Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001836.1 Hibiscus syriacus cultivar Beakdansim tig00003715_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2428596
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 11 of 12
Found at i:2223792 original size:31 final size:31
Alignment explanation
Indices: 2223754--2223816 Score: 92
Period size: 31 Copynumber: 2.0 Consensus size: 31
2223744 AGGGTCGAGG
*
2223754 GTTTACCTATGTTCTTC-GGAACATATGGACT
1 GTTTACCTAGGTTCTTCGGGAAC-TATGGACT
*
2223785 GTTTACCTAGGTTCTTCGGGATCTATGGACT
1 GTTTACCTAGGTTCTTCGGGAACTATGGACT
2223816 G
1 G
2223817 GTCCTTCGGG
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
31 25 0.86
32 4 0.14
ACGTcount: A:0.19, C:0.19, G:0.24, T:0.38
Consensus pattern (31 bp):
GTTTACCTAGGTTCTTCGGGAACTATGGACT
Found at i:2225212 original size:17 final size:17
Alignment explanation
Indices: 2225182--2225214 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
2225172 AATTTTCTAT
2225182 TATTTTTTGTAAAAGTA
1 TATTTTTTGTAAAAGTA
2225199 TATTGTTTTG-AAAAGT
1 TATT-TTTTGTAAAAGT
2225215 CAATGTGACA
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 10 0.67
18 5 0.33
ACGTcount: A:0.33, C:0.00, G:0.15, T:0.52
Consensus pattern (17 bp):
TATTTTTTGTAAAAGTA
Found at i:2225959 original size:2 final size:2
Alignment explanation
Indices: 2225952--2225984 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
2225942 TTATTTTCTA
2225952 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
2225985 GAACCAAACT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:2229961 original size:31 final size:31
Alignment explanation
Indices: 2229925--2229983 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
2229915 AACTTAAAAG
* *
2229925 AGTTTTGCAATACTGAGATTTAAATAATTTT
1 AGTTTTACAATACTGAAATTTAAATAATTTT
2229956 AGTTTTACAATACTGAAATTTAAATAAT
1 AGTTTTACAATACTGAAATTTAAATAAT
2229984 CCATACAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.41, C:0.07, G:0.10, T:0.42
Consensus pattern (31 bp):
AGTTTTACAATACTGAAATTTAAATAATTTT
Found at i:2230063 original size:54 final size:54
Alignment explanation
Indices: 2229998--2230328 Score: 398
Period size: 54 Copynumber: 6.0 Consensus size: 54
2229988 ACAACTATAA
*
2229998 TAATAAATTATTTAAAATAAATTAATCTATATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCTATATTTTAAAATAAATCAATCCATAC
* * **
2230052 TAATAAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCCATA-
1 TAATAAATTATTTAAAATAAATCAAT-C-TA-TATTTTAA-AATAAATCAATCCATAC
** ** * ** * * *
2230109 TTTTAAATTAAAT-CAATCCATACAA-ATAAATTATTTAAAATAAATCAATTCATAC
1 TAATAAATTATTTAAAATAAAT-CAATCTATA-T-TTTAAAATAAATCAATCCATAC
*
2230164 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCTATATTTTAAAATAAATCAATCCATAC
*
2230218 TAATAAATTATTTAAAATAAATCAATCAATATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCTATATTTTAAAATAAATCAATCCATAC
* *
2230272 TAATAAATTATTTAAAATAAATTAATCCATATTTTAAAATAAATCAATCCATTAC
1 TAATAAATTATTTAAAATAAATCAATCTATATTTTAAAATAAATCAATCCA-TAC
2230327 TA
1 TA
2230329 TACTTTACCC
Statistics
Matches: 235, Mismatches: 31, Indels: 21
0.82 0.11 0.07
Matches are distributed among these distances:
53 2 0.01
54 165 0.70
55 22 0.09
56 14 0.06
57 16 0.07
58 16 0.07
ACGTcount: A:0.52, C:0.12, G:0.00, T:0.36
Consensus pattern (54 bp):
TAATAAATTATTTAAAATAAATCAATCTATATTTTAAAATAAATCAATCCATAC
Found at i:2230068 original size:32 final size:32
Alignment explanation
Indices: 2230030--2230302 Score: 233
Period size: 32 Copynumber: 9.7 Consensus size: 32
2230020 TAATCTATAT
2230030 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
2230062 TTTAAAATAAATCAATCCATAC-AACTACA--A
1 TTTAAAATAAATCAATCCATACTAA-TAAATTA
2230092 --T--AATAAATCAATCC--A-T-AT------
1 TTTAAAATAAATCAATCCATACTAATAAATTA
* *
2230110 TTTAAATTAAATCAATCCATACAAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
2230142 TTTAAAATAAATCAATTCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
2230174 TTTAAAATAAATCAAT-C---C--AT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
2230196 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
2230228 TTTAAAATAAATC-A---AT-C-AAT--A-T-
1 TTTAAAATAAATCAATCCATACTAATAAATTA
2230250 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATACTAATAAATTA
*
2230282 TTTAAAATAAATTAATCCATA
1 TTTAAAATAAATCAATCCATA
2230303 TTTTAAAATA
Statistics
Matches: 198, Mismatches: 7, Indels: 72
0.71 0.03 0.26
Matches are distributed among these distances:
20 1 0.01
22 42 0.21
23 5 0.03
24 4 0.02
26 23 0.12
27 2 0.01
28 9 0.05
30 3 0.02
31 6 0.03
32 103 0.52
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.34
Consensus pattern (32 bp):
TTTAAAATAAATCAATCCATACTAATAAATTA
Found at i:2230149 original size:14 final size:14
Alignment explanation
Indices: 2230132--2230185 Score: 54
Period size: 14 Copynumber: 3.6 Consensus size: 14
2230122 CAATCCATAC
2230132 AAATAAATTATTTA
1 AAATAAATTATTTA
*
2230146 AAATAAATCAATTCATA
1 AAATAAAT-TATT--TA
*
2230163 CTAATAAATTATTTA
1 -AAATAAATTATTTA
2230178 AAATAAAT
1 AAATAAAT
2230186 CAATCCATAT
Statistics
Matches: 32, Mismatches: 4, Indels: 8
0.73 0.09 0.18
Matches are distributed among these distances:
14 15 0.47
15 5 0.16
17 5 0.16
18 7 0.22
ACGTcount: A:0.57, C:0.06, G:0.00, T:0.37
Consensus pattern (14 bp):
AAATAAATTATTTA
Found at i:2230200 original size:22 final size:22
Alignment explanation
Indices: 2230174--2230216 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
2230164 TAATAAATTA
2230174 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
2230196 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
2230217 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:2230225 original size:22 final size:22
Alignment explanation
Indices: 2230176--2230224 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
2230166 ATAAATTATT
**
2230176 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
2230198 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
2230221 TAAA
1 TAAA
2230225 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:2230279 original size:22 final size:22
Alignment explanation
Indices: 2230230--2230278 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
2230220 ATAAATTATT
**
2230230 TAAAATAAATCAATCAATATTT
1 TAAAATAAATCAATCAATATAA
*
2230252 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCAATA-TAA
2230275 TAAA
1 TAAA
2230279 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.57, C:0.12, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCAATATAA
Found at i:2230297 original size:22 final size:22
Alignment explanation
Indices: 2230272--2230315 Score: 54
Period size: 22 Copynumber: 2.0 Consensus size: 22
2230262 CAATCCATAC
2230272 TAATAAAT-TATTTAAAATAAAT
1 TAATAAATAT-TTTAAAATAAAT
**
2230294 TAATCCATATTTTAAAATAAAT
1 TAATAAATATTTTAAAATAAAT
2230316 CAATCCATTA
Statistics
Matches: 19, Mismatches: 2, Indels: 2
0.83 0.09 0.09
Matches are distributed among these distances:
22 18 0.95
23 1 0.05
ACGTcount: A:0.55, C:0.05, G:0.00, T:0.41
Consensus pattern (22 bp):
TAATAAATATTTTAAAATAAAT
Found at i:2230320 original size:22 final size:22
Alignment explanation
Indices: 2230282--2230323 Score: 75
Period size: 22 Copynumber: 1.9 Consensus size: 22
2230272 TAATAAATTA
*
2230282 TTTAAAATAAATTAATCCATAT
1 TTTAAAATAAATCAATCCATAT
2230304 TTTAAAATAAATCAATCCAT
1 TTTAAAATAAATCAATCCAT
2230324 TACTATACTT
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.50, C:0.12, G:0.00, T:0.38
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:2230583 original size:2 final size:2
Alignment explanation
Indices: 2230576--2230606 Score: 53
Period size: 2 Copynumber: 15.5 Consensus size: 2
2230566 GATTAATTAG
*
2230576 TA TA TA TA CA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
2230607 GTGCGCGCGC
Statistics
Matches: 27, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.48, C:0.03, G:0.00, T:0.48
Consensus pattern (2 bp):
TA
Found at i:2231883 original size:29 final size:29
Alignment explanation
Indices: 2231851--2231914 Score: 67
Period size: 31 Copynumber: 2.1 Consensus size: 29
2231841 CAATACAGTC
*
2231851 TCCCAACATTTAGTATG-TTTTCAATATGG
1 TCCCAACATTTAGTATGATTGT-AATATGG
* *
2231880 TCCCCCAATATTTAGTCTGATTGTAATATGG
1 T--CCCAACATTTAGTATGATTGTAATATGG
2231911 TCCC
1 TCCC
2231915 CGACGTAACT
Statistics
Matches: 29, Mismatches: 3, Indels: 6
0.76 0.08 0.16
Matches are distributed among these distances:
29 4 0.14
31 22 0.76
32 3 0.10
ACGTcount: A:0.25, C:0.22, G:0.14, T:0.39
Consensus pattern (29 bp):
TCCCAACATTTAGTATGATTGTAATATGG
Found at i:2232083 original size:25 final size:25
Alignment explanation
Indices: 2232030--2232082 Score: 69
Period size: 23 Copynumber: 2.2 Consensus size: 25
2232020 TAAATAGTTG
2232030 TTATACTTTTTTA--AAAAAATAATA
1 TTATA-TTTTTTATTAAAAAATAATA
2232054 TTATATTTTTTATTAAAAAAT-AT-
1 TTATATTTTTTATTAAAAAATAATA
2232077 TTATAT
1 TTATAT
2232083 AATTATTATT
Statistics
Matches: 27, Mismatches: 0, Indels: 5
0.84 0.00 0.16
Matches are distributed among these distances:
23 13 0.48
24 7 0.26
25 7 0.26
ACGTcount: A:0.45, C:0.02, G:0.00, T:0.53
Consensus pattern (25 bp):
TTATATTTTTTATTAAAAAATAATA
Found at i:2232111 original size:21 final size:19
Alignment explanation
Indices: 2232074--2232117 Score: 52
Period size: 19 Copynumber: 2.2 Consensus size: 19
2232064 TATTAAAAAA
* *
2232074 TATTTATATAATTATTATT
1 TATTTAAATAATTATTAAT
2232093 TATTTAAATATATTAATTAAT
1 TATTTAAATA-ATT-ATTAAT
2232114 TATT
1 TATT
2232118 ATTTGTGCTA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 9 0.43
20 3 0.14
21 9 0.43
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (19 bp):
TATTTAAATAATTATTAAT
Found at i:2232120 original size:28 final size:29
Alignment explanation
Indices: 2232040--2232121 Score: 91
Period size: 29 Copynumber: 3.0 Consensus size: 29
2232030 TTATACTTTT
* *
2232040 TTAAAAAA-A-TAATATTA-TATTTTTTA
1 TTAAAAAATATTAATATAATTATTATTTA
*
2232066 TTAAAAAATATTTATATAATTATTATTTA
1 TTAAAAAATATTAATATAATTATTATTTA
* *
2232095 TTTAAATATATTAAT-TAATTATTATTT
1 TTAAAAAATATTAATATAATTATTATTT
2232122 GTGCTAATTA
Statistics
Matches: 47, Mismatches: 6, Indels: 4
0.82 0.11 0.07
Matches are distributed among these distances:
26 8 0.17
27 1 0.02
28 18 0.38
29 20 0.43
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (29 bp):
TTAAAAAATATTAATATAATTATTATTTA
Found at i:2232133 original size:29 final size:29
Alignment explanation
Indices: 2232073--2232135 Score: 74
Period size: 29 Copynumber: 2.2 Consensus size: 29
2232063 TTATTAAAAA
* *
2232073 ATATTTATATAATTATTATTTATTTAAAT
1 ATATTAATATAATTATTATTTATCTAAAT
* *
2232102 ATATTAAT-TAATTATTATTTGTGCTAATT
1 ATATTAATATAATTATTATTTAT-CTAAAT
2232131 ATATT
1 ATATT
2232136 TGTTTGCCTA
Statistics
Matches: 29, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
28 13 0.45
29 16 0.55
ACGTcount: A:0.38, C:0.02, G:0.03, T:0.57
Consensus pattern (29 bp):
ATATTAATATAATTATTATTTATCTAAAT
Found at i:2232235 original size:29 final size:30
Alignment explanation
Indices: 2232203--2232265 Score: 69
Period size: 30 Copynumber: 2.2 Consensus size: 30
2232193 CTCAAGACAT
2232203 TTTAATGAT-ATG-ATAATATTTTTTTTAAA
1 TTTAATGATAATGTATAATATTTTTTTT-AA
* * *
2232232 TTT-ATGTTAATGTTTATTATTTTTTTTAA
1 TTTAATGATAATGTATAATATTTTTTTTAA
2232261 TTTAA
1 TTTAA
2232266 ATTTATCATG
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
28 4 0.14
29 11 0.39
30 13 0.46
ACGTcount: A:0.32, C:0.00, G:0.06, T:0.62
Consensus pattern (30 bp):
TTTAATGATAATGTATAATATTTTTTTTAA
Found at i:2236770 original size:2 final size:2
Alignment explanation
Indices: 2236761--2236799 Score: 71
Period size: 2 Copynumber: 20.0 Consensus size: 2
2236751 TGTTGAAAAA
2236761 AT AT -T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
2236800 TGAGAGTTTA
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
1 1 0.03
2 35 0.97
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
AT
Found at i:2238187 original size:70 final size:70
Alignment explanation
Indices: 2238111--2238248 Score: 267
Period size: 70 Copynumber: 2.0 Consensus size: 70
2238101 AGGACGTGTT
*
2238111 TGTATACTCCATGGAGAAAAATGTCATCCACTTGAACCATTTGTTTTTAGTAACGAAAACCTTCA
1 TGTATACTCCATGGAGAAAAATGTCATCCACTTGAACCATTTGTTTTTAGTAACAAAAACCTTCA
2238176 ATGAC
66 ATGAC
2238181 TGTATACTCCATGGAGAAAAATGTCATCCACTTGAACCATTTGTTTTTAGTAACAAAAACCTTCA
1 TGTATACTCCATGGAGAAAAATGTCATCCACTTGAACCATTTGTTTTTAGTAACAAAAACCTTCA
2238246 ATG
66 ATG
2238249 GATTGAAAAC
Statistics
Matches: 67, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
70 67 1.00
ACGTcount: A:0.35, C:0.20, G:0.14, T:0.32
Consensus pattern (70 bp):
TGTATACTCCATGGAGAAAAATGTCATCCACTTGAACCATTTGTTTTTAGTAACAAAAACCTTCA
ATGAC
Found at i:2239817 original size:5 final size:5
Alignment explanation
Indices: 2239807--2239835 Score: 58
Period size: 5 Copynumber: 5.8 Consensus size: 5
2239797 TAGCTCTCCC
2239807 TCTTT TCTTT TCTTT TCTTT TCTTT TCTT
1 TCTTT TCTTT TCTTT TCTTT TCTTT TCTT
2239836 ATGAAAAACG
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 24 1.00
ACGTcount: A:0.00, C:0.21, G:0.00, T:0.79
Consensus pattern (5 bp):
TCTTT
Found at i:2241633 original size:4 final size:4
Alignment explanation
Indices: 2241624--2241653 Score: 60
Period size: 4 Copynumber: 7.5 Consensus size: 4
2241614 ATTATTGTCG
2241624 ATAA ATAA ATAA ATAA ATAA ATAA ATAA AT
1 ATAA ATAA ATAA ATAA ATAA ATAA ATAA AT
2241654 TCTCTTCGAA
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 26 1.00
ACGTcount: A:0.73, C:0.00, G:0.00, T:0.27
Consensus pattern (4 bp):
ATAA
Found at i:2244006 original size:9 final size:9
Alignment explanation
Indices: 2243992--2244017 Score: 52
Period size: 9 Copynumber: 2.9 Consensus size: 9
2243982 AAGAAATGGT
2243992 AATTAATAA
1 AATTAATAA
2244001 AATTAATAA
1 AATTAATAA
2244010 AATTAATA
1 AATTAATA
2244018 TAATGATATA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 17 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (9 bp):
AATTAATAA
Found at i:2244934 original size:15 final size:16
Alignment explanation
Indices: 2244909--2244941 Score: 50
Period size: 15 Copynumber: 2.1 Consensus size: 16
2244899 GTATAAGGAA
2244909 TACATTCAGAATCATT
1 TACATTCAGAATCATT
*
2244925 TACA-TCAGAATTATT
1 TACATTCAGAATCATT
2244940 TA
1 TA
2244942 AGATTTAGAC
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
15 12 0.75
16 4 0.25
ACGTcount: A:0.39, C:0.15, G:0.06, T:0.39
Consensus pattern (16 bp):
TACATTCAGAATCATT
Found at i:2245594 original size:25 final size:25
Alignment explanation
Indices: 2245558--2245626 Score: 95
Period size: 25 Copynumber: 2.8 Consensus size: 25
2245548 TTTGAGGTTG
2245558 ATTTA-TTCATTTCAGAGCTGAAGGT
1 ATTTAGTT-ATTTCAGAGCTGAAGGT
*
2245583 ATTTAGTTATTTCAGAGTTGAAGGT
1 ATTTAGTTATTTCAGAGCTGAAGGT
* *
2245608 AATTAGTTATTCCAGAGCT
1 ATTTAGTTATTTCAGAGCT
2245627 TGGATTTACT
Statistics
Matches: 39, Mismatches: 4, Indels: 2
0.87 0.09 0.04
Matches are distributed among these distances:
25 37 0.95
26 2 0.05
ACGTcount: A:0.29, C:0.10, G:0.20, T:0.41
Consensus pattern (25 bp):
ATTTAGTTATTTCAGAGCTGAAGGT
Found at i:2250616 original size:3 final size:3
Alignment explanation
Indices: 2250610--2250713 Score: 154
Period size: 3 Copynumber: 34.7 Consensus size: 3
2250600 TTTTTATCCA
* ** *
2250610 TAT TAT TAT TAT TAA TAT TAT TAT TAT CCT TAT TAT TAT TAA TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
2250658 TAT TAT CAT TAT TAT TAT TAT TAT TAT TAT TAT TAT CAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
2250706 TAT TAT TA
1 TAT TAT TA
2250714 AATATATTAA
Statistics
Matches: 89, Mismatches: 12, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
3 89 1.00
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.62
Consensus pattern (3 bp):
TAT
Found at i:2252893 original size:18 final size:18
Alignment explanation
Indices: 2252846--2252894 Score: 57
Period size: 18 Copynumber: 2.8 Consensus size: 18
2252836 CTTTTCATTC
2252846 TTTTTA-TTTATTTATTA
1 TTTTTATTTTATTTATTA
**
2252863 TTTTTATAATATTTA-TA
1 TTTTTATTTTATTTATTA
2252880 TGTTTTATTTTATTT
1 T-TTTTATTTTATTT
2252895 GCAAGTATTT
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
17 9 0.35
18 17 0.65
ACGTcount: A:0.24, C:0.00, G:0.02, T:0.73
Consensus pattern (18 bp):
TTTTTATTTTATTTATTA
Found at i:2252916 original size:13 final size:15
Alignment explanation
Indices: 2252885--2252921 Score: 53
Period size: 15 Copynumber: 2.7 Consensus size: 15
2252875 TTATATGTTT
2252885 TATTTTATTTGCAAG
1 TATTTTATTTGCAAG
2252900 TATTTTATTT-C-AG
1 TATTTTATTTGCAAG
2252913 TA-TTTATTT
1 TATTTTATTT
2252922 TTCTGTCAAA
Statistics
Matches: 22, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
12 7 0.32
13 4 0.18
14 1 0.05
15 10 0.45
ACGTcount: A:0.24, C:0.05, G:0.08, T:0.62
Consensus pattern (15 bp):
TATTTTATTTGCAAG
Found at i:2263535 original size:10 final size:10
Alignment explanation
Indices: 2263520--2263576 Score: 52
Period size: 9 Copynumber: 6.1 Consensus size: 10
2263510 ATGCTTGAAG
2263520 AGAAAAAAGA
1 AGAAAAAAGA
2263530 AGAAAAAAGA
1 AGAAAAAAGA
2263540 A-AAAAAA-A
1 AGAAAAAAGA
*
2263548 TAG-AAAATGA
1 -AGAAAAAAGA
2263558 A-AAAAAA-A
1 AGAAAAAAGA
*
2263566 GGAAAAAAGA
1 AGAAAAAAGA
2263576 A
1 A
2263577 AAAGGGGGTC
Statistics
Matches: 37, Mismatches: 4, Indels: 12
0.70 0.08 0.23
Matches are distributed among these distances:
8 2 0.05
9 22 0.59
10 13 0.35
ACGTcount: A:0.81, C:0.00, G:0.16, T:0.04
Consensus pattern (10 bp):
AGAAAAAAGA
Found at i:2263542 original size:17 final size:17
Alignment explanation
Indices: 2263520--2263579 Score: 75
Period size: 18 Copynumber: 3.4 Consensus size: 17
2263510 ATGCTTGAAG
*
2263520 AGAAAAAAGAAGAAAAA
1 AGAAAAAAAAAGAAAAA
*
2263537 AGAAAAAAAAATAGAAAA
1 AGAAAAAAAAAGA-AAAA
*
2263555 TGAAAAAAAAAGGAAAAA
1 AGAAAAAAAAA-GAAAAA
2263573 AGAAAAA
1 AGAAAAA
2263580 GGGGGTCAAG
Statistics
Matches: 36, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
17 11 0.31
18 24 0.67
19 1 0.03
ACGTcount: A:0.82, C:0.00, G:0.15, T:0.03
Consensus pattern (17 bp):
AGAAAAAAAAAGAAAAA
Found at i:2264916 original size:82 final size:82
Alignment explanation
Indices: 2264706--2265295 Score: 1056
Period size: 82 Copynumber: 7.2 Consensus size: 82
2264696 AAACATTAAA
*
2264706 TGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTTTAAC
1 TGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTTTAGC
2264771 AGAACCAATCATTGAATT
66 AGAA-CAATCATTGAATT
*
2264789 TGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTAGCTGACCTGGTTTAGC
1 TGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTTTAGC
*
2264854 AGAACAGTCATTGAATT
66 AGAACAATCATTGAATT
*
2264871 TGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTTTAAC
1 TGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTTTAGC
2264936 AGAACCAATCATTGAATT
66 AGAA-CAATCATTGAATT
2264954 TGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTTTAGC
1 TGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTTTAGC
*
2265019 AGAACAGTCATTGAATT
66 AGAACAATCATTGAATT
2265036 TGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTTTAGC
1 TGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTTTAGC
*
2265101 AGAACAGTCATTGAATT
66 AGAACAATCATTGAATT
2265118 TGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTTTAGC
1 TGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTTTAGC
2265183 AGAACAATCATTGAATT
66 AGAACAATCATTGAATT
* * * *
2265200 TAGAAGATGAATTTTCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG-TTGGA
1 TGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTTTAG-
2265264 CAGAACAATCATTGAATT
65 CAGAACAATCATTGAATT
2265282 TGGAAGATGAATTT
1 TGGAAGATGAATTT
2265296 GCTCATAGTA
Statistics
Matches: 491, Mismatches: 14, Indels: 5
0.96 0.03 0.01
Matches are distributed among these distances:
81 3 0.01
82 341 0.69
83 147 0.30
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.35
Consensus pattern (82 bp):
TGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTTTAGC
AGAACAATCATTGAATT
Found at i:2265208 original size:164 final size:165
Alignment explanation
Indices: 2264706--2265295 Score: 1085
Period size: 165 Copynumber: 3.6 Consensus size: 165
2264696 AAACATTAAA
2264706 TGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTTTAAC
1 TGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTTTAAC
2264771 AGAACCAATCATTGAATTTGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGT
66 AGAACCAATCATTGAATTTGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGT
*
2264836 TAGCTGACCTGGTTTAGCAGAACAGTCATTGAATT
131 TATCTGACCTGGTTTAGCAGAACAGTCATTGAATT
2264871 TGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTTTAAC
1 TGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTTTAAC
2264936 AGAACCAATCATTGAATTTGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGT
66 AGAACCAATCATTGAATTTGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGT
2265001 TATCTGACCTGGTTTAGCAGAACAGTCATTGAATT
131 TATCTGACCTGGTTTAGCAGAACAGTCATTGAATT
*
2265036 TGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTTTAGC
1 TGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTTTAAC
*
2265101 AGAA-CAGTCATTGAATTTGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGT
66 AGAACCAATCATTGAATTTGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGT
*
2265165 TATCTGACCTGGTTTAGCAGAACAATCATTGAATT
131 TATCTGACCTGGTTTAGCAGAACAGTCATTGAATT
* * * **
2265200 TAGAAGATGAATTTTCCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTGGAC
1 TGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTTTAAC
2265265 AGAA-CAATCATTGAATTTGGAAGATGAATTT
66 AGAACCAATCATTGAATTTGGAAGATGAATTT
2265296 GCTCATAGTA
Statistics
Matches: 414, Mismatches: 11, Indels: 1
0.97 0.03 0.00
Matches are distributed among these distances:
164 182 0.44
165 232 0.56
ACGTcount: A:0.29, C:0.14, G:0.21, T:0.35
Consensus pattern (165 bp):
TGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGACCTGGTTTAAC
AGAACCAATCATTGAATTTGGAAGATGAATTTACCAATAGCATCTTCTGGAAGTGTTCTTTGAGT
TATCTGACCTGGTTTAGCAGAACAGTCATTGAATT
Found at i:2266112 original size:113 final size:113
Alignment explanation
Indices: 2265914--2266684 Score: 1294
Period size: 113 Copynumber: 6.8 Consensus size: 113
2265904 CAAAGATTCA
* * *
2265914 AATCCATCATTTGATGGAACAGCTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGA
1 AATCCATCATTTGATGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGA
*
2265979 AGGAAGAAGAAATTCATAATGAGAAGAATTTGTTCAACCTTTTACCTG
66 AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTG
* *
2266027 AATCCATCATTTGGTGGATCATCTTTTACAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGA
1 AATCCATCATTTGATGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGA
2266092 AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTG
66 AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTG
* * *
2266140 AATCCATCATTTGATGGAACAGCTTTTCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGA
1 AATCCATCATTTGATGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGA
2266205 AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTG
66 AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTG
*
2266253 AATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGA
1 AATCCATCATTTGATGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGA
2266318 AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTG
66 AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTG
*
2266366 AATCCATCATTTGGTGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGA
1 AATCCATCATTTGATGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGA
* *
2266431 AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTTG
66 AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTG
* * * *
2266479 AATTCATCATTTGATGGATCAACATTGCCAG-GTAAAGTTCATAATGAGAAGAACTCATCTGAAG
1 AATCCATCATTTGATGGATCATCTTTTCCAGAG-AAAGTTCATAATGAGAAGAACTCATCTGAAG
* *
2266543 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTGCTTG
65 AAGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTG
* * * *
2266592 AATTCATCATTTGATGGATCAACATTGCCAG-GTAAAGTTCATAATGAGAAGAACTCATCTGAAG
1 AATCCATCATTTGATGGATCATCTTTTCCAGAG-AAAGTTCATAATGAGAAGAACTCATCTGAAG
*
2266656 AAGGAAGAAAAAGTTCATAATGAGAAGAA
65 AAGGAAGAAGAAGTTCATAATGAGAAGAA
2266685 CTCATCAAGA
Statistics
Matches: 634, Mismatches: 23, Indels: 2
0.96 0.03 0.00
Matches are distributed among these distances:
112 1 0.00
113 633 1.00
ACGTcount: A:0.38, C:0.14, G:0.20, T:0.28
Consensus pattern (113 bp):
AATCCATCATTTGATGGATCATCTTTTCCAGAGAAAGTTCATAATGAGAAGAACTCATCTGAAGA
AGGAAGAAGAAGTTCATAATGAGAAGAATTTGTTCAACCTTTTACCTG
Found at i:2266943 original size:3 final size:3
Alignment explanation
Indices: 2266937--2267034 Score: 142
Period size: 3 Copynumber: 32.7 Consensus size: 3
2266927 TTTTTATCCA
* ** *
2266937 TAT TAT TAT TAT TAA TAT TAT TAT TAT CCT TAT TAT TAT TAA TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
* *
2266985 TAT TAT CAT TAT TAT TAT TAT TAT TAT TAT CAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
2267033 TA
1 TA
2267035 AATATATTAA
Statistics
Matches: 83, Mismatches: 12, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
3 83 1.00
ACGTcount: A:0.35, C:0.04, G:0.00, T:0.61
Consensus pattern (3 bp):
TAT
Found at i:2270758 original size:31 final size:32
Alignment explanation
Indices: 2270716--2270781 Score: 98
Period size: 31 Copynumber: 2.1 Consensus size: 32
2270706 AAAAAATCGG
* *
2270716 GGTCGGGTTTTTTTAAGTTTGATATTCGGG-C
1 GGTCGGATTTTTTTAAGTGTGATATTCGGGTC
*
2270747 GGTCGGATTTTTTTAAGTGTGATGTTCGGGTC
1 GGTCGGATTTTTTTAAGTGTGATATTCGGGTC
2270779 GGT
1 GGT
2270782 TTTTTTTTTT
Statistics
Matches: 31, Mismatches: 3, Indels: 1
0.89 0.09 0.03
Matches are distributed among these distances:
31 27 0.87
32 4 0.13
ACGTcount: A:0.12, C:0.09, G:0.35, T:0.44
Consensus pattern (32 bp):
GGTCGGATTTTTTTAAGTGTGATATTCGGGTC
Found at i:2270779 original size:28 final size:29
Alignment explanation
Indices: 2270712--2270788 Score: 93
Period size: 31 Copynumber: 2.6 Consensus size: 29
2270702 TTTAAAAAAA
* *
2270712 TCGGGGTCGGGTTTTTTTAAGTTTGATAT
1 TCGGGGTCGGATTTTTTTAAGTGTGATAT
*
2270741 TCGGGCGGTCGGATTTTTTTAAGTGTGATGT
1 TC-GG-GGTCGGATTTTTTTAAGTGTGATAT
*
2270772 TC-GGGTCGGTTTTTTTT
1 TCGGGGTCGGATTTTTTT
2270789 TTTAAATCGA
Statistics
Matches: 42, Mismatches: 4, Indels: 5
0.82 0.08 0.10
Matches are distributed among these distances:
28 13 0.31
29 3 0.07
30 2 0.05
31 24 0.57
ACGTcount: A:0.10, C:0.09, G:0.32, T:0.48
Consensus pattern (29 bp):
TCGGGGTCGGATTTTTTTAAGTGTGATAT
Found at i:2271318 original size:16 final size:17
Alignment explanation
Indices: 2271297--2271343 Score: 60
Period size: 16 Copynumber: 2.8 Consensus size: 17
2271287 GTTTCATATT
2271297 CAGATTTCAATTCTT-A
1 CAGATTTCAATTCTTCA
*
2271313 CAGATTCCAATTCCTTCA
1 CAGATTTCAATT-CTTCA
*
2271331 CAAATTTCAATTC
1 CAGATTTCAATTC
2271344 CCTCAGAAAC
Statistics
Matches: 26, Mismatches: 3, Indels: 3
0.81 0.09 0.09
Matches are distributed among these distances:
16 11 0.42
17 4 0.15
18 11 0.42
ACGTcount: A:0.32, C:0.26, G:0.04, T:0.38
Consensus pattern (17 bp):
CAGATTTCAATTCTTCA
Found at i:2271343 original size:18 final size:17
Alignment explanation
Indices: 2271300--2271344 Score: 56
Period size: 18 Copynumber: 2.6 Consensus size: 17
2271290 TCATATTCAG
*
2271300 ATTTCAATT-CTTACAG
1 ATTTCAATTCCTTACAA
*
2271316 ATTCCAATTCCTTCACAA
1 ATTTCAATTCCTT-ACAA
2271334 ATTTCAATTCC
1 ATTTCAATTCC
2271345 CTCAGAAACA
Statistics
Matches: 24, Mismatches: 3, Indels: 2
0.83 0.10 0.07
Matches are distributed among these distances:
16 8 0.33
17 3 0.12
18 13 0.54
ACGTcount: A:0.31, C:0.27, G:0.02, T:0.40
Consensus pattern (17 bp):
ATTTCAATTCCTTACAA
Found at i:2276655 original size:13 final size:13
Alignment explanation
Indices: 2276571--2276655 Score: 55
Period size: 13 Copynumber: 6.0 Consensus size: 13
2276561 ATTGAAAAAA
2276571 ATATATAATATATAT
1 ATATATAA-AT-TAT
*
2276586 ATAATATAAGTT-T
1 AT-ATATAAATTAT
*
2276599 ATATATAAACTAT
1 ATATATAAATTAT
*
2276612 ACATATAAACTATAT
1 ATATATAAA-T-TAT
*
2276627 AATTATTATAAGTTAT
1 -A-TA-TATAAATTAT
2276643 ATATATAAATTAT
1 ATATATAAATTAT
2276656 GTTTATATCG
Statistics
Matches: 55, Mismatches: 8, Indels: 16
0.70 0.10 0.20
Matches are distributed among these distances:
12 7 0.13
13 21 0.38
14 3 0.05
15 7 0.13
16 10 0.18
17 2 0.04
18 5 0.09
ACGTcount: A:0.51, C:0.04, G:0.02, T:0.44
Consensus pattern (13 bp):
ATATATAAATTAT
Found at i:2277092 original size:45 final size:45
Alignment explanation
Indices: 2277023--2277122 Score: 191
Period size: 45 Copynumber: 2.2 Consensus size: 45
2277013 ATGCTGAAGA
*
2277023 ATGTGCAGATACAGATAAACATATGTTTTCTTATTGTTTCCGAAC
1 ATGTACAGATACAGATAAACATATGTTTTCTTATTGTTTCCGAAC
2277068 ATGTACAGATACAGATAAACATATGTTTTCTTATTGTTTCCGAAC
1 ATGTACAGATACAGATAAACATATGTTTTCTTATTGTTTCCGAAC
2277113 ATGTACAGAT
1 ATGTACAGAT
2277123 TTTTATGCTG
Statistics
Matches: 54, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 54 1.00
ACGTcount: A:0.33, C:0.15, G:0.15, T:0.37
Consensus pattern (45 bp):
ATGTACAGATACAGATAAACATATGTTTTCTTATTGTTTCCGAAC
Found at i:2277491 original size:24 final size:24
Alignment explanation
Indices: 2277457--2277528 Score: 101
Period size: 24 Copynumber: 3.0 Consensus size: 24
2277447 AAACGGAGAT
* *
2277457 ATCAGAAATCAAAATAGAATTCAG
1 ATCAGAAATCATAACAGAATTCAG
*
2277481 ATCA-AATATCATAACAGAATCCAG
1 ATCAGAA-ATCATAACAGAATTCAG
2277505 ATCAGAAATCATAACAGAATTCAG
1 ATCAGAAATCATAACAGAATTCAG
2277529 GTAATGTATC
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
23 2 0.05
24 38 0.90
25 2 0.05
ACGTcount: A:0.51, C:0.17, G:0.11, T:0.21
Consensus pattern (24 bp):
ATCAGAAATCATAACAGAATTCAG
Found at i:2279380 original size:36 final size:36
Alignment explanation
Indices: 2279333--2279405 Score: 137
Period size: 36 Copynumber: 2.0 Consensus size: 36
2279323 GATAAATTAT
2279333 AATCTACATATCCATGGCTGATTCTTTTATCACTTA
1 AATCTACATATCCATGGCTGATTCTTTTATCACTTA
*
2279369 AATCTACATATCGATGGCTGATTCTTTTATCACTTA
1 AATCTACATATCCATGGCTGATTCTTTTATCACTTA
2279405 A
1 A
2279406 TTCTTGAACT
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.29, C:0.21, G:0.10, T:0.41
Consensus pattern (36 bp):
AATCTACATATCCATGGCTGATTCTTTTATCACTTA
Found at i:2282236 original size:24 final size:25
Alignment explanation
Indices: 2282130--2282238 Score: 84
Period size: 24 Copynumber: 4.5 Consensus size: 25
2282120 AAACGGAGAT
* *
2282130 ATCAGAAATCAAAATAGAATTC-AG
1 ATCAGAAATCAGAACAGAATTCAAG
* * * *
2282154 ATCAGATATCATAAAAGAA-TCCAG
1 ATCAGAAATCAGAACAGAATTCAAG
*
2282178 ATCAGAAATCAGAACATAATTC-AG
1 ATCAGAAATCAGAACAGAATTCAAG
* * *
2282202 GTAATG-TATCAGAACAGAATTCAAG
1 ATCA-GAAATCAGAACAGAATTCAAG
2282227 -TCAGAAATCAGA
1 ATCAGAAATCAGA
2282239 TAAAATATTT
Statistics
Matches: 67, Mismatches: 13, Indels: 10
0.74 0.14 0.11
Matches are distributed among these distances:
23 3 0.04
24 59 0.88
25 5 0.07
ACGTcount: A:0.50, C:0.15, G:0.15, T:0.21
Consensus pattern (25 bp):
ATCAGAAATCAGAACAGAATTCAAG
Found at i:2284054 original size:36 final size:36
Alignment explanation
Indices: 2284007--2284079 Score: 128
Period size: 36 Copynumber: 2.0 Consensus size: 36
2283997 GATAAATTAT
2284007 AATCTACATATCCATGGCTGATTCTTTTATCACTTA
1 AATCTACATATCCATGGCTGATTCTTTTATCACTTA
* *
2284043 AATCTACATATCGATGGTTGATTCTTTTATCACTTA
1 AATCTACATATCCATGGCTGATTCTTTTATCACTTA
2284079 A
1 A
2284080 TTCCAGAACT
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 35 1.00
ACGTcount: A:0.29, C:0.19, G:0.10, T:0.42
Consensus pattern (36 bp):
AATCTACATATCCATGGCTGATTCTTTTATCACTTA
Found at i:2284759 original size:18 final size:18
Alignment explanation
Indices: 2284738--2284773 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
2284728 CACCGGTCAA
*
2284738 CGGGTCAACGGGTCGGGT
1 CGGGTAAACGGGTCGGGT
2284756 CGGGTAAACGGGTCGGGT
1 CGGGTAAACGGGTCGGGT
2284774 TGAAACCGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.14, C:0.19, G:0.50, T:0.17
Consensus pattern (18 bp):
CGGGTAAACGGGTCGGGT
Found at i:2286181 original size:7 final size:7
Alignment explanation
Indices: 2286151--2286208 Score: 62
Period size: 7 Copynumber: 8.3 Consensus size: 7
2286141 AGTTTTATAG
2286151 AAACCCT
1 AAACCCT
*
2286158 AAATCCT
1 AAACCCT
**
2286165 AAACTTT
1 AAACCCT
2286172 AAACCCT
1 AAACCCT
2286179 AAACCCT
1 AAACCCT
*
2286186 AAACACT
1 AAACCCT
**
2286193 AAACATT
1 AAACCCT
2286200 AAACCCT
1 AAACCCT
2286207 AA
1 AA
2286209 TATAAATAGA
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
7 41 1.00
ACGTcount: A:0.48, C:0.31, G:0.00, T:0.21
Consensus pattern (7 bp):
AAACCCT
Found at i:2286195 original size:21 final size:21
Alignment explanation
Indices: 2286151--2286208 Score: 71
Period size: 21 Copynumber: 2.8 Consensus size: 21
2286141 AGTTTTATAG
* **
2286151 AAACCCTAAATCCTAAACTTT
1 AAACCCTAAACCCTAAACACT
2286172 AAACCCTAAACCCTAAACACT
1 AAACCCTAAACCCTAAACACT
**
2286193 AAACATTAAACCCTAA
1 AAACCCTAAACCCTAA
2286209 TATAAATAGA
Statistics
Matches: 32, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.48, C:0.31, G:0.00, T:0.21
Consensus pattern (21 bp):
AAACCCTAAACCCTAAACACT
Found at i:2286905 original size:14 final size:14
Alignment explanation
Indices: 2286886--2286932 Score: 50
Period size: 14 Copynumber: 3.7 Consensus size: 14
2286876 TATTATTTTT
2286886 TATATAAATTAAAC
1 TATATAAATTAAAC
2286900 TATAT-AATT----
1 TATATAAATTAAAC
2286909 TATATAAATTAAAC
1 TATATAAATTAAAC
*
2286923 TATATTAATT
1 TATATAAATT
2286933 TTCCTTTTCA
Statistics
Matches: 27, Mismatches: 1, Indels: 10
0.71 0.03 0.26
Matches are distributed among these distances:
9 5 0.19
10 4 0.15
13 4 0.15
14 14 0.52
ACGTcount: A:0.51, C:0.04, G:0.00, T:0.45
Consensus pattern (14 bp):
TATATAAATTAAAC
Found at i:2286914 original size:23 final size:24
Alignment explanation
Indices: 2286884--2286933 Score: 93
Period size: 23 Copynumber: 2.1 Consensus size: 24
2286874 AATATTATTT
2286884 TTTATATAAATTAAACTATA-TAA
1 TTTATATAAATTAAACTATATTAA
2286907 TTTATATAAATTAAACTATATTAA
1 TTTATATAAATTAAACTATATTAA
2286931 TTT
1 TTT
2286934 TCCTTTTCAT
Statistics
Matches: 26, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
23 20 0.77
24 6 0.23
ACGTcount: A:0.48, C:0.04, G:0.00, T:0.48
Consensus pattern (24 bp):
TTTATATAAATTAAACTATATTAA
Found at i:2287234 original size:16 final size:16
Alignment explanation
Indices: 2287213--2287256 Score: 70
Period size: 16 Copynumber: 2.8 Consensus size: 16
2287203 ACGAGTCAGG
*
2287213 TTAAAAACATGTTAGT
1 TTAAAAACAGGTTAGT
*
2287229 TTAAAAATAGGTTAGT
1 TTAAAAACAGGTTAGT
2287245 TTAAAAACAGGT
1 TTAAAAACAGGT
2287257 CGGGTAATAC
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.45, C:0.05, G:0.16, T:0.34
Consensus pattern (16 bp):
TTAAAAACAGGTTAGT
Found at i:2296728 original size:16 final size:17
Alignment explanation
Indices: 2296697--2296730 Score: 52
Period size: 16 Copynumber: 2.1 Consensus size: 17
2296687 GGGAGAAAAG
2296697 AATGACCTACAACGTTA
1 AATGACCTACAACGTTA
*
2296714 AATGACCT-GAACGTTA
1 AATGACCTACAACGTTA
2296730 A
1 A
2296731 CGCCTTTATT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
16 8 0.50
17 8 0.50
ACGTcount: A:0.41, C:0.21, G:0.15, T:0.24
Consensus pattern (17 bp):
AATGACCTACAACGTTA
Found at i:2297577 original size:20 final size:20
Alignment explanation
Indices: 2297552--2297619 Score: 73
Period size: 20 Copynumber: 3.3 Consensus size: 20
2297542 ACACGAAAGC
2297552 CAAATTTACAACACAATTTT
1 CAAATTTACAACACAATTTT
* * *
2297572 CGAATTTGCATCACGAATTTGT
1 CAAATTTACAACAC-AATTT-T
* *
2297594 CAAATTTACAACTCAGTTTT
1 CAAATTTACAACACAATTTT
2297614 CAAATT
1 CAAATT
2297620 CGCAACTCAA
Statistics
Matches: 38, Mismatches: 8, Indels: 4
0.76 0.16 0.08
Matches are distributed among these distances:
20 18 0.47
21 9 0.24
22 11 0.29
ACGTcount: A:0.37, C:0.19, G:0.07, T:0.37
Consensus pattern (20 bp):
CAAATTTACAACACAATTTT
Found at i:2297641 original size:20 final size:20
Alignment explanation
Indices: 2297618--2297673 Score: 85
Period size: 20 Copynumber: 2.8 Consensus size: 20
2297608 AGTTTTCAAA
*
2297618 TTCGCAACTCAAATTCAGAT
1 TTCGCAACTCGAATTCAGAT
* *
2297638 TTCGCAACTTGAATTCCGAT
1 TTCGCAACTCGAATTCAGAT
2297658 TTCGCAACTCGAATTC
1 TTCGCAACTCGAATTC
2297674 GCCAATTTCA
Statistics
Matches: 32, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 32 1.00
ACGTcount: A:0.29, C:0.27, G:0.12, T:0.32
Consensus pattern (20 bp):
TTCGCAACTCGAATTCAGAT
Found at i:2297887 original size:152 final size:152
Alignment explanation
Indices: 2297635--2297999 Score: 491
Period size: 152 Copynumber: 2.4 Consensus size: 152
2297625 CTCAAATTCA
** ** * * * * *
2297635 GATTTCGCAACTTGAATTCCGATTTCGCAACTCGAATTCGCCAATTTCACAATTCAATTTTACCT
1 GATTTCGCAACTCAAATTCAAATTTCACAACTCGAATT--CCGATTTCGCAACTCAATTTTACCA
* * * *
2297700 CGTTTACCTATATAGGTAATTATAACCGGTCAAAATAATGATATTTTCGATAATTTTTTATCGGT
64 CGTTTACCTATAAAGATAATTATAACCAGTCAAAATAATGATATTTTCGATAATTTTTTACCGGT
2297765 TTTGTTAATAATTCAATTTTA-CTG
129 TTTGTTAATAATTCAATTTTATC-G
** *
2297789 GATTTCGCAACTCAGTTTTCAAA-TTCACAACTCGAATTCCGATTTTGCAACTCAATTTTACCAC
1 GATTTCGCAACTCA-AATTCAAATTTCACAACTCGAATTCCGATTTCGCAACTCAATTTTACCAC
* *
2297853 GTTTATCTATAAAGATAATTATAACCAGTCAAAATAATGATATTTTCGATCATTTTTTACCGGTT
65 GTTTACCTATAAAGATAATTATAACCAGTCAAAATAATGATATTTTCGATAATTTTTTACCGGTT
*
2297918 TTGTTAATAGTTCAATTTTATCG
130 TTGTTAATAATTCAATTTTATCG
*
2297941 GATTTCGCAACTCAAATTCAAATTTCGCAACTCGAATTCCGATTTCGCAACTCTAATTT
1 GATTTCGCAACTCAAATTCAAATTTCACAACTCGAATTCCGATTTCGCAACTC-AATTT
2298000 GCCAATTTCG
Statistics
Matches: 184, Mismatches: 23, Indels: 9
0.85 0.11 0.04
Matches are distributed among these distances:
151 6 0.03
152 142 0.77
153 6 0.03
154 26 0.14
155 4 0.02
ACGTcount: A:0.31, C:0.19, G:0.11, T:0.39
Consensus pattern (152 bp):
GATTTCGCAACTCAAATTCAAATTTCACAACTCGAATTCCGATTTCGCAACTCAATTTTACCACG
TTTACCTATAAAGATAATTATAACCAGTCAAAATAATGATATTTTCGATAATTTTTTACCGGTTT
TGTTAATAATTCAATTTTATCG
Found at i:2297967 original size:20 final size:20
Alignment explanation
Indices: 2297942--2297998 Score: 78
Period size: 20 Copynumber: 2.9 Consensus size: 20
2297932 ATTTTATCGG
2297942 ATTTCGCAACTCAAATTCAA
1 ATTTCGCAACTCAAATTCAA
* **
2297962 ATTTCGCAACTCGAATTCCG
1 ATTTCGCAACTCAAATTCAA
*
2297982 ATTTCGCAACTCTAATT
1 ATTTCGCAACTCAAATT
2297999 TGCCAATTTC
Statistics
Matches: 33, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.32, C:0.26, G:0.09, T:0.33
Consensus pattern (20 bp):
ATTTCGCAACTCAAATTCAA
Found at i:2298117 original size:172 final size:173
Alignment explanation
Indices: 2297838--2298164 Score: 516
Period size: 172 Copynumber: 1.9 Consensus size: 173
2297828 CGATTTTGCA
*
2297838 ACTCAATTTTACCACGTTTATCTATAAAGATAATTATAACCAGTCAAAATAATGATATTTTCGAT
1 ACTCAATTTTACCACGTTTACCTATAAAGATAATTATAACCAGTCAAAATAATGATATTTTCGAT
* *
2297903 CATTTTTTACCGGTTTTGTTAATAGTTCAATTTTATCGGATTTCGCAACTCA-AATTCAAATTTC
66 CATTTTTTACCGGTTTTGTTAATAATTCAATTTTACCGGATTTCGCAACTCAGAATTCAAA-TTC
2297967 GCAA-CTCGAATTCCGATTTCGCAACTCTAATTTGCCAATTTCGG
130 GCAACCT-GAATTCCGATTTCGCAACTCTAATTTGCCAATTTCGG
* * * * *
2298011 ACTCAATTTTACCGCGTTTACCTATATAGGTAATTATAACCGGTCAAAATAATGATGTTTTCGAT
1 ACTCAATTTTACCACGTTTACCTATAAAGATAATTATAACCAGTCAAAATAATGATATTTTCGAT
**
2298076 CA-TTTTTACCGGTTTTGTTAATAATTCAATTTTACCGGATTTCGCAACTCAGTTTTCAAATTCG
66 CATTTTTTACCGGTTTTGTTAATAATTCAATTTTACCGGATTTCGCAACTCAGAATTCAAATTCG
*
2298140 CAACCTGAATTCGGATTTCGCAACT
131 CAACCTGAATTCCGATTTCGCAACT
2298165 TGAATTCCTA
Statistics
Matches: 141, Mismatches: 11, Indels: 5
0.90 0.07 0.03
Matches are distributed among these distances:
172 72 0.51
173 69 0.49
ACGTcount: A:0.30, C:0.19, G:0.12, T:0.39
Consensus pattern (173 bp):
ACTCAATTTTACCACGTTTACCTATAAAGATAATTATAACCAGTCAAAATAATGATATTTTCGAT
CATTTTTTACCGGTTTTGTTAATAATTCAATTTTACCGGATTTCGCAACTCAGAATTCAAATTCG
CAACCTGAATTCCGATTTCGCAACTCTAATTTGCCAATTTCGG
Found at i:2298180 original size:192 final size:193
Alignment explanation
Indices: 2297962--2298318 Score: 644
Period size: 193 Copynumber: 1.9 Consensus size: 193
2297952 TCAAATTCAA
* ** * *
2297962 ATTTCGCAACTCGAATTCCGATTTCGCAACTCTAATTTGCCAATTTCG-GACTCAATTTTACCGC
1 ATTTCGCAACTCGAATTCCGATTTCGCAACTCCAATTCACCAATTTCGAAACTCAATTTTACCGA
2298026 GTTTACCTATATAGGTAATTATAACCGGTCAAAATAATGATGTTTTCGATCATTTTTACCGGTTT
66 GTTTACCTATATAGGTAATTATAACCGGTCAAAATAATGATGTTTTCGATCATTTTTACCGGTTT
2298091 TGTTAATAATTCAATTTTACCGGATTTCGCAACTCAGTTTTCAAATTCGCAACCTGAATTCGG
131 TGTTAATAATTCAATTTTACCGGATTTCGCAACTCAGTTTTCAAATTCGCAACCTGAATTCGG
* *
2298154 ATTTCGCAACTTGAATTCCTATTTCGCAACTCCAATTCACCAATTTCGAAACTCAATTTTACCGA
1 ATTTCGCAACTCGAATTCCGATTTCGCAACTCCAATTCACCAATTTCGAAACTCAATTTTACCGA
2298219 GTTTACCTATATAGGTAATTATAACCGGTCAAAATAATGATGTTTTCGATCATTTTTACCGGTTT
66 GTTTACCTATATAGGTAATTATAACCGGTCAAAATAATGATGTTTTCGATCATTTTTACCGGTTT
2298284 TGTTAATAATTCAATTTTACCGGATTTCGCAACTC
131 TGTTAATAATTCAATTTTACCGGATTTCGCAACTC
2298319 GAATTCCTAT
Statistics
Matches: 157, Mismatches: 7, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
192 43 0.27
193 114 0.73
ACGTcount: A:0.29, C:0.21, G:0.13, T:0.38
Consensus pattern (193 bp):
ATTTCGCAACTCGAATTCCGATTTCGCAACTCCAATTCACCAATTTCGAAACTCAATTTTACCGA
GTTTACCTATATAGGTAATTATAACCGGTCAAAATAATGATGTTTTCGATCATTTTTACCGGTTT
TGTTAATAATTCAATTTTACCGGATTTCGCAACTCAGTTTTCAAATTCGCAACCTGAATTCGG
Found at i:2298184 original size:20 final size:20
Alignment explanation
Indices: 2298136--2298184 Score: 71
Period size: 20 Copynumber: 2.5 Consensus size: 20
2298126 AGTTTTCAAA
* *
2298136 TTCGCAACCTGAATTCGGAT
1 TTCGCAACTTGAATTCCGAT
*
2298156 TTCGCAACTTGAATTCCTAT
1 TTCGCAACTTGAATTCCGAT
2298176 TTCGCAACT
1 TTCGCAACT
2298185 CCAATTCACC
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 26 1.00
ACGTcount: A:0.24, C:0.27, G:0.14, T:0.35
Consensus pattern (20 bp):
TTCGCAACTTGAATTCCGAT
Found at i:2298190 original size:20 final size:20
Alignment explanation
Indices: 2298154--2298191 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
2298144 CTGAATTCGG
**
2298154 ATTTCGCAACTTGAATTCCT
1 ATTTCGCAACTCCAATTCCT
2298174 ATTTCGCAACTCCAATTC
1 ATTTCGCAACTCCAATTC
2298192 ACCAATTTCG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.26, C:0.29, G:0.08, T:0.37
Consensus pattern (20 bp):
ATTTCGCAACTCCAATTCCT
Found at i:2298332 original size:20 final size:20
Alignment explanation
Indices: 2298307--2298344 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
2298297 ATTTTACCGG
*
2298307 ATTTCGCAACTCGAATTCCT
1 ATTTCGCAACTCCAATTCCT
2298327 ATTTCGCAACTCCAATTC
1 ATTTCGCAACTCCAATTC
2298345 GCCAATTTCG
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.26, C:0.32, G:0.08, T:0.34
Consensus pattern (20 bp):
ATTTCGCAACTCCAATTCCT
Found at i:2298405 original size:153 final size:154
Alignment explanation
Indices: 2298151--2298454 Score: 574
Period size: 153 Copynumber: 2.0 Consensus size: 154
2298141 AACCTGAATT
*
2298151 CGGATTTCGCAACTTGAATTCCTATTTCGCAACTCCAATTCACCAATTTCGAAACTCAATTTTAC
1 CGGATTTCGCAACTCGAATTCCTATTTCGCAACTCCAATTCACCAATTTCGAAACTCAATTTTAC
*
2298216 CGAGTTTACCTATATAGGTAATTATAACCGGTCAAAATAATGATGTTTTCGATCA-TTTTTACCG
66 CGAGTTTACCTATATAGGTAATTATAACCGATCAAAATAATGATGTTTTCGATCATTTTTTACCG
2298280 GTTTTGTTAATAATTCAATTTTAC
131 GTTTTGTTAATAATTCAATTTTAC
*
2298304 CGGATTTCGCAACTCGAATTCCTATTTCGCAACTCCAATTCGCCAATTTCGAAACTCAATTTTAC
1 CGGATTTCGCAACTCGAATTCCTATTTCGCAACTCCAATTCACCAATTTCGAAACTCAATTTTAC
2298369 CGAGTTTACCTATATAGGTAATTATAACCGATCAAAATAATGATGTTTTCGATCATTTTTTACCG
66 CGAGTTTACCTATATAGGTAATTATAACCGATCAAAATAATGATGTTTTCGATCATTTTTTACCG
2298434 GTTTTGTTAATAATTCAATTT
131 GTTTTGTTAATAATTCAATTT
2298455 AAAAATATAT
Statistics
Matches: 147, Mismatches: 3, Indels: 1
0.97 0.02 0.01
Matches are distributed among these distances:
153 117 0.80
154 30 0.20
ACGTcount: A:0.30, C:0.20, G:0.12, T:0.38
Consensus pattern (154 bp):
CGGATTTCGCAACTCGAATTCCTATTTCGCAACTCCAATTCACCAATTTCGAAACTCAATTTTAC
CGAGTTTACCTATATAGGTAATTATAACCGATCAAAATAATGATGTTTTCGATCATTTTTTACCG
GTTTTGTTAATAATTCAATTTTAC
Found at i:2300353 original size:31 final size:31
Alignment explanation
Indices: 2300317--2300375 Score: 100
Period size: 31 Copynumber: 1.9 Consensus size: 31
2300307 AACTTAAAAG
*
2300317 AGTTTTGCAATACTGAAATTTAAATAATTTT
1 AGTTTTACAATACTGAAATTTAAATAATTTT
*
2300348 AGTTTTATAATACTGAAATTTAAATAAT
1 AGTTTTACAATACTGAAATTTAAATAAT
2300376 CCATACAACT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.42, C:0.05, G:0.08, T:0.44
Consensus pattern (31 bp):
AGTTTTACAATACTGAAATTTAAATAATTTT
Found at i:2300424 original size:22 final size:22
Alignment explanation
Indices: 2300399--2300741 Score: 506
Period size: 22 Copynumber: 15.5 Consensus size: 22
2300389 ATAATAAATT
2300399 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
2300421 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
2300443 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
*
2300465 TTTTAAAATAAATCAATTCATA
1 TTTTAAAATAAATCAATCCATA
2300487 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
***
2300509 TTTTAAAATAAATTTTTCCATA
1 TTTTAAAATAAATCAATCCATA
2300531 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
* *** *
2300553 TTTTAAAATAATTTTTTTTCATA
1 TTTTAAAATAA-ATCAATCCATA
2300576 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
***
2300598 TTTTAAAATAAATTTTTCCATA
1 TTTTAAAATAAATCAATCCATA
*
2300620 TTTTAAAATAAATCAATTCATA
1 TTTTAAAATAAATCAATCCATA
* *** * *
2300642 TTTTAAAATAAGTTTTTTCATG
1 TTTTAAAATAAATCAATCCATA
2300664 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
2300686 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
