genome.fa.s1839.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001839.1 Hibiscus syriacus cultivar Beakdansim tig00003723_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  159195

Tables:   1   

This is table  1  of  1  ( 96 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1734--1766	16	2.1	16	94	0	57	48	12	6	33	1.65
4816--4878	32	2.0	32	84	6	83	38	14	6	41	1.71
5051--5090	19	2.1	19	86	9	55	40	2	0	57	1.12
6139--6209	31	2.3	30	85	2	97	40	8	9	40	1.69
17017--17060	16	2.6	17	79	13	56	63	2	6	27	1.31
17511--17674	76	2.2	75	84	3	204	51	9	12	26	1.70
18943--19003	3	20.3	3	83	6	79	62	3	1	32	1.21
19052--19076	2	12.5	2	100	0	50	48	0	0	52	1.00
19535--19560	2	13.0	2	100	0	52	50	0	0	50	1.00
19737--19768	16	2.0	16	100	0	64	43	6	0	50	1.27
20972--21183	30	6.9	29	71	13	122	38	7	0	53	1.35
20972--21185	60	3.4	61	77	15	190	38	7	0	53	1.35
21239--21281	22	2.0	22	95	0	77	48	0	4	46	1.22
21205--21360	53	2.9	53	81	10	151	53	0	7	38	1.35
21278--21324	23	2.0	24	91	4	78	57	0	4	38	1.18
22549--22713	81	2.0	81	97	0	312	50	18	5	25	1.68
32295--32426	21	6.4	20	82	4	149	37	22	19	19	1.94
33444--33504	26	2.4	25	81	8	68	31	0	26	42	1.55
35324--35481	21	7.8	20	72	7	86	38	25	17	18	1.92
35448--35641	20	9.6	20	81	5	221	35	25	19	19	1.95
35448--35641	60	3.2	60	83	0	253	35	25	19	19	1.95
36021--36089	32	2.2	32	91	0	111	11	21	20	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36021--36070	18	3.0	18	69	22	54	12	22	22	44	1.85
36172--36281	21	5.8	20	74	17	108	45	18	24	11	1.83
36165--36281	41	3.1	38	81	14	145	46	17	25	11	1.81
36232--36288	14	3.7	14	75	20	60	43	22	24	8	1.81
36224--36304	33	2.5	33	95	0	144	46	22	22	8	1.78
36305--36419	33	3.5	33	93	0	203	9	24	20	46	1.80
36300--36397	19	5.7	19	68	22	81	10	24	21	43	1.83
36319--36411	14	5.9	14	69	22	60	8	25	22	43	1.82
38117--38492	93	4.1	93	98	0	727	22	12	18	46	1.83
38540--38667	19	7.3	19	73	17	116	46	28	16	8	1.76
38576--38667	33	2.8	32	88	6	132	46	28	17	7	1.75
38663--38797	19	7.6	19	76	16	137	11	19	22	46	1.81
38685--38741	14	3.7	14	79	20	69	10	21	21	47	1.80
38668--38760	33	2.8	33	96	0	177	10	20	20	48	1.79
40720--40755	14	2.6	14	95	0	63	33	0	22	44	1.53
40862--40956	19	5.2	19	83	13	137	45	16	23	14	1.85
40862--40977	53	2.2	53	96	1	216	43	17	24	14	1.86
41006--41170	19	9.4	19	75	19	180	14	21	17	46	1.83
40984--41142	52	3.0	52	97	0	300	14	23	16	45	1.84
40984--41184	33	5.9	33	76	15	212	13	22	17	45	1.84
43468--43492	12	2.1	12	100	0	50	0	28	0	72	0.86
43667--43713	24	2.0	24	87	8	69	38	21	14	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44396--44625	20	11.5	20	85	1	237	19	18	24	36	1.94
44612--44694	21	4.0	21	73	6	78	26	15	24	33	1.95
44592--44690	42	2.4	43	77	11	100	22	17	23	37	1.94
45995--46055	18	3.3	18	79	9	61	63	1	0	34	1.04
47390--47508	3	39.0	3	83	3	139	58	3	0	37	1.15
47641--48510	76	11.4	76	96	0	1605	35	21	20	22	1.96
47641--48510	229	3.8	228	97	0	1614	35	21	20	22	1.96
47641--48510	153	5.7	152	97	0	1605	35	21	20	22	1.96
51575--51915	114	3.0	114	93	2	551	30	20	15	33	1.94
59530--59590	18	3.3	18	79	9	61	63	1	0	34	1.04
61002--61117	3	38.0	3	84	3	124	57	2	0	39	1.12
61249--61600	32	11.1	32	89	1	496	27	17	19	35	1.94
65869--65897	14	2.0	15	93	6	51	62	0	0	37	0.96
67115--67182	31	2.2	32	89	2	102	22	10	23	44	1.83
67203--67249	20	2.3	20	96	0	85	23	12	31	31	1.92
72104--72140	11	3.3	11	96	3	65	43	0	0	56	0.99
72139--72222	3	28.0	3	95	0	150	64	1	1	33	1.09
72536--73322	113	7.0	112	93	0	1144	29	19	12	38	1.89
73875--74340	83	5.6	83	92	2	762	36	21	13	28	1.91
75114--75155	19	2.2	20	95	4	77	52	9	4	33	1.55
75489--75522	10	3.4	10	100	0	68	0	8	0	91	0.43
87150--87579	212	2.0	214	98	1	828	38	14	18	28	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88466--88500	11	3.3	11	96	4	63	42	0	0	57	0.99
88499--88576	3	26.0	3	92	0	129	62	1	1	34	1.11
90589--90640	23	2.3	23	78	15	63	19	5	3	71	1.22
91942--91984	21	2.0	21	86	0	59	58	11	0	30	1.34
92092--92151	22	2.6	23	78	19	70	53	5	0	41	1.23
92830--92885	28	2.0	28	89	6	87	53	8	0	37	1.32
93822--93891	30	2.3	29	79	11	79	32	18	5	42	1.74
95435--95526	46	2.0	46	93	0	157	26	18	26	29	1.98
95548--95592	2	22.5	2	100	0	90	51	0	0	48	1.00
105436--105500	31	2.1	31	100	0	130	49	9	21	20	1.76
106015--106081	29	2.3	29	84	7	91	31	2	37	28	1.72
115386--115439	19	2.7	20	85	8	65	44	0	1	53	1.11
115914--115971	31	1.9	30	89	3	89	39	3	3	53	1.35
116836--116883	25	2.0	24	87	4	69	43	4	0	52	1.20
116872--116910	19	2.2	19	86	9	55	43	5	0	51	1.24
126760--126816	22	2.9	19	78	16	71	61	5	0	33	1.18
130028--130064	18	2.0	20	89	10	60	48	5	8	37	1.56
131034--131332	153	2.0	153	86	0	427	15	18	26	39	1.91
131514--131572	2	29.5	2	100	0	118	49	0	0	50	1.00
134535--134597	29	2.2	28	83	8	74	49	11	0	39	1.38
135277--135335	30	2.0	30	86	0	82	25	28	27	18	1.98
135415--135451	19	1.9	19	88	0	56	24	27	27	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137509--137585	38	2.0	38	85	9	104	46	2	1	49	1.23
138464--138561	31	3.1	31	79	12	110	48	6	4	40	1.47
145554--145614	24	2.6	23	82	10	61	8	3	9	78	1.06
145579--145634	28	2.0	27	83	10	69	7	7	5	80	1.02
145579--145629	21	2.4	21	80	6	59	5	7	3	82	0.94
145707--145738	15	2.0	17	88	11	50	46	6	15	31	1.71
145823--145869	24	2.0	24	100	0	94	55	23	0	21	1.44
146720--147025	101	3.0	103	92	2	519	49	19	15	15	1.79

Tables:   1

The End!