Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001840.1 Hibiscus syriacus cultivar Beakdansim tig00003725_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2412736
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 4 of 12
Found at i:623104 original size:24 final size:24
Alignment explanation
Indices: 623061--623108 Score: 71
Period size: 24 Copynumber: 2.0 Consensus size: 24
623051 TATTTTCTCT
623061 CTTTTTCTTTTTTCTATTTTTTTC
1 CTTTTTCTTTTTTCTATTTTTTTC
*
623085 CTTTTT-TTTTTTCCTTTTTTTTTC
1 CTTTTTCTTTTTT-CTATTTTTTTC
623109 TATCTTTTCT
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 6 0.27
24 16 0.73
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (24 bp):
CTTTTTCTTTTTTCTATTTTTTTC
Found at i:623155 original size:14 final size:14
Alignment explanation
Indices: 623134--623167 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
623124 TCCCTTTTTT
*
623134 TCATTTCTTATTTC
1 TCATTTCTCATTTC
*
623148 TTATTTCTCATTTC
1 TCATTTCTCATTTC
623162 TCATTT
1 TCATTT
623168 TTCTTCTTCT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.15, C:0.21, G:0.00, T:0.65
Consensus pattern (14 bp):
TCATTTCTCATTTC
Found at i:628931 original size:279 final size:279
Alignment explanation
Indices: 628428--628988 Score: 998
Period size: 279 Copynumber: 2.0 Consensus size: 279
628418 GCTAAAATAA
*
628428 AAATACAAATTTAATTAAAATTAATAATCATGAAGAAATTTTTAACAAACTAATTAGCAAAAAGG
1 AAATACAAATTTAATTAAAATTAATAATCATGAAGAAAATTTTAACAAACTAATTAGCAAAAAGG
* *
628493 TTAATCAATAATGTAATTAATCTGAAGAGTAAAATGTAACAAAAACAACAAATCATGGATCAAAA
66 TTAATCAATAACGTAATTAATCTGAAGAGTAAAATATAACAAAAACAACAAATCATGGATCAAAA
* * * * * *
628558 TTAAAACGACAACATTTAAATAAGGGACTAAATTAAAATTAATAGAATAATTTAGGGATCTAATT
131 TTAAAACAACAACATTTAAATAAGGAACTAAATTAAAATAAAAAGAATAATTCAGGGACCTAATT
**
628623 TTAATACAATGAACAAATCAACGTGGTGACCAAATTAGCATAAATCAAAATTAATCATAAATAAA
196 TTAATACAATGAACAAATCAAAATGGTGACCAAATTAGCATAAATCAAAATTAATCATAAATAAA
628688 TTAGAAATATGACAAGACC
261 TTAGAAATATGACAAGACC
628707 AAATACAAATTTAATTAAAATTAATAATCATGAAGAAAATTTTAACAAACTAATTAGCAAAAAGG
1 AAATACAAATTTAATTAAAATTAATAATCATGAAGAAAATTTTAACAAACTAATTAGCAAAAAGG
628772 TTAATCAATAACGTAATTAATCTGAAGAGTAAAATATAA-AAAAACAACAAATCATGGATCAAAA
66 TTAATCAATAACGTAATTAATCTGAAGAGTAAAATATAACAAAAACAACAAATCATGGATCAAAA
628836 TTAAAACAACAACATTTAAATAAGGAACTAAATTAAAATAAAAAGAATAATTCAGGGACCTAATT
131 TTAAAACAACAACATTTAAATAAGGAACTAAATTAAAATAAAAAGAATAATTCAGGGACCTAATT
*
628901 TTCATACAATGAAACAAATCAAAATGGTGACCAAATTAGCATAAATCAAAATTAATCATAAATAA
196 TTAATACAATG-AACAAATCAAAATGGTGACCAAATTAGCATAAATCAAAATTAATCATAAATAA
628966 ATTAGAAATATGACAAGACC
260 ATTAGAAATATGACAAGACC
628986 AAA
1 AAA
628989 ATATGAGAGC
Statistics
Matches: 269, Mismatches: 12, Indels: 2
0.95 0.04 0.01