2300708 TTTTAAAATAAATCAATCCATA
1 TTTTAAAATAAATCAATCCATA
2300730 TTTTAAAATAAA
1 TTTTAAAATAAA
2300742 ATTTTAAAAT
Statistics
Matches: 284, Mismatches: 36, Indels: 2
0.88 0.11 0.01
Matches are distributed among these distances:
22 267 0.94
23 17 0.06
ACGTcount: A:0.47, C:0.11, G:0.01, T:0.42
Consensus pattern (22 bp):
TTTTAAAATAAATCAATCCATA
Found at i:2300787 original size:10 final size:10
Alignment explanation
Indices: 2300772--2300822 Score: 57
Period size: 10 Copynumber: 5.1 Consensus size: 10
2300762 AATTTTAATT
2300772 TCTTTGAAGA
1 TCTTTGAAGA
* *
2300782 TGTTTGAATA
1 TCTTTGAAGA
*
2300792 CCTTTGAAGA
1 TCTTTGAAGA
*
2300802 TGTTTGAAGA
1 TCTTTGAAGA
*
2300812 CCTTTGAAGA
1 TCTTTGAAGA
2300822 T
1 T
2300823 ATAAAACCAT
Statistics
Matches: 31, Mismatches: 10, Indels: 0
0.76 0.24 0.00
Matches are distributed among these distances:
10 31 1.00
ACGTcount: A:0.29, C:0.10, G:0.22, T:0.39
Consensus pattern (10 bp):
TCTTTGAAGA
Found at i:2300798 original size:20 final size:20
Alignment explanation
Indices: 2300773--2300822 Score: 91
Period size: 20 Copynumber: 2.5 Consensus size: 20
2300763 ATTTTAATTT
*
2300773 CTTTGAAGATGTTTGAATAC
1 CTTTGAAGATGTTTGAAGAC
2300793 CTTTGAAGATGTTTGAAGAC
1 CTTTGAAGATGTTTGAAGAC
2300813 CTTTGAAGAT
1 CTTTGAAGAT
2300823 ATAAAACCAT
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 29 1.00
ACGTcount: A:0.30, C:0.10, G:0.22, T:0.38
Consensus pattern (20 bp):
CTTTGAAGATGTTTGAAGAC
Found at i:2303570 original size:3 final size:3
Alignment explanation
Indices: 2303562--2303619 Score: 64
Period size: 3 Copynumber: 19.0 Consensus size: 3
2303552 TGTCCCGGTT
* * *
2303562 TTA TTA TTA TTA ATA -TA TTA TTTA TTA TATA TTT TTA TTA TTA ATA
1 TTA TTA TTA TTA TTA TTA TTA -TTA TTA T-TA TTA TTA TTA TTA TTA
2303608 TTA TTA TTA TTA
1 TTA TTA TTA TTA
2303620 CAAACAGGCC
Statistics
Matches: 47, Mismatches: 5, Indels: 6
0.81 0.09 0.10
Matches are distributed among these distances:
2 2 0.04
3 39 0.83
4 6 0.13
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:2303613 original size:12 final size:11
Alignment explanation
Indices: 2303563--2303617 Score: 55
Period size: 11 Copynumber: 5.1 Consensus size: 11
2303553 GTCCCGGTTT
2303563 TATTATTATTA
1 TATTATTATTA
2303574 -ATATATTATT-
1 TAT-TATTATTA
2303584 TATTATATATT-
1 TATTAT-TATTA
2303595 T-TTATTATTAA
1 TATTATTATT-A
2303606 TATTATTATTA
1 TATTATTATTA
2303617 T
1 T
2303618 TACAAACAGG
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
9 4 0.11
10 9 0.24
11 17 0.45
12 8 0.21
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
TATTATTATTA
Found at i:2304150 original size:16 final size:17
Alignment explanation
Indices: 2304119--2304154 Score: 56
Period size: 17 Copynumber: 2.2 Consensus size: 17
2304109 CAACGAAAAA
2304119 AGAAAAAAAAATAATAG
1 AGAAAAAAAAATAATAG
*
2304136 AGAAAAGAAAA-AATAG
1 AGAAAAAAAAATAATAG
2304152 AGA
1 AGA
2304155 CCAACTCACA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
16 8 0.44
17 10 0.56
ACGTcount: A:0.75, C:0.00, G:0.17, T:0.08
Consensus pattern (17 bp):
AGAAAAAAAAATAATAG
Found at i:2305319 original size:111 final size:108
Alignment explanation
Indices: 2305180--2305384 Score: 261
Period size: 110 Copynumber: 1.9 Consensus size: 108
2305170 TATTTATTTA
* * * *
2305180 TTTTTTAATATTAAGAAAGGGCAGTCTTAAAACA-ATTGGATGTCCATTTTCTGATATTTTTAAA
1 TTTTTTAATATGAAGAAAGAGCAGTCTTAAAACACA-TAGAAGTCC-TTTTCTGATATTTTTAAA
2305244 TAAATAAATATCCTATTTTATAAA-TTATATATTGTTTTAATTATT
64 TAAATAAATATCCTA-TTTATAAATTTATATATTGTTTTAATTATT
* ** *
2305289 TTTTTTAATATCGAAGAAAAGAGCTGTCTTAAGGCACATAGAAGTCCTTTTTTGATATTTTTAAA
1 TTTTTTAATAT-GAAG-AAAGAGCAGTCTTAAAACACATAGAAGTCCTTTTCTGATATTTTTAAA
**
2305354 TAAATAAATATTTTATTTATAAATTTATATA
64 TAAATAAATATCCTATTTATAAATTTATATA
2305385 AATTAATAAA
Statistics
Matches: 82, Mismatches: 10, Indels: 7
0.83 0.10 0.07
Matches are distributed among these distances:
109 19 0.23
110 40 0.49
111 22 0.27
112 1 0.01
ACGTcount: A:0.38, C:0.07, G:0.10, T:0.45
Consensus pattern (108 bp):
TTTTTTAATATGAAGAAAGAGCAGTCTTAAAACACATAGAAGTCCTTTTCTGATATTTTTAAATA
AATAAATATCCTATTTATAAATTTATATATTGTTTTAATTATT
Found at i:2307484 original size:20 final size:20
Alignment explanation
Indices: 2307461--2307516 Score: 51
Period size: 20 Copynumber: 2.8 Consensus size: 20
2307451 ACATTTGCAT
2307461 TTTTCATTTTGCATTTATAC
1 TTTTCATTTTGCATTTATAC
* *
2307481 TTTT-ATATTTGCTTTTGTAC
1 TTTTCAT-TTTGCATTTATAC
* * *
2307501 TATACAATTTGCATTT
1 TTTTCATTTTGCATTT
2307517 TTATTATTAC
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
19 2 0.07
20 25 0.89
21 1 0.04
ACGTcount: A:0.21, C:0.12, G:0.07, T:0.59
Consensus pattern (20 bp):
TTTTCATTTTGCATTTATAC
Found at i:2314251 original size:22 final size:22
Alignment explanation
Indices: 2314226--2314300 Score: 123
Period size: 22 Copynumber: 3.4 Consensus size: 22
2314216 ATCTACACTC
* *
2314226 TTCAAAGATGATATATTATCTT
1 TTCAAAGATGATAGATTCTCTT
2314248 TTCAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
*
2314270 TTTAAAGATGATAGATTCTCTT
1 TTCAAAGATGATAGATTCTCTT
2314292 TTCAAAGAT
1 TTCAAAGAT
2314301 TAAAGCTTTA
Statistics
Matches: 49, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 49 1.00
ACGTcount: A:0.35, C:0.11, G:0.12, T:0.43
Consensus pattern (22 bp):
TTCAAAGATGATAGATTCTCTT
Found at i:2315103 original size:76 final size:76
Alignment explanation
Indices: 2314977--2315158 Score: 294
Period size: 76 Copynumber: 2.4 Consensus size: 76
2314967 CTATTTCCCA
2314977 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
* *
2315042 AGCCTTAGGGT
66 AACCTTAGAGT
*
2315053 CATCTATAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
1 CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
*
2315118 AACCTTCGAGT
66 AACCTTAGAGT
* *
2315129 CAGCTGTAAGCCCTACAGTGCA-GAATGTTT
1 CATCTGTAAGTCCTACAGTGCATG-ATGTTT
2315159 TTTTCTTAAA
Statistics
Matches: 98, Mismatches: 7, Indels: 2
0.92 0.07 0.02
Matches are distributed among these distances:
75 1 0.01
76 97 0.99
ACGTcount: A:0.25, C:0.21, G:0.21, T:0.33
Consensus pattern (76 bp):
CATCTGTAAGTCCTACAGTGCATGATGTTTCCAAAAAGCCTTCGGGAGCTTTTTGATGTTTTCAA
AACCTTAGAGT
Found at i:2315444 original size:112 final size:112
Alignment explanation
Indices: 2315168--2315937 Score: 761
Period size: 112 Copynumber: 6.8 Consensus size: 112
2315158 TTTTTCTTAA
* * *
2315168 AACATTTCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAATAGGAAGTTCATAAT
1 AACATTTCCA-GAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
* * * *
2315233 GAGAAGAACTTGTTTAACCTTTTGTTCGAATCCATCACTTGATGGATC
65 GAGAAGAACTTGTTCAACTTTTTGCTCGAATTCATCACTTGATGGATC
* * * *
2315281 AACATTTTCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAATGAAGAAGAAGCTCATAAT
1 AACATTTCCA-GAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
* *
2315346 GAGAAGAACTTGTTCAACTTTTTTCTTGAATTCATCA-TTCGATGGATC
65 GAGAAGAACTTGTTCAACTTTTTGCTCGAATTCATCACTT-GATGGATC
* *
2315394 AACATTTCCAGAAGAGTTCATAATGAGAATAACTCATCTAAAGAAGGAAGAAGAAGTTCATAATG
1 AACATTTCCAGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATG
* * *
2315459 AGAAGAACTTGTTTAACCTTTTGCTCGAATTCATCACTTGATTGATC
66 AGAAGAACTTGTTCAACTTTTTGCTCGAATTCATCACTTGATGGATC
* * *
2315506 AACATTTCCAGAGAAAGTTCATAATGAGAAGAACTTATCTGAAG-AGGAAGAAGAAATTCATAAT
1 AACATTTCCAGA-AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
*
2315570 GAGAAGAA-TTCGTTCAA-TCTTTTGC-CTGAATTCATCACTTGATGGATT
65 GAGAAGAACTT-GTTCAACT-TTTTGCTC-GAATTCATCACTTGATGGATC
* * *
2315618 AACTTTTCCAGAGAAAGTTCATAATGAAAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
1 AACATTTCCAGA-AGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
** * ****** ** * * * *
2315683 GAGAAGAACTCATCTGAAGAAGGAAG-AAGAAGTTCAT-AATGAGAAGAACTC
65 GAGAAGAACTTGT-TCAA-CTTTTTGCTCGAA-TTCATCACT-TGATGGA-TC
* ***** *
2315734 ATCTGAAGAAGAAAGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAAGGAA-TTCA
1 AAC---A-TTTCCAGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAA-GAAGTTCA
* *
2315798 TAATGAGAAGAATTTGTTCAACTTTTTGCTCGATTTCATCA-TTCGATGGATC
61 TAATGAGAAGAACTTGTTCAACTTTTTGCTCGAATTCATCACTT-GATGGATC
** * * *
2315850 AGTATTGCCAGAAAGAGTTCATAATAAGAAAAACTCATCTGAAG-AGG-AGAAGAAGTTCATAAT
1 AACATTTCCAG-AAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
* * * *
2315913 GAGAATAATTTGTTCAGCCTTTTGC
65 GAGAAGAACTTGTTCAACTTTTTGC
2315938 ATGACTCTAT
Statistics
Matches: 545, Mismatches: 87, Indels: 52
0.80 0.13 0.08
Matches are distributed among these distances:
110 3 0.01
111 37 0.07
112 206 0.38
113 196 0.36
114 9 0.02
115 10 0.02
116 6 0.01
117 11 0.02
118 6 0.01
119 55 0.10
120 6 0.01
ACGTcount: A:0.39, C:0.14, G:0.20, T:0.28
Consensus pattern (112 bp):
AACATTTCCAGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATG
AGAAGAACTTGTTCAACTTTTTGCTCGAATTCATCACTTGATGGATC
Found at i:2315639 original size:225 final size:225
Alignment explanation
Indices: 2315168--2315937 Score: 792
Period size: 225 Copynumber: 3.4 Consensus size: 225
2315158 TTTTTCTTAA
* * * *
2315168 AACATTTCCAGGTAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAATAGGAAGTTCATAAT
1 AACATTTCCA-GAAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
* * *
2315233 GAGAAGAACTTGTTTAACCTTTTGTTCGAATCCATCACTTGATGGATCAACATTTTCAGGTAGAG
65 GAGAAGAACTTGTTTAACCTTTTGCTCGAATCCATCACTTGATGGATCAACATTTCCAGGTAAAG
* *
2315298 TTCATAATGAGAAGAACTCATCTGAAGAATGAAGAAGAAGCTCATAATGAGAAGAACTTGTTCAA
130 TTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAACTCATAATGAGAAGAACTTGTTCAA
* *
2315363 CTTTTTTCTTGAATTCATCATTCGATGGATC
195 CTTTTTGCCTGAATTCATCATTCGATGGATC
* * *
2315394 AACATTTCCAGAAGAGTTCATAATGAGAATAACTCATCTAAAGAAGGAAGAAGAAGTTCATAATG
1 AACATTTCCAGAAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATG
* *
2315459 AGAAGAACTTGTTTAACCTTTTGCTCGAATTCATCACTTGATTGATCAACATTTCCAGAG-AAAG
66 AGAAGAACTTGTTTAACCTTTTGCTCGAATCCATCACTTGATGGATCAACATTTCCAG-GTAAAG
* *
2315523 TTCATAATGAGAAGAACTTATCTGAAG-AGGAAGAAGAAATTCATAATGAGAAGAA-TTCGTTCA
130 TTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAACTCATAATGAGAAGAACTT-GTTCA
*
2315586 A-TCTTTTGCCTGAATTCATCACTT-GATGGATT
194 ACT-TTTTGCCTGAATTCATCA-TTCGATGGATC
* *
2315618 AACTTTTCCAGAGAAAGTTCATAATGAAAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
1 AACATTTCCAGA-AAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
** * ****** ** * * * * * **
2315683 GAGAAGAACTCATCTGAAGAAGGAAG-AAGAAGTTCAT-A-ATGA-GAAGAAC-TCATCTGAAGA
65 GAGAAGAACTTGT-TTAA-CCTTTTGCTCGAA-TCCATCACTTGATG--GATCAACATTTCCAG-
* * * *
2315743 AGAAAGAAGAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAAGGAATTCATAATGAGAAG
124 -G---TAA-AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAACTCATAATGAGAAG
* *
2315808 AATTTGTTCAACTTTTTG-CTCGATTTCATCATTCGATGGATC
184 AACTTGTTCAACTTTTTGCCT-GAATTCATCATTCGATGGATC
** * * *
2315850 AGTATTGCCAGAAAGAGTTCATAATAAGAAAAACTCATCTGAAG-AGG-AGAAGAAGTTCATAAT
1 AACATTTCCAGAAA-AGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAAT
* * * *
2315913 GAGAATAATTTGTTCAGCCTTTTGC
65 GAGAAGAACTTGTTTAACCTTTTGC
2315938 ATGACTCTAT
Statistics
Matches: 457, Mismatches: 64, Indels: 43
0.81 0.11 0.08
Matches are distributed among these distances:
223 3 0.01
224 65 0.14
225 203 0.44
226 23 0.05
227 6 0.01
228 1 0.00
229 2 0.00
230 27 0.06
231 37 0.08
232 87 0.19
233 3 0.01
ACGTcount: A:0.39, C:0.14, G:0.20, T:0.28
Consensus pattern (225 bp):
AACATTTCCAGAAAAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATG
AGAAGAACTTGTTTAACCTTTTGCTCGAATCCATCACTTGATGGATCAACATTTCCAGGTAAAGT
TCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAACTCATAATGAGAAGAACTTGTTCAAC
TTTTTGCCTGAATTCATCATTCGATGGATC
Found at i:2315690 original size:40 final size:40
Alignment explanation
Indices: 2315632--2315809 Score: 306
Period size: 40 Copynumber: 4.5 Consensus size: 40
2315622 TTTCCAGAGA
* *
2315632 AAGTTCATAATGAAAAGAACTCATCTGAAGAAGGAAGAAG
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAAG
*
2315672 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAG
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAAG
2315712 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAAG
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAAG
2315752 -AGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAAGG
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAA-G
2315792 AA-TTCATAATGAGAAGAA
1 AAGTTCATAATGAGAAGAA
2315810 TTTGTTCAAC
Statistics
Matches: 134, Mismatches: 2, Indels: 4
0.96 0.01 0.03
Matches are distributed among these distances:
39 38 0.28
40 95 0.71
41 1 0.01
ACGTcount: A:0.49, C:0.10, G:0.23, T:0.18
Consensus pattern (40 bp):
AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAAG
Found at i:2315798 original size:79 final size:80
Alignment explanation
Indices: 2315632--2315809 Score: 306
Period size: 79 Copynumber: 2.2 Consensus size: 80
2315622 TTTCCAGAGA
* *
2315632 AAGTTCATAATGAAAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAAGAACTCATC
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAAGAAGTTCATAATGAGAAGAACTCATC
*
2315697 TGAAGAAGGAAGAAG
66 TGAAGAAGAAAGAAG
2315712 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAAG-AGTTCATAATGAGAAGAACTCATC
1 AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAAGAAGTTCATAATGAGAAGAACTCATC
2315776 TGAAGAAGAAAGAAGG
66 TGAAGAAGAAAGAA-G
2315792 AA-TTCATAATGAGAAGAA
1 AAGTTCATAATGAGAAGAA
2315810 TTTGTTCAAC
Statistics
Matches: 94, Mismatches: 3, Indels: 3
0.94 0.03 0.03
Matches are distributed among these distances:
79 53 0.56
80 41 0.44
ACGTcount: A:0.49, C:0.10, G:0.23, T:0.18
Consensus pattern (80 bp):
AAGTTCATAATGAGAAGAACTCATCTGAAGAAGAAAGAAGAAGTTCATAATGAGAAGAACTCATC
TGAAGAAGAAAGAAG
Found at i:2316276 original size:3 final size:3
Alignment explanation
Indices: 2316260--2316327 Score: 79
Period size: 3 Copynumber: 23.0 Consensus size: 3
2316250 TGTCCCAGTT
*
2316260 TTA TT- TTA -TA TTA TTA TTA TTA TT- TTA TTA TTTA TTA TATA TTT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA -TTA TTA T-TA TTA
*
2316304 TTA TTA TTA ATA TTA TTA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA
2316328 CAAACAGGCC
Statistics
Matches: 56, Mismatches: 4, Indels: 10
0.80 0.06 0.14
Matches are distributed among these distances:
2 6 0.11
3 44 0.79
4 6 0.11
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TTA
Found at i:2316295 original size:31 final size:32
Alignment explanation
Indices: 2316259--2316327 Score: 97
Period size: 31 Copynumber: 2.2 Consensus size: 32
2316249 TTGTCCCAGT
* *
2316259 TTTATTTTATATTATTATTATT-ATTTTATTA
1 TTTATTATATATTATTATTATTAATATTATTA
*
2316290 TTTATTATATATTTTTATTATTAATATTATTA
1 TTTATTATATATTATTATTATTAATATTATTA
2316322 -TTATTA
1 TTTATTA
2316328 CAAACAGGCC
Statistics
Matches: 34, Mismatches: 3, Indels: 2
0.87 0.08 0.05
Matches are distributed among these distances:
31 26 0.76
32 8 0.24
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (32 bp):
TTTATTATATATTATTATTATTAATATTATTA
Found at i:2316848 original size:16 final size:16
Alignment explanation
Indices: 2316827--2316861 Score: 54
Period size: 16 Copynumber: 2.2 Consensus size: 16
2316817 CAACGAAAAA
2316827 AGAAAA-AAAATAATAG
1 AGAAAAGAAAA-AATAG
2316843 AGAAAAGAAAAAATAG
1 AGAAAAGAAAAAATAG
2316859 AGA
1 AGA
2316862 CCAACTCACA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
16 14 0.78
17 4 0.22
ACGTcount: A:0.74, C:0.00, G:0.17, T:0.09
Consensus pattern (16 bp):
AGAAAAGAAAAAATAG
Found at i:2318635 original size:23 final size:23
Alignment explanation
Indices: 2318603--2318647 Score: 65
Period size: 23 Copynumber: 2.0 Consensus size: 23
2318593 AGTTTTTTCT
2318603 CTCTCGTTTTCTC-TTATTTTTA
1 CTCTCGTTTTCTCATTATTTTTA
*
2318625 CTCTCGATTTTCTCATTTTTTTT
1 CTCTCG-TTTTCTCATTATTTTT
2318648 CGTGATTGCT
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
22 6 0.30
23 7 0.35
24 7 0.35
ACGTcount: A:0.09, C:0.22, G:0.04, T:0.64
Consensus pattern (23 bp):
CTCTCGTTTTCTCATTATTTTTA
Found at i:2318646 original size:24 final size:21
Alignment explanation
Indices: 2318595--2318648 Score: 63
Period size: 23 Copynumber: 2.4 Consensus size: 21
2318585 TGCTTTCTAG
*
2318595 TTTTTTCTCTCTCGTTTTCTC
1 TTTTTTTTCTCTCGTTTTCTC
*
2318616 TTATTTTTACTCTCGATTTTCTC
1 TT-TTTTTTCTCTCG-TTTTCTC
2318639 ATTTTTTTTC
1 -TTTTTTTTC
2318649 GTGATTGCTA
Statistics
Matches: 27, Mismatches: 3, Indels: 4
0.79 0.09 0.12
Matches are distributed among these distances:
21 2 0.07
22 10 0.37
23 13 0.48
24 2 0.07
ACGTcount: A:0.07, C:0.22, G:0.04, T:0.67
Consensus pattern (21 bp):
TTTTTTTTCTCTCGTTTTCTC
Found at i:2320556 original size:14 final size:16
Alignment explanation
Indices: 2320525--2320554 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
2320515 TTTTTTTATA
2320525 AATATAATATTTTTTT
1 AATATAATATTTTTTT
2320541 AATAT-ATATTTTTT
1 AATATAATATTTTTT
2320555 AAAATTCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 9 0.64
16 5 0.36
ACGTcount: A:0.37, C:0.00, G:0.00, T:0.63
Consensus pattern (16 bp):
AATATAATATTTTTTT
Found at i:2321460 original size:32 final size:32
Alignment explanation
Indices: 2321412--2321476 Score: 103
Period size: 32 Copynumber: 2.0 Consensus size: 32
2321402 GTTTTGGCAC
*
2321412 TCTTTTCTACTTGTAGGACTAACACATTGGTG
1 TCTTTTCTACTCGTAGGACTAACACATTGGTG
* *
2321444 TCTTTTCTCCTCGTAGGTCTAACACATTGGTG
1 TCTTTTCTACTCGTAGGACTAACACATTGGTG
2321476 T
1 T
2321477 TGGATATGAG
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
32 30 1.00
ACGTcount: A:0.18, C:0.22, G:0.18, T:0.42
Consensus pattern (32 bp):
TCTTTTCTACTCGTAGGACTAACACATTGGTG
Found at i:2324883 original size:43 final size:43
Alignment explanation
Indices: 2324835--2325192 Score: 309
Period size: 43 Copynumber: 8.4 Consensus size: 43
2324825 TTGGTTCGTG
* *
2324835 TCAATCTCACTTTTTACCTTTATAACTGAAACTTCTAATTTTT
1 TCAATCTCACTTTTTACCTTTATAATTGAAACCTCTAATTTTT
* * * *
2324878 TCAATCTCACTTTCTACATTTATAATT-AACGCCCCTAATTTTT
1 TCAATCTCACTTTTTACCTTTATAATTGAA-ACCTCTAATTTTT
* *
2324921 TTAATCTCACTTTTTACCTTTATAATT-AAAACTCTTAAATTTTT
1 TCAATCTCACTTTTTACCTTTATAATTGAAACCTC-T-AATTTTT
* * * *
2324965 T-AATTTTACTTTTTACTTTTATAATTG-AAGCTCCTAATTTTT
1 TCAATCTCACTTTTTACCTTTATAATTGAAACCT-CTAATTTTT
* * * * * * * *
2325007 TCAATTTCGCATTTTACTTTTATAATTCAGACCCCCAATTTTT
1 TCAATCTCACTTTTTACCTTTATAATTGAAACCTCTAATTTTT
* * *
2325050 TCAATCAT-ACTTTTAACCTTTATAATTGAGGA-CTCTAATTATT
1 TCAATC-TCACTTTTTACCTTTATAATTGA-AACCTCTAATTTTT
* * * ** *
2325093 TC-ATCTAACTTTATACATTTATAATTGAGGCCTCTAACTTTT
1 TCAATCTCACTTTTTACCTTTATAATTGAAACCTCTAATTTTT
**
2325135 TCAATCTCACTTTTTACCTTTATAATTGATGCCTCTAA-TTTT
1 TCAATCTCACTTTTTACCTTTATAATTGAAACCTCTAATTTTT
**
2325177 TCAATCAAACTTTTTA
1 TCAATCTCACTTTTTA
2325193 TAATTTAAGC
Statistics
Matches: 258, Mismatches: 45, Indels: 25
0.79 0.14 0.08
Matches are distributed among these distances:
41 2 0.01
42 62 0.24
43 180 0.70
44 14 0.05
ACGTcount: A:0.28, C:0.19, G:0.04, T:0.48
Consensus pattern (43 bp):
TCAATCTCACTTTTTACCTTTATAATTGAAACCTCTAATTTTT
Found at i:2325008 original size:129 final size:127
Alignment explanation
Indices: 2324837--2325190 Score: 360
Period size: 129 Copynumber: 2.8 Consensus size: 127
2324827 GGTTCGTGTC
* * * * *
2324837 AATCTCACTTTTTACCTTTATAACTGAAACTTCTAATTTTTTCAATCTCACTTTCTACATTTATA
1 AATCTAACTTTTTACATTTATAATTGAAGCTCCTAATTTTTTCAATCTCACTTT-TACATTTATA
* * *
2324902 ATTAACGCCCCTAATTTTTTTAATC-TCACTTTTTACCTTTATAATT-AAAACTCTTAAATTTTT
65 ATTAACGCCCCTAATTTTTTCAATCAT-ACTTTTAACCTTTATAATTGAAAACTC-T-AATTATT
2324965 T
127 T
* * * * * *
2324966 AATTTTACTTTTTACTTTTATAATTGAAGCTCCTAATTTTTTCAATTTCGCATTTTACTTTTATA
1 AATCTAACTTTTTACATTTATAATTGAAGCTCCTAATTTTTTCAATCTCAC-TTTTACATTTATA
**
2325031 ATTCAGAC-CCCC-AATTTTTTCAATCATACTTTTAACCTTTATAATTGAGGACTCTAATTATTT
65 ATT-A-ACGCCCCTAATTTTTTCAATCATACTTTTAACCTTTATAATTGAAAACTCTAATTATTT
* * * * *
2325094 CATCTAACTTTATACATTTATAATTGAGGC-CTCTAACTTTTTCAATCTCACTTTTTACCTTTAT
1 AATCTAACTTTTTACATTTATAATTGAAGCTC-CTAATTTTTTCAATCTCAC-TTTTACATTTAT
* * * *
2325158 AATTGATGCCTCTAA-TTTTTCAATCAAACTTTT
64 AATTAACGCCCCTAATTTTTTCAATCATACTTTT
2325191 TATAATTTAA
Statistics
Matches: 188, Mismatches: 29, Indels: 18
0.80 0.12 0.08
Matches are distributed among these distances:
126 1 0.01
127 21 0.11
128 64 0.34
129 86 0.46
130 14 0.07
131 2 0.01
ACGTcount: A:0.29, C:0.19, G:0.04, T:0.48
Consensus pattern (127 bp):
AATCTAACTTTTTACATTTATAATTGAAGCTCCTAATTTTTTCAATCTCACTTTTACATTTATAA
TTAACGCCCCTAATTTTTTCAATCATACTTTTAACCTTTATAATTGAAAACTCTAATTATTT
Found at i:2333013 original size:28 final size:29
Alignment explanation
Indices: 2332948--2333013 Score: 89
Period size: 28 Copynumber: 2.2 Consensus size: 29
2332938 CAAAAGGAAG
*
2332948 AAGAAGTAGTTGACGCAGGATCCCCGAGAGA
1 AAGAAG-AGTAGACGCAGGAT-CCCGAGAGA
*
2332979 AAGAAGAGTAGACGCAGGAT-CCTAGAGA
1 AAGAAGAGTAGACGCAGGATCCCGAGAGA
2333007 AAGAAGA
1 AAGAAGA
2333014 AAAATGACTC
Statistics
Matches: 33, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
28 14 0.42
30 13 0.39
31 6 0.18
ACGTcount: A:0.42, C:0.15, G:0.32, T:0.11
Consensus pattern (29 bp):
AAGAAGAGTAGACGCAGGATCCCGAGAGA
Found at i:2338568 original size:19 final size:19
Alignment explanation
Indices: 2338526--2338573 Score: 55
Period size: 19 Copynumber: 2.5 Consensus size: 19
2338516 GGTATAAAAT
2338526 AGCTAAA-ATATTGTAGTA
1 AGCTAAATATATTGTAGTA
*
2338544 AACTAAATATATTGTAG-A
1 AGCTAAATATATTGTAGTA
2338562 GAGCTAAGATAT
1 -AGCTAA-ATAT
2338574 TCACTTGGGT
Statistics
Matches: 25, Mismatches: 2, Indels: 4
0.81 0.06 0.13
Matches are distributed among these distances:
18 7 0.28
19 14 0.56
20 4 0.16
ACGTcount: A:0.46, C:0.06, G:0.17, T:0.31
Consensus pattern (19 bp):
AGCTAAATATATTGTAGTA
Found at i:2350649 original size:31 final size:31
Alignment explanation
Indices: 2350607--2350681 Score: 123
Period size: 31 Copynumber: 2.4 Consensus size: 31
2350597 TCAAGAAGCA
* *
2350607 TAAGATATGGTCTCTTTCGTTTTTATTTAAT
1 TAAGATGTGGTCACTTTCGTTTTTATTTAAT
2350638 TAAGATGTGGTCACTTTCGTTTTTATTTAAT
1 TAAGATGTGGTCACTTTCGTTTTTATTTAAT
*
2350669 TAAGACGTGGTCA
1 TAAGATGTGGTCA
2350682 TCATGAGTTA
Statistics
Matches: 41, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
31 41 1.00
ACGTcount: A:0.24, C:0.11, G:0.17, T:0.48
Consensus pattern (31 bp):
TAAGATGTGGTCACTTTCGTTTTTATTTAAT
Found at i:2350841 original size:31 final size:31
Alignment explanation
Indices: 2350783--2350844 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 31
2350773 TCAATTTAGT
* * *
2350783 TATATTTTTAAATAAATTTTAACATAAAATA
1 TATATTTTTAAATAAATATAAAAATAAAATA
2350814 TATATTTTTAAATGAAA-ATAAAAATAAAATA
1 TATATTTTTAAAT-AAATATAAAAATAAAATA
2350845 CTTTTAAATA
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
31 24 0.89
32 3 0.11
ACGTcount: A:0.56, C:0.02, G:0.02, T:0.40
Consensus pattern (31 bp):
TATATTTTTAAATAAATATAAAAATAAAATA
Found at i:2351859 original size:19 final size:17
Alignment explanation
Indices: 2351835--2351869 Score: 52
Period size: 19 Copynumber: 1.9 Consensus size: 17
2351825 GTCAGGCTAA
2351835 TATAAAACTTTTAATTTAT
1 TATAAAA-TTTT-ATTTAT
2351854 TATAAAATTTTATTTA
1 TATAAAATTTTATTTA
2351870 CACTATTGAT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 5 0.31
18 4 0.25
19 7 0.44
ACGTcount: A:0.43, C:0.03, G:0.00, T:0.54
Consensus pattern (17 bp):
TATAAAATTTTATTTAT
Found at i:2352946 original size:18 final size:17
Alignment explanation
Indices: 2352893--2352946 Score: 54
Period size: 18 Copynumber: 3.1 Consensus size: 17
2352883 TTGTTGAAGG
* *
2352893 ATAACTTAAATAAATTA
1 ATAATTTAAACAAATTA
* *
2352910 ATAATTAAAACTTAATTA
1 ATAATTTAAAC-AAATTA
2352928 ATAATTTAAACAAACTTA
1 ATAATTTAAACAAA-TTA
2352946 A
1 A
2352947 ACATTATATT
Statistics
Matches: 29, Mismatches: 6, Indels: 3
0.76 0.16 0.08
Matches are distributed among these distances:
17 10 0.34
18 19 0.66
ACGTcount: A:0.57, C:0.07, G:0.00, T:0.35
Consensus pattern (17 bp):
ATAATTTAAACAAATTA
Found at i:2356092 original size:65 final size:64
Alignment explanation
Indices: 2355966--2356174 Score: 230
Period size: 65 Copynumber: 3.2 Consensus size: 64
2355956 TGCACTAAGA
* *
2355966 GTGCATCGATGCATGAAGTGCATTCGATGTTTCA--AAATAGCCTGAGTGCATCGATGCATGGAT
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCATTAAA-A-CCTGAGTGCATCGATGCATGGAT
2356029 T
64 T
* **
2356030 GTGCATCGATGCATCAAATGCATTTGATGTTTTCATTAAAACCTGAGTGCATCGATGCATGGAGA
1 GTGCATCGATGCATCAAATGCATTCGATG-TTTCATTAAAACCTGAGTGCATCGATGCATGGATT
* ** *
2356095 GTGCATCGATGCAT-AAACTGCATTCGATG-TTCAATTTATTCATTG-GTGCATCGATGCATGGA
1 GTGCATCGATGCATCAAA-TGCATTCGATGTTTC-ATTAAAAC-CTGAGTGCATCGATGCATGGA
2356157 TT
63 TT
*
2356159 GGTGCATCGGTGCATC
1 -GTGCATCGATGCATC
2356175 CCTTTGAAAA
Statistics
Matches: 124, Mismatches: 13, Indels: 14
0.82 0.09 0.09
Matches are distributed among these distances:
63 3 0.02
64 51 0.41
65 66 0.53
66 1 0.01
67 3 0.02
ACGTcount: A:0.26, C:0.18, G:0.25, T:0.32
Consensus pattern (64 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTCATTAAAACCTGAGTGCATCGATGCATGGATT
Found at i:2356161 original size:20 final size:20
Alignment explanation
Indices: 2356136--2356173 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
2356126 CAATTTATTC
2356136 ATTGGTGCATCGATGCATGG
1 ATTGGTGCATCGATGCATGG
*
2356156 ATTGGTGCATCGGTGCAT
1 ATTGGTGCATCGATGCAT
2356174 CCCTTTGAAA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.18, C:0.16, G:0.34, T:0.32
Consensus pattern (20 bp):
ATTGGTGCATCGATGCATGG
Found at i:2359334 original size:32 final size:32
Alignment explanation
Indices: 2359272--2359347 Score: 100
Period size: 32 Copynumber: 2.4 Consensus size: 32
2359262 ATTATAGAAG
*
2359272 TTATATTCAAATAAATATTATATATATAAATA
1 TTATGTTCAAATAAATATTATATATATAAATA
* * *
2359304 TTATGTTCGAATAAATGTTAT-TTTATTAAATA
1 TTATGTTCAAATAAATATTATATATA-TAAATA
2359336 TTATGTTCAAAT
1 TTATGTTCAAAT
2359348 GTTAACATAA
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
31 3 0.08
32 35 0.92
ACGTcount: A:0.43, C:0.04, G:0.05, T:0.47
Consensus pattern (32 bp):
TTATGTTCAAATAAATATTATATATATAAATA
Found at i:2360359 original size:23 final size:22
Alignment explanation
Indices: 2360326--2360387 Score: 76
Period size: 19 Copynumber: 2.9 Consensus size: 22
2360316 CATCGATGCA
2360326 TAAGGAGTGCATCGATGCACACG
1 TAAGG-GTGCATCGATGCACACG
2360349 TTAAGGGTGCATCGAT--ACACG
1 -TAAGGGTGCATCGATGCACACG
*
2360370 T-AGGATGCATCGATGCAC
1 TAAGGGTGCATCGATGCAC
2360388 TTCAAGGGGA
Statistics
Matches: 35, Mismatches: 1, Indels: 7
0.81 0.02 0.16
Matches are distributed among these distances:
19 12 0.34
20 1 0.03
21 7 0.20
23 10 0.29
24 5 0.14
ACGTcount: A:0.29, C:0.21, G:0.29, T:0.21
Consensus pattern (22 bp):
TAAGGGTGCATCGATGCACACG
Found at i:2363472 original size:27 final size:27
Alignment explanation
Indices: 2363442--2363495 Score: 65
Period size: 27 Copynumber: 2.0 Consensus size: 27
2363432 ATAAGTGACA
2363442 GTAGATAAATG-TATAAAGGAAAAAAAG
1 GTAGATAAA-GATATAAAGGAAAAAAAG
* * *
2363469 GTAGTTGAAGATATAAAGGAAAGAAAG
1 GTAGATAAAGATATAAAGGAAAAAAAG
2363496 ATTAAGAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
26 1 0.04
27 22 0.96
ACGTcount: A:0.56, C:0.00, G:0.26, T:0.19
Consensus pattern (27 bp):
GTAGATAAAGATATAAAGGAAAAAAAG
Found at i:2364465 original size:24 final size:24
Alignment explanation
Indices: 2364437--2364500 Score: 75
Period size: 24 Copynumber: 2.8 Consensus size: 24
2364427 CATCGATGCA
*
2364437 TAAGGAGTGCATCGATGCACACGT
1 TAAGGAGTGCATCGATGCACACGG
2364461 TAAGG-GATGCATCGAT--ACACGG
1 TAAGGAG-TGCATCGATGCACACGG
2364483 T-AGGA-TGCATCGATGCAC
1 TAAGGAGTGCATCGATGCAC
2364501 TTCAAGGGGA
Statistics
Matches: 35, Mismatches: 1, Indels: 10
0.76 0.02 0.22
Matches are distributed among these distances:
20 9 0.26
21 3 0.09
22 8 0.23
23 1 0.03
24 14 0.40
ACGTcount: A:0.30, C:0.20, G:0.30, T:0.20
Consensus pattern (24 bp):
TAAGGAGTGCATCGATGCACACGG
Found at i:2368408 original size:27 final size:26
Alignment explanation
Indices: 2368367--2368418 Score: 68
Period size: 27 Copynumber: 2.0 Consensus size: 26
2368357 TCGGTAAACT
*
2368367 TTTATTGCAGCAATAATACATATGTCA
1 TTTATTGCAGAAATAATACAT-TGTCA
* *
2368394 TTTATTGTAGAAATAATGCATTGTC
1 TTTATTGCAGAAATAATACATTGTC
2368419 CCAAATAGTG
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
26 4 0.18
27 18 0.82
ACGTcount: A:0.35, C:0.12, G:0.13, T:0.40
Consensus pattern (26 bp):
TTTATTGCAGAAATAATACATTGTCA
Found at i:2370504 original size:22 final size:22
Alignment explanation
Indices: 2370476--2370521 Score: 83
Period size: 22 Copynumber: 2.1 Consensus size: 22
2370466 GGGTTTTTTA
2370476 GACAAACGCCGCAATAGGTATT
1 GACAAACGCCGCAATAGGTATT
*
2370498 GACAAACGCCGCAATAGGTGTT
1 GACAAACGCCGCAATAGGTATT
2370520 GA
1 GA
2370522 TATTTAGCGG
Statistics
Matches: 23, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.35, C:0.22, G:0.26, T:0.17
Consensus pattern (22 bp):
GACAAACGCCGCAATAGGTATT
Found at i:2370540 original size:65 final size:65
Alignment explanation
Indices: 2370436--2370564 Score: 215
Period size: 65 Copynumber: 2.0 Consensus size: 65
2370426 TTTTGTTAAA
*
2370436 AAACGCCGCAATAAGTGTTGATATTTAGCAGGGTTTTTTAGACAAACGCCGCAATAGGTATTGAC
1 AAACGCCGCAATAAGTGTTGATATTTAGCAGGATTTTTTAGACAAACGCCGCAATAGGTATTGAC
* *
2370501 AAACGCCGCAATAGGTGTTGATATTTAGC-GGCATTTTTTAGACAAACGCCGCAATAGGTGTTGA
1 AAACGCCGCAATAAGTGTTGATATTTAGCAGG-ATTTTTTAGACAAACGCCGCAATAGGTATTGA
2370565 TATTTAGCAG
Statistics
Matches: 60, Mismatches: 3, Indels: 2
0.92 0.05 0.03
Matches are distributed among these distances:
64 2 0.03
65 58 0.97
ACGTcount: A:0.31, C:0.17, G:0.24, T:0.28
Consensus pattern (65 bp):
AAACGCCGCAATAAGTGTTGATATTTAGCAGGATTTTTTAGACAAACGCCGCAATAGGTATTGAC
Found at i:2370559 original size:43 final size:42
Alignment explanation
Indices: 2370498--2370618 Score: 154
Period size: 43 Copynumber: 2.8 Consensus size: 42
2370488 AATAGGTATT
2370498 GACAAACGCCGCAATAGGTGTTGATATTTAGCGGCATTTTTTA
1 GACAAACGCCGCAATAGGTGTTGATATTTAGCGGC-TTTTTTA
*
2370541 GACAAACGCCGCAATAGGTGTTGATATTTAGCAGCTTTTTTA
1 GACAAACGCCGCAATAGGTGTTGATATTTAGCGGCTTTTTTA
* * * * *
2370583 -TCTAAAACGCTGCAGTAGGTGTTGATGTTTTGCGGC
1 GAC--AAACGCCGCAATAGGTGTTGATATTTAGCGGC
2370619 GTTGTTGCGA
Statistics
Matches: 69, Mismatches: 7, Indels: 4
0.86 0.09 0.05
Matches are distributed among these distances:
41 1 0.01
42 7 0.10
43 61 0.88
ACGTcount: A:0.26, C:0.17, G:0.25, T:0.33
Consensus pattern (42 bp):
GACAAACGCCGCAATAGGTGTTGATATTTAGCGGCTTTTTTA
Found at i:2371084 original size:21 final size:21
Alignment explanation
Indices: 2371037--2371085 Score: 62
Period size: 21 Copynumber: 2.3 Consensus size: 21
2371027 CTGCTGATAT
2371037 GTTGCTTCTCTCTGTGCTGCA
1 GTTGCTTCTCTCTGTGCTGCA
* * * *
2371058 GCTGCTTCTCTTTGTGTTGCC
1 GTTGCTTCTCTCTGTGCTGCA
2371079 GTTGCTT
1 GTTGCTT
2371086 TTTTCTCTGT
Statistics
Matches: 23, Mismatches: 5, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
21 23 1.00
ACGTcount: A:0.02, C:0.27, G:0.24, T:0.47
Consensus pattern (21 bp):
GTTGCTTCTCTCTGTGCTGCA
Found at i:2371120 original size:21 final size:21
Alignment explanation
Indices: 2371096--2371140 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
2371086 TTTTCTCTGT
*
2371096 TTCTGCTGCTGCTCTGGCTGC
1 TTCTGCTGCTGCTCTCGCTGC
* *
2371117 TTCTGTTGCTGCTCTCTCTGC
1 TTCTGCTGCTGCTCTCGCTGC
2371138 TTC
1 TTC
2371141 CCTTGCTTCA
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.00, C:0.33, G:0.22, T:0.44
Consensus pattern (21 bp):
TTCTGCTGCTGCTCTCGCTGC
Found at i:2371146 original size:21 final size:21
Alignment explanation
Indices: 2371102--2371147 Score: 56
Period size: 21 Copynumber: 2.2 Consensus size: 21
2371092 CTGTTTCTGC
* **
2371102 TGCTGCTCTGGCTGCTTCTGT
1 TGCTGCTCTCGCTGCTTCCCT
*
2371123 TGCTGCTCTCTCTGCTTCCCT
1 TGCTGCTCTCGCTGCTTCCCT
2371144 TGCT
1 TGCT
2371148 TCATTTTTCG
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
21 21 1.00
ACGTcount: A:0.00, C:0.35, G:0.22, T:0.43
Consensus pattern (21 bp):
TGCTGCTCTCGCTGCTTCCCT
Found at i:2379382 original size:41 final size:41
Alignment explanation
Indices: 2379337--2379465 Score: 107
Period size: 41 Copynumber: 3.1 Consensus size: 41
2379327 GTTTTTCTAT
*
2379337 AAACGCCGCTAAAGTACTACTCTATTACGACGTTTTTTGAA
1 AAACGCCGCTAAAGTACTACTCTATTACGGCGTTTTTTGAA
* * * * * * *
2379378 AAACGCCACTATAAATA-AACCCTATTACGGCATTTTATAAA
1 AAACGCCGCTA-AAGTACTACTCTATTACGGCGTTTTTTGAA
** * * * *
2379419 AAATTACCGCTAAAGTACTATTATATTGCGGCGTTTGTTGAA
1 AAA-CGCCGCTAAAGTACTACTCTATTACGGCGTTTTTTGAA
2379461 AAACG
1 AAACG
2379466 TCACTATAGA
Statistics
Matches: 62, Mismatches: 23, Indels: 6
0.68 0.25 0.07
Matches are distributed among these distances:
41 35 0.56
42 27 0.44
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.30
Consensus pattern (41 bp):
AAACGCCGCTAAAGTACTACTCTATTACGGCGTTTTTTGAA
Found at i:2379454 original size:83 final size:84
Alignment explanation
Indices: 2379342--2379506 Score: 233
Period size: 83 Copynumber: 2.0 Consensus size: 84
2379332 TCTATAAACG
* *
2379342 CCGCTAAAGTACTACTCTATTACGACGTTTTTTGAAAAACGCCACTATAAATAAACCCTATTACG
1 CCGCTAAAGTACTACTATATTACGACGTTTGTTGAAAAACGCCACTATAAATAAACCCTATTACG
*
2379407 GCATTT-TATAAAAAATTA
66 ACATTTGTATAAAAAATTA
* * * * * *
2379425 CCGCTAAAGTACTATTATATTGCGGCGTTTGTTGAAAAACGTCACTATAGATTAACCCTATTACG
1 CCGCTAAAGTACTACTATATTACGACGTTTGTTGAAAAACGCCACTATAAATAAACCCTATTACG
*
2379490 ACGTTTGTATAAAAAAT
66 ACATTTGTATAAAAAAT
2379507 AGTGTAAATG
Statistics
Matches: 71, Mismatches: 10, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
83 61 0.86
84 10 0.14
ACGTcount: A:0.36, C:0.19, G:0.13, T:0.32
Consensus pattern (84 bp):
CCGCTAAAGTACTACTATATTACGACGTTTGTTGAAAAACGCCACTATAAATAAACCCTATTACG
ACATTTGTATAAAAAATTA
Found at i:2379692 original size:41 final size:41
Alignment explanation
Indices: 2379631--2379970 Score: 369
Period size: 41 Copynumber: 8.2 Consensus size: 41
2379621 GTAAAATTGT
*
2379631 GGCGTTTGTAAATAAAAACGCCACTAAAGTACGAGTCTATAAC
1 GGCGTTTGT--ATAAAAACGCCACTAAAGTACGAGTCTATAGC
*
2379674 GGCGTTTGTATAAAAACGCCACTAAAGTACTAGTCTATAGC
1 GGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTATAGC
* *** * *
2379715 GGCGTTTATATAAAAACGATGCTAAAGTATGAGTCTTTAGC
1 GGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTATAGC
* * *
2379756 GGCATTT-TCATTCAAAACGCCACTAAAGTACGAGTTTATAGC
1 GGCGTTTGT-A-TAAAAACGCCACTAAAGTACGAGTCTATAGC
* * * * * *
2379798 GGCGTTTGGATTCAAAACGCTACTAAAGTATGAGTATATAGT
1 GGCGTTTGTA-TAAAAACGCCACTAAAGTACGAGTCTATAGC
* * *
2379840 GGCGTTTGTATAGAAACGCCACTAAAGTACTAGTATATAGC
1 GGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTATAGC
* * *
2379881 GGCGTTTGTATAAAAATGCCACTAAAGTACAATTCTATAGC
1 GGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTATAGC
* * *
2379922 AGCGTTTGTATAAAAAACGCCACTAAAGTACGTA-CCTATAAC
1 GGCGTTTGTAT-AAAAACGCCACTAAAGTACG-AGTCTATAGC
2379964 GGCGTTT
1 GGCGTTT
2379971 ATTGAAAAAA
Statistics
Matches: 251, Mismatches: 41, Indels: 11
0.83 0.14 0.04
Matches are distributed among these distances:
40 1 0.00
41 142 0.57
42 98 0.39
43 10 0.04
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (41 bp):
GGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTATAGC
Found at i:2379941 original size:166 final size:166
Alignment explanation
Indices: 2379645--2379953 Score: 422
Period size: 166 Copynumber: 1.9 Consensus size: 166
2379635 TTTGTAAATA
* *
2379645 AAAACGCCACTAAAGTACGAGTCTATAACGGCGTTTGTATAAAAACGCCACTAAAGTACTAGTCT
1 AAAACGCCACTAAAGTACGAGTATATAACGGCGTTTGTATAAAAACGCCACTAAAGTACTAGTAT
** ** * * **
2379710 ATAGCGGCGTTTATATAAAAACGATGCTAAAGTATGAGTCTTTAGCGGCATTTTCATTCAAAACG
66 ATAGCGGCGTTTATATAAAAACGACACTAAAGTACAAGTCTATAGCAGCATTTTCATAAAAAACG
2379775 CCACTAAAGTACGAGTTTATAGCGGCGTTTGGATTC
131 CCACTAAAGTACGAGTTTATAGCGGCGTTTGGATTC
* * ** *
2379811 AAAACGCTACTAAAGTATGAGTATATAGTGGCGTTTGTATAGAAACGCCACTAAAGTACTAGTAT
1 AAAACGCCACTAAAGTACGAGTATATAACGGCGTTTGTATAAAAACGCCACTAAAGTACTAGTAT
* * * * *
2379876 ATAGCGGCGTTTGTATAAAAATGCCACTAAAGTACAATTCTATAGCAGCGTTTGT-ATAAAAAAC
66 ATAGCGGCGTTTATATAAAAACGACACTAAAGTACAAGTCTATAGCAGCATTT-TCATAAAAAAC
2379940 GCCACTAAAGTACG
130 GCCACTAAAGTACG
2379954 TACCTATAAC
Statistics
Matches: 122, Mismatches: 20, Indels: 2
0.85 0.14 0.01
Matches are distributed among these distances:
166 121 0.99
167 1 0.01
ACGTcount: A:0.36, C:0.17, G:0.19, T:0.27
Consensus pattern (166 bp):
AAAACGCCACTAAAGTACGAGTATATAACGGCGTTTGTATAAAAACGCCACTAAAGTACTAGTAT
ATAGCGGCGTTTATATAAAAACGACACTAAAGTACAAGTCTATAGCAGCATTTTCATAAAAAACG
CCACTAAAGTACGAGTTTATAGCGGCGTTTGGATTC
Found at i:2379967 original size:83 final size:83
Alignment explanation
Indices: 2379631--2379970 Score: 375
Period size: 83 Copynumber: 4.1 Consensus size: 83
2379621 GTAAAATTGT
*
2379631 GGCGTTTGTAAATAAAAACGCCACTAAAGTACGAGTCTATAACGGCGTTTGTATAAAAACGCCAC
1 GGCGTTTGT--ATAAAAACGCCACTAAAGTACGAGTCTATAGCGGCGTTTGTATAAAAACGCCAC
2379696 TAAAGTAC-TAGTCTATAGC
64 TAAAGTACGTAGTCTATAGC
* *** * * * *
2379715 GGCGTTTATATAAAAACGATGCTAAAGTATGAGTCTTTAGCGGCATTT-TCATTCAAAACGCCAC
1 GGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTATAGCGGCGTTTGT-A-TAAAAACGCCAC
*
2379779 TAAAGTACG-AGTTTATAGC
64 TAAAGTACGTAGTCTATAGC
* * * * * * *
2379798 GGCGTTTGGATTCAAAACGCTACTAAAGTATGAGTATATAGTGGCGTTTGTATAGAAACGCCACT
1 GGCGTTTGTA-TAAAAACGCCACTAAAGTACGAGTCTATAGCGGCGTTTGTATAAAAACGCCACT
*
2379863 AAAGTAC-TAGTATATAGC
65 AAAGTACGTAGTCTATAGC
* * * *
2379881 GGCGTTTGTATAAAAATGCCACTAAAGTACAATTCTATAGCAGCGTTTGTATAAAAAACGCCACT
1 GGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTATAGCGGCGTTTGTAT-AAAAACGCCACT
* *
2379946 AAAGTACGTA-CCTATAAC
65 AAAGTACGTAGTCTATAGC
2379964 GGCGTTT
1 GGCGTTT
2379971 ATTGAAAAAA
Statistics
Matches: 212, Mismatches: 36, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
81 1 0.00
82 66 0.31
83 102 0.48
84 42 0.20
85 1 0.00
ACGTcount: A:0.35, C:0.17, G:0.20, T:0.28
Consensus pattern (83 bp):
GGCGTTTGTATAAAAACGCCACTAAAGTACGAGTCTATAGCGGCGTTTGTATAAAAACGCCACTA
AAGTACGTAGTCTATAGC
Found at i:2381428 original size:40 final size:41
Alignment explanation
Indices: 2381377--2381486 Score: 179
Period size: 41 Copynumber: 2.7 Consensus size: 41
2381367 GCGTTTATAC
2381377 AAAAAACGCCACTATTGATTACACTATTGTGGCGTTTGT-T
1 AAAAAACGCCACTATTGATTACACTATTGTGGCGTTTGTCT
2381417 AAAAAACGCCACTATTGATTAACACTATTGTGGCGTTTGTCT
1 AAAAAACGCCACTATTGATT-ACACTATTGTGGCGTTTGTCT
*
2381459 -AAAAACGCCACTATTTATTATCACTATT
1 AAAAAACGCCACTATTGATTA-CACTATT
2381487 ACGGCATTTT
Statistics
Matches: 66, Mismatches: 1, Indels: 5
0.92 0.01 0.07
Matches are distributed among these distances:
40 21 0.32
41 44 0.67
42 1 0.02
ACGTcount: A:0.33, C:0.19, G:0.14, T:0.35
Consensus pattern (41 bp):
AAAAAACGCCACTATTGATTACACTATTGTGGCGTTTGTCT
Found at i:2381568 original size:42 final size:40
Alignment explanation
Indices: 2381522--2381658 Score: 122
Period size: 42 Copynumber: 3.4 Consensus size: 40
2381512 TATATGTGTA
*
2381522 ATCTATTACGGCGTTTGTGGTATAAACGCCGCTAATTTATC
1 ATCTATTGCGGCGTTTGTGGTATAAACGCCGCTAATTTA-C
* * *
2381563 GATCTATTGTGGC--TTG-GCTA-AAACGCCACTATATGTTA-
1 -ATCTATTGCGGCGTTTGTGGTATAAACGCCGCTA-AT-TTAC
**
2381601 ATCTATTGTAGCGTTTGTGGTATAAACGCCGCTAATTTAC
1 ATCTATTGCGGCGTTTGTGGTATAAACGCCGCTAATTTAC
*
2381641 TACTCTATTTCGGCGTTT
1 -A-TCTATTGCGGCGTTT
2381659 CCGCTATATG
Statistics
Matches: 76, Mismatches: 10, Indels: 18
0.73 0.10 0.17
Matches are distributed among these distances:
37 11 0.14
38 10 0.13
39 11 0.14
40 11 0.14
41 11 0.14
42 22 0.29
ACGTcount: A:0.23, C:0.19, G:0.20, T:0.38
Consensus pattern (40 bp):
ATCTATTGCGGCGTTTGTGGTATAAACGCCGCTAATTTAC
Found at i:2385250 original size:13 final size:13
Alignment explanation
Indices: 2385232--2385256 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
2385222 TTGGTCAAGG
2385232 AATTTAGAAACAC
1 AATTTAGAAACAC
2385245 AATTTAGAAACA
1 AATTTAGAAACA
2385257 AGGTACTGCT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.56, C:0.12, G:0.08, T:0.24
Consensus pattern (13 bp):
AATTTAGAAACAC
Found at i:2390530 original size:39 final size:38
Alignment explanation
Indices: 2390485--2390596 Score: 129
Period size: 39 Copynumber: 2.9 Consensus size: 38
2390475 TTTAAAAAAC
2390485 AATTTAGAATGTTAATGTGAAATAATTTAAGAAAGTAAG
1 AATTTAGAATGTT-ATGTGAAATAATTTAAGAAAGTAAG
* *
2390524 AATTTAGAATGTTATGGGGATAA-AATTTAAGAAAGTAGG
1 AATTTAGAATGTTAT-GTGA-AATAATTTAAGAAAGTAAG
* *
2390563 AATTTAGAAGGTT-TGACTGAAATAATTTGAGAAA
1 AATTTAGAATGTTATG--TGAAATAATTTAAGAAA
2390597 TATAAATAAA
Statistics
Matches: 63, Mismatches: 5, Indels: 10
0.81 0.06 0.13
Matches are distributed among these distances:
37 1 0.02
38 5 0.08
39 55 0.87
40 2 0.03
ACGTcount: A:0.46, C:0.01, G:0.21, T:0.32
Consensus pattern (38 bp):
AATTTAGAATGTTATGTGAAATAATTTAAGAAAGTAAG
Found at i:2392154 original size:23 final size:23
Alignment explanation
Indices: 2392128--2392180 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
2392118 ATTGTACCTA
2392128 AGTGCCACGTAGAATTGCACCGG
1 AGTGCCACGTAGAATTGCACCGG
* *
2392151 AGTGCCGCGTAGAATTGCACCGT
1 AGTGCCACGTAGAATTGCACCGG
2392174 AGTGCCA
1 AGTGCCA
2392181 TATAATAATG
Statistics
Matches: 27, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.25, C:0.26, G:0.30, T:0.19
Consensus pattern (23 bp):
AGTGCCACGTAGAATTGCACCGG
Found at i:2392324 original size:103 final size:103
Alignment explanation
Indices: 2392199--2392413 Score: 412
Period size: 103 Copynumber: 2.1 Consensus size: 103
2392189 TGTCCATAAA
2392199 GACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCAGAC
1 GACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCAGAC
2392264 CTCACACATGTTCCAAAGAATACATATATGTCCCGAAT
66 CTCACACATGTTCCAAAGAATACATATATGTCCCGAAT
*
2392302 GACCACATATCATTCCTTAAGAATCATATGCATATGCCAAGGATCAAGTATGTGTCTCACCAGAC
1 GACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCAGAC
*
2392367 CTCACACATGTTCTAAAGAATACATATATGTCCCGAAT
66 CTCACACATGTTCCAAAGAATACATATATGTCCCGAAT
2392405 GACCACATA
1 GACCACATA
2392414 GACCCTCTAC
Statistics
Matches: 110, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
103 110 1.00
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.26
Consensus pattern (103 bp):
GACCACATATCATTCCTTAAGAATCATATACATATGCCAAGGATCAAGTATGTGTCTCACCAGAC
CTCACACATGTTCCAAAGAATACATATATGTCCCGAAT
Found at i:2392973 original size:64 final size:67
Alignment explanation
Indices: 2392862--2392989 Score: 192
Period size: 64 Copynumber: 2.0 Consensus size: 67
2392852 ATTTTCATCT
2392862 TTTAATGGAGGTATGCATCGATGCACTACACCATGCATCAATGCATAAATCCTATTCGATGTTTG
1 TTTAATGGAGGTATGCATCGATGCACTACACCATGCATCAATGCATAAATCCTATTCGATGTTTG
2392927 TA
66 TA
* * *
2392929 TTTAATGG-GG-ATGCATCGATGCACT-C-CTTATGCATCGATGCATAAATCCTATTTGATGTTT
1 TTTAATGGAGGTATGCATCGATGCACTACAC-CATGCATCAATGCATAAATCCTATTCGATGTTT
2392990 TCTTTTTAAA
Statistics
Matches: 57, Mismatches: 3, Indels: 5
0.88 0.05 0.08
Matches are distributed among these distances:
63 1 0.02
64 31 0.54
65 15 0.26
66 2 0.04
67 8 0.14
ACGTcount: A:0.27, C:0.19, G:0.19, T:0.35
Consensus pattern (67 bp):
TTTAATGGAGGTATGCATCGATGCACTACACCATGCATCAATGCATAAATCCTATTCGATGTTTG
TA
Found at i:2393010 original size:64 final size:63
Alignment explanation
Indices: 2392877--2393034 Score: 151
Period size: 64 Copynumber: 2.5 Consensus size: 63
2392867 TGGAGGTATG
* * * *
2392877 CATCGATGCACTACAC-CATGCATCAATGCATAAATCCTATTCGATGTTTGTATTTAATGGGGAT
1 CATCGATGCACT-C-CTTATGCATCGATGCATAAATCCTATTCGATGTTTCTATTTAAT-GGAAT
*
2392941 G
63 A
* * *
2392942 CATCGATGCACTCCTTATGCATCGATGCATAAATCCTATTTGATGTTTTCTTTTTAAAT-TAATA
1 CATCGATGCACTCCTTATGCATCGATGCATAAATCCTATTCGATG-TTTCTATTT-AATGGAATA
* *
2393006 CATCGATGCACT-GTATGTGCATCGATGCA
1 CATCGATGCACTCCT-TATGCATCGATGCA
2393035 CCTTAAACAA
Statistics
Matches: 79, Mismatches: 10, Indels: 9
0.81 0.10 0.09
Matches are distributed among these distances:
63 2 0.03
64 55 0.70
65 19 0.24
66 3 0.04
ACGTcount: A:0.28, C:0.20, G:0.16, T:0.35
Consensus pattern (63 bp):
CATCGATGCACTCCTTATGCATCGATGCATAAATCCTATTCGATGTTTCTATTTAATGGAATA
Found at i:2399133 original size:23 final size:22
Alignment explanation
Indices: 2399107--2399170 Score: 83
Period size: 23 Copynumber: 2.8 Consensus size: 22
2399097 CAGCTCATAT
2399107 AATTGCACCTAAGTGCCACGTAG
1 AATTGCACCT-AGTGCCACGTAG
* *
2399130 AATTGCACCGGAGTGCCGCGTAG
1 AATTGCACC-TAGTGCCACGTAG
2399153 AATTGCACCGTAGTGCCA
1 AATTGCACC-TAGTGCCA
2399171 TATAATAATG
Statistics
Matches: 36, Mismatches: 4, Indels: 2
0.86 0.10 0.05
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.27, C:0.27, G:0.27, T:0.20
Consensus pattern (22 bp):
AATTGCACCTAGTGCCACGTAG
Found at i:2399318 original size:103 final size:103
Alignment explanation
Indices: 2399193--2399403 Score: 395
Period size: 103 Copynumber: 2.0 Consensus size: 103
2399183 CATAAAGACC
2399193 ACATATCATTCCTTAAGAATCATATACATATGCCAAGCATCAAGTATGTGTCTCACCAGACCTCA
1 ACATATCATTCCTTAAGAATCATATACATATGCCAAGCATCAAGTATGTGTCTCACCAGACCTCA
2399258 CACATGTTCCAAAGAATACATATATGTCCCGAAGGACA
66 CACATGTTCCAAAGAATACATATATGTCCCGAAGGACA
* *
2399296 ACATATCATTCCTTAAGAATCATATGCATATGCCAAGGATCAAGTATGTGTCTCACCAGACCTCA
1 ACATATCATTCCTTAAGAATCATATACATATGCCAAGCATCAAGTATGTGTCTCACCAGACCTCA
*
2399361 CACATGTTCCAAAGAATACATATATGTCCCGAAGGACC
66 CACATGTTCCAAAGAATACATATATGTCCCGAAGGACA
2399399 ACATA
1 ACATA
2399404 GACCCTCTAC
Statistics
Matches: 105, Mismatches: 3, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
103 105 1.00
ACGTcount: A:0.36, C:0.25, G:0.13, T:0.25
Consensus pattern (103 bp):
ACATATCATTCCTTAAGAATCATATACATATGCCAAGCATCAAGTATGTGTCTCACCAGACCTCA
CACATGTTCCAAAGAATACATATATGTCCCGAAGGACA
Done.