 ATAGTTTAGAGATGAAACTAAAATATTTAAAAGTTTAAGAATCAACTTAAAATAAAAATA
* * *
176964 ATAGTTTAGAGATGAAACTAAAATATTTAAAAGTTTAAGGAA-CAACTTAAAATGAAAGTT
1 ATAGTTTAGAGATGAAACTAAAATATTTAAAAGTTTAA-GAATCAACTTAAAATAAAAATA
177024 ATAGTTT
1 ATAGTTT
177031 GAGTTCATAT
Statistics
Matches: 57, Mismatches: 9, Indels: 2
0.84 0.13 0.03
Matches are distributed among these distances:
60 54 0.95
61 3 0.05
ACGTcount: A:0.49, C:0.02, G:0.15, T:0.34
Consensus pattern (60 bp):
ATAGTTTAGAGATGAAACTAAAATATTTAAAAGTTTAAGAATCAACTTAAAATAAAAATA
Found at i:178673 original size:36 final size:36
Alignment explanation
Indices: 178602--178674 Score: 96
Period size: 36 Copynumber: 2.0 Consensus size: 36
178592 GTTGGAAAAT
* *
178602 ATTTATATATTTTCTTTAAAAATTTAAATTCATAAA
1 ATTTATATATTTTCTTTAAAAATTGAAAATCATAAA
178638 ATTTATATAATTTT-TTTACAAAATTGAAAAT-ATAAA
1 ATTTATAT-ATTTTCTTTA-AAAATTGAAAATCATAAA
178674 A
1 A
178675 AGGTTTAATG
Statistics
Matches: 33, Mismatches: 2, Indels: 4
0.85 0.05 0.10
Matches are distributed among these distances:
36 18 0.55
37 15 0.45
ACGTcount: A:0.48, C:0.04, G:0.01, T:0.47
Consensus pattern (36 bp):
ATTTATATATTTTCTTTAAAAATTGAAAATCATAAA
Found at i:179816 original size:60 final size:61
Alignment explanation
Indices: 179749--179864 Score: 148
Period size: 62 Copynumber: 1.9 Consensus size: 61
179739 TCTATGACTA
* ** *
179749 TCATTCTAGATTAGTCTTC-AAAC-TTTTGAATATT-TCAATTTTATCCCCAAACTATGGCAT
1 TCATTCTAAATTAGTCCCCTAAACTTTTTGAACATTCT-AATTTTAT-CCCAAACTATGGCAT
*
179809 TCATTCTAAATTAGTCCCCTAAACTTTTTGAACATTCTAATTTTATCTCAAACTAT
1 TCATTCTAAATTAGTCCCCTAAACTTTTTGAACATTCTAATTTTATCCCAAACTAT
179865 ATGTATATAT
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
60 16 0.33
61 13 0.27
62 18 0.38
63 1 0.02
ACGTcount: A:0.31, C:0.21, G:0.06, T:0.42
Consensus pattern (61 bp):
TCATTCTAAATTAGTCCCCTAAACTTTTTGAACATTCTAATTTTATCCCAAACTATGGCAT
Found at i:179864 original size:61 final size:60
Alignment explanation
Indices: 179749--179864 Score: 146
Period size: 60 Copynumber: 1.9 Consensus size: 60
179739 TCTATGACTA
* ** *
179749 TCATTCTAGATTAGTCTTCAAACTTTTGAATATTTCAATTTTATCCCCAAACTATGGCAT
1 TCATTCTAAATTAGTCCCCAAACTTTTGAACATTTCAATTTTATCCCCAAACTATGGCAT
*
179809 TCATTCTAAATTAGTCCCCTAAACTTTTTGAACA-TTCTAATTTTAT-CTCAAACTAT
1 TCATTCTAAATTAGTCCCC-AAAC-TTTTGAACATTTC-AATTTTATCCCCAAACTAT
179865 ATGTATATAT
Statistics
Matches: 48, Mismatches: 5, Indels: 5
0.83 0.09 0.09
Matches are distributed among these distances:
60 16 0.33
61 16 0.33
62 16 0.33
ACGTcount: A:0.31, C:0.21, G:0.06, T:0.42
Consensus pattern (60 bp):
TCATTCTAAATTAGTCCCCAAACTTTTGAACATTTCAATTTTATCCCCAAACTATGGCAT
Found at i:180087 original size:60 final size:59
Alignment explanation
Indices: 179987--180134 Score: 163
Period size: 59 Copynumber: 2.5 Consensus size: 59
179977 ATGAATTTGA
* * * * ** *
179987 GATGTAATTGAAATATTTAAAAGTTTGAGGACCAATTTAGAA-AGATGGTCATAATTTAGG
1 GATGAAATTAAAATATTTAAAAGTTTAAGAACCAATTTAGAATA-A-AATAATAATTTAGG
* * * * *
180047 GATGAAATTATAATGTTTAAAGGTTTAAGAACTAATTTAGAATAAAATAATAGTTTAGG
1 GATGAAATTAAAATATTTAAAAGTTTAAGAACCAATTTAGAATAAAATAATAATTTAGG
180106 GATGAAATTAAAATATTTAAAAGTTTAAG
1 GATGAAATTAAAATATTTAAAAGTTTAAG
180135 GAGCAACTTA
Statistics
Matches: 72, Mismatches: 15, Indels: 3
0.80 0.17 0.03
Matches are distributed among these distances:
59 36 0.50
60 35 0.49
61 1 0.01
ACGTcount: A:0.45, C:0.03, G:0.18, T:0.34
Consensus pattern (59 bp):
GATGAAATTAAAATATTTAAAAGTTTAAGAACCAATTTAGAATAAAATAATAATTTAGG
Found at i:180758 original size:22 final size:23
Alignment explanation
Indices: 180722--180771 Score: 68
Period size: 22 Copynumber: 2.3 Consensus size: 23
180712 GTTCAACCTA
*
180722 ATTTTTTTTATTTTTTATTAAAT
1 ATTTTTGTTATTTTTTATTAAAT
*
180745 ATTTTTGTTA-TTTTTATTTAAT
1 ATTTTTGTTATTTTTTATTAAAT
180767 -TTTTT
1 ATTTTT
180772 AAATAATTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
21 5 0.20
22 11 0.44
23 9 0.36
ACGTcount: A:0.22, C:0.00, G:0.02, T:0.76
Consensus pattern (23 bp):
ATTTTTGTTATTTTTTATTAAAT
Found at i:181104 original size:75 final size:75
Alignment explanation
Indices: 181008--181213 Score: 231
Period size: 73 Copynumber: 2.8 Consensus size: 75
180998 ACTTTTTTAT
* **
181008 ATGGTAACTTATATCCGAATAAATCTTTTAACTTTTAATTTATAATTATCAATATTTATCCAAAT
1 ATGGTAACTTGTATCTAAATAAATCTTTTAACTTTTAATTTATAATTATCAATATTTATCCAAAT
181073 AAA-TTATAG
66 AAATTTATAG
* * * * *
181082 ATGGGTAACTTGTATCTAAATAAATC--TAAAATTTTAGTTTATAAATGTCAATATTTATCCAAA
1 AT-GGTAACTTGTATCTAAATAAATCTTTTAACTTTTAATTTATAATTATCAATATTTATCCAAA
* *
181145 TAAATTTTTAT
65 TAAATTTATAG
* * * **
181156 ATGGTAACTCGTATCTAAATAAAT-TTATTAACCTTTAATTTATAGTTATTGATATTTA
1 ATGGTAACTTGTATCTAAATAAATCTT-TTAACTTTTAATTTATAATTATCAATATTTA
181214 AGTTAAAAAT
Statistics
Matches: 107, Mismatches: 20, Indels: 9
0.79 0.15 0.07
Matches are distributed among these distances:
73 57 0.53
74 8 0.07
75 42 0.39
ACGTcount: A:0.39, C:0.09, G:0.07, T:0.44
Consensus pattern (75 bp):
ATGGTAACTTGTATCTAAATAAATCTTTTAACTTTTAATTTATAATTATCAATATTTATCCAAAT
AAATTTATAG
Done.