Matches are distributed among these distances:
278 94 0.35
279 175 0.65
ACGTcount: A:0.54, C:0.11, G:0.10, T:0.26
Consensus pattern (279 bp):
AAATACAAATTTAATTAAAATTAATAATCATGAAGAAAATTTTAACAAACTAATTAGCAAAAAGG
TTAATCAATAACGTAATTAATCTGAAGAGTAAAATATAACAAAAACAACAAATCATGGATCAAAA
TTAAAACAACAACATTTAAATAAGGAACTAAATTAAAATAAAAAGAATAATTCAGGGACCTAATT
TTAATACAATGAACAAATCAAAATGGTGACCAAATTAGCATAAATCAAAATTAATCATAAATAAA
TTAGAAATATGACAAGACC
Found at i:629418 original size:21 final size:21
Alignment explanation
Indices: 629371--629418 Score: 51
Period size: 21 Copynumber: 2.2 Consensus size: 21
629361 CCTAGCCCTT
* *
629371 AGGTGTACATACCCAGCCCGCA
1 AGGT-TACATACCCAACCCACA
*
629393 AGGTTACATGCCCAACCCACA
1 AGGTTACATACCCAACCCACA
*
629414 TGGTT
1 AGGTT
629419 TTATGACACC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
21 18 0.82
22 4 0.18
ACGTcount: A:0.27, C:0.33, G:0.21, T:0.19
Consensus pattern (21 bp):
AGGTTACATACCCAACCCACA
Found at i:629972 original size:46 final size:46
Alignment explanation
Indices: 629879--629965 Score: 115
Period size: 46 Copynumber: 1.9 Consensus size: 46
629869 TTGTTACAAC
* ** * *
629879 AATGTTTTTAAAATTTAAATTTAAATTCAACATTAAATGTTTCTTA
1 AATGTTTTTAAAATGTAAATCCAAATTCAACATTAAATATTCCTTA
629925 AATGTTTTTAAAATGTAAATCCAAATTCAAC-TT-AATATTCC
1 AATGTTTTTAAAATGTAAATCCAAATTCAACATTAAATATTCC
629966 AATTAAAATT
Statistics
Matches: 36, Mismatches: 5, Indels: 2
0.84 0.12 0.05
Matches are distributed among these distances:
44 6 0.17
45 2 0.06
46 28 0.78
ACGTcount: A:0.41, C:0.10, G:0.05, T:0.44
Consensus pattern (46 bp):
AATGTTTTTAAAATGTAAATCCAAATTCAACATTAAATATTCCTTA
Found at i:630965 original size:138 final size:137
Alignment explanation
Indices: 630596--631647 Score: 1051
Period size: 139 Copynumber: 7.7 Consensus size: 137
630586 CTCTAGGGCT
* *
630596 CAATTATAACATAATCTCTGACAAAAAAAGGGAAGGCT-CATCCCACAAGAAGCGTTTTAACCAC
1 CAATTATAACATATTCTCTGAC-AAAAAAGGGAAGG-TGCATCCCACAAGAAGCGCTTTAACCAC
* * * **
630660 ATTGTTGCGTCCCCTCAAACATGATATGTGTTGACATAAATAATGCCATTCCAAGGGACATCACA
64 ATTGTTGCGTCCCCTCAAACATGATAGGTGTTGACATGAATAGTG-CATTCCGGGGGACATCACA
630725 CATAATAGGG
128 CATAATAGGG
* *** * * *
630735 CAATTATAACATATTCTTTGACAAAAAAAAGGGAAGACACGTCCCATAAGAAGCTCTTTAACCAC
1 CAATTATAACATATTCTCTGAC--AAAAAAGGGAAGGTGCATCCCACAAGAAGCGCTTTAACCAC
* *
630800 ATTGTTGTGTCCCCTCAAACATGATAGGTGTTGACATGAATAGTGCAATTTCGGGGGACATCACA
64 ATTGTTGCGTCCCCTCAAACATGATAGGTGTTGACATGAATAGTGC-ATTCCGGGGGACATCACA
630865 CATAATAGGG
128 CATAATAGGG
* * *
630875 TAATTATAACATATTCTCTGACAAAAAAGGGAAGGTGCATCCCATAAGAAGCACTTTAACCACAT
1 CAATTATAACATATTCTCTGACAAAAAAGGGAAGGTGCATCCCACAAGAAGCGCTTTAACCACAT
* **
630940 TGTTGCATCCCCTCAAACATGATAGGTGTTGACATGAATAGTGTCATTTTGGGGGA-ATCACACA
66 TGTTGCGTCCCCTCAAACATGATAGGTGTTGACATGAATAGTG-CATTCCGGGGGACATCACACA
631004 TAATAGGG
130 TAATAGGG
* * * * * *
631012 TAACTATAACATATTATCTGATAAAAAAAGGGAAGGAG-AGTCCCACAAGAAGCGCTTTTCACCA
1 CAATTATAACATATTCTCTGA-CAAAAAAGGGAAGGTGCA-TCCCACAAGAAGCGC-TTTAACCA
* * *
631076 CATTGTTGTGTCCCCTCAAACATGATATGTGTTGACATGAATAGTGTTATTCCGGGGGACATCAC
63 CATTGTTGCGTCCCCTCAAACATGATAGGTGTTGACATGAATAGTG-CATTCCGGGGGACATCAC
631141 ACATAATAGGG
127 ACATAATAGGG
* ** * * ***
631152 CAACTATAACATATTCTCTGACAAAAAAGGGAA---GCACTTTCACCA-TA----TTT--TTGCA
1 CAATTATAACATATTCTCTGACAAAAAAGGGAAGGTGCA-TCCCACAAGAAGCGCTTTAACCACA
* * * * * * * *
631207 ---TT-C--CCTC-AAACATGATAGGT-GTTGACATGA-AT-AGT-G-CCATTCCGGGGGACATC
65 TTGTTGCGTCCCCTCAA-A-CAT-GATAGGTG--TTGACATGAATAGTGCATTCCGGGGGACATC
631260 ACACATAATAGGG
125 ACACATAATAGGG
* ** * * *
631273 AAATTATAACATATTCTCTGACAAAAAAAGGGAAGGCACATCCCACAAGAAGTGTTTTCACCACA
1 CAATTATAACATATTCTCTGAC-AAAAAAGGGAAGGTGCATCCCACAAGAAGCGCTTTAACCACA
** * *
631338 TTGTTGTATCCCCTCAAACATGATAGGTGCTGACATGAATAGTGTCATTTCGGGGGACATCACAC
65 TTGTTGCGTCCCCTCAAACATGATAGGTGTTGACATGAATAGTG-CATTCCGGGGGACATCACAC
631403 ATAATAGGG
129 ATAATAGGG
* * * * * * * *
631412 CAATTATAACCTATTCTCTAACAAATAAAGGGAAGGCGCGTTCCATAAGAAGCGCTTTCAGCACA
1 CAATTATAACATATTCTCTGACAAA-AAAGGGAAGGTGCATCCCACAAGAAGCGCTTTAACCACA
* * * *
631477 TTGTTGTGTCCTCTCAAACATGATAGGTAG-TGACATGAATAGTGCCTCGCCGGGGGACATCACA
65 TTGTTGCGTCCCCTCAAACATGATAGGT-GTTGACATGAATAGTGCAT-TCCGGGGGACATCACA
631541 CATAATAGGG
128 CATAATAGGG
* * * * *
631551 CAATTATAACTTATTCTCTGA-TAAAAAGGGAAGGCGCATCCTACAAGAAGTGCTTTAACCACAT
1 CAATTATAACATATTCTCTGACAAAAAAGGGAAGGTGCATCCCACAAGAAGCGCTTTAACCACAT
631615 TGTTGCGTCCCCTCAAACATGATAGGTGTTGAC
66 TGTTGCGTCCCCTCAAACATGATAGGTGTTGAC
631648 GTGTATCAAA
Statistics
Matches: 764, Mismatches: 107, Indels: 86
0.80 0.11 0.09
Matches are distributed among these distances:
121 48 0.06
122 13 0.02
123 5 0.01
124 11 0.01
125 7 0.01
126 5 0.01
129 5 0.01
131 5 0.01
134 5 0.01
135 4 0.01
136 10 0.01
137 109 0.14
138 125 0.16
139 255 0.33
140 157 0.21
ACGTcount: A:0.35, C:0.20, G:0.19, T:0.26
Consensus pattern (137 bp):
CAATTATAACATATTCTCTGACAAAAAAGGGAAGGTGCATCCCACAAGAAGCGCTTTAACCACAT
TGTTGCGTCCCCTCAAACATGATAGGTGTTGACATGAATAGTGCATTCCGGGGGACATCACACAT
AATAGGG
Found at i:631548 original size:399 final size:397
Alignment explanation
Indices: 630811--631583 Score: 1183
Period size: 399 Copynumber: 1.9 Consensus size: 397
630801 TTGTTGTGTC
* *
630811 CCCTCAAACATGATAGGTGTTGACATGAATAGTGCAATTTCGGGGGACATCACACATAATAGGGT
1 CCCTCAAACATGATAGGTGTTGACATGAATAGTGCAATTCCGGGGGACATCACACATAATAGGGA
** *
630876 AATTATAACATATTCTCTGACAAAAAAGGGAAGGTGCATCCCATAAGAAGCACTTTAACCACATT
66 AATTATAACATATTCTCTGACAAAAAAGGGAAGGCACATCCCACAAGAAGCACTTTAACCACATT
* *
630941 GTTGCATCCCCTCