genome.fa.s184.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000184.1 Hibiscus syriacus cultivar Beakdansim tig00000326_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  104624

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
865--1149	45	6.3	45	94	0	471	32	24	19	23	1.98
1891--1923	15	2.1	17	88	11	52	30	6	24	39	1.79
20696--20840	71	2.0	71	89	6	222	38	17	23	20	1.93
20701--20840	36	3.9	35	85	6	176	37	18	23	20	1.94
20696--20840	72	2.0	72	89	6	224	38	17	23	20	1.93
22426--22565	36	3.9	35	83	6	167	36	18	24	20	1.95
22421--22565	71	2.0	72	88	6	215	37	17	24	20	1.93
28986--29026	3	13.7	3	100	0	82	68	0	31	0	0.90
30262--30327	34	1.9	34	90	0	105	15	7	33	43	1.74
30276--30418	60	2.4	61	84	3	191	19	6	25	48	1.72
30299--30419	27	4.2	28	71	16	104	19	6	25	47	1.73
32072--32229	21	7.8	20	70	7	77	37	24	17	19	1.93
32197--32507	20	15.5	20	81	6	79	34	26	19	20	1.96
32197--32586	40	9.7	40	87	2	439	35	25	18	20	1.95
32235--32586	20	17.6	19	85	5	398	34	25	18	21	1.96
33262--33308	24	2.0	24	87	8	69	25	14	21	38	1.92
33483--33507	12	2.1	12	100	0	50	72	0	28	0	0.86
35791--36064	19	15.4	19	81	15	354	46	17	21	13	1.83
35819--36086	109	2.5	105	91	6	459	46	16	22	14	1.83
35819--36086	52	5.0	52	93	4	455	46	16	22	14	1.83
36093--36175	20	4.6	19	81	15	113	14	24	18	43	1.87
36281--36317	14	2.6	14	91	0	65	45	21	0	32	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38270--38326	14	3.7	14	77	20	60	45	22	21	10	1.82
38251--38343	33	2.8	33	95	0	168	47	21	20	10	1.80
38214--38348	19	7.6	19	76	16	128	45	23	19	11	1.82
38344--38472	19	7.3	19	75	17	125	8	17	28	45	1.77
38344--38435	33	2.8	33	93	3	150	7	18	28	45	1.76
38516--38893	92	4.1	93	98	1	726	46	18	12	22	1.82
40595--40684	14	5.7	14	74	23	81	42	23	25	8	1.83
40587--40701	33	3.5	33	95	0	212	45	20	24	9	1.81
40594--40706	19	6.8	18	72	23	88	43	22	24	9	1.83
40718--40772	14	3.6	14	73	21	56	9	25	23	41	1.83
40702--40772	33	2.2	33	94	0	124	8	22	25	43	1.81
40713--40794	33	2.5	33	89	2	119	9	25	21	42	1.84
40725--40813	20	4.8	20	72	19	75	12	24	19	43	1.85
40895--40962	33	2.1	33	91	0	109	48	19	22	10	1.78
41144--41198	22	2.5	22	81	0	74	20	16	40	23	1.91
41344--41536	20	9.6	20	82	5	219	19	19	25	35	1.95
41344--41536	60	3.2	60	83	0	251	19	19	25	35	1.95
51495--51620	63	2.0	63	96	0	234	22	23	13	41	1.89
58355--58400	14	3.3	14	96	0	83	8	15	26	50	1.73
58370--58420	24	2.1	24	85	7	68	13	11	19	54	1.69
59457--59505	16	3.1	16	93	0	80	6	14	26	53	1.64
59451--59489	10	4.3	10	75	24	50	7	12	23	56	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59575--59605	16	1.9	16	100	0	62	6	12	22	58	1.58
61001--61078	15	5.3	15	83	3	88	55	2	1	41	1.22
61086--61121	14	2.5	15	95	4	65	41	0	0	58	0.98
61066--61156	22	4.0	22	66	8	65	39	0	9	50	1.36
62471--62513	22	2.0	22	95	0	77	37	0	11	51	1.39
62463--63065	54	11.1	54	72	16	376	35	0	11	52	1.40
62516--62563	22	2.4	18	73	23	51	33	0	14	52	1.42
62577--62953	32	12.5	32	66	23	176	36	0	11	52	1.41
62603--62647	22	2.0	22	91	0	72	40	0	8	51	1.33
62516--62642	40	3.2	40	67	16	109	34	0	11	53	1.38
62463--63065	134	4.5	130	82	10	637	35	0	11	52	1.40
62659--62701	22	2.0	22	95	0	77	34	2	13	48	1.56
62463--62921	188	2.4	188	95	0	828	35	0	11	52	1.42
62793--62835	22	2.0	22	95	0	77	37	0	11	51	1.39
62847--62889	22	2.0	22	100	0	86	34	0	13	51	1.42
62878--62931	14	3.6	14	72	18	54	37	0	5	57	1.22
62985--63064	18	4.4	18	64	22	51	37	0	5	57	1.21
63079--63138	31	1.9	31	89	0	93	46	8	5	40	1.56
65969--66004	2	18.0	2	100	0	72	50	0	0	50	1.00
66208--66245	14	2.7	14	87	0	58	23	39	28	7	1.83
66301--66377	29	2.7	29	95	0	136	24	27	33	14	1.94
80116--80157	20	2.1	20	100	0	84	52	14	14	19	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83212--83258	22	2.1	23	84	4	60	31	4	0	63	1.13
83228--83269	21	2.0	21	86	4	59	35	4	2	57	1.33
83272--83338	10	6.7	10	75	12	50	25	1	7	65	1.27
87507--87537	16	1.9	16	93	0	53	48	19	12	19	1.81
95981--96032	2	26.0	2	100	0	104	50	0	0	50	1.00
97456--97492	18	2.1	18	100	0	74	35	32	21	10	1.88
102710--102762	21	2.5	21	75	6	54	20	22	18	37	1.94
102792--102906	20	5.7	20	84	6	133	32	26	18	22	1.97
102790--102926	41	3.4	40	83	6	177	34	25	17	22	1.96
103093--103167	28	2.7	28	97	0	141	24	49	9	17	1.75
103430--103488	20	3.0	20	87	0	73	15	18	22	44	1.87
103625--103679	25	2.2	24	78	15	58	20	9	18	52	1.71

Tables:   1

The End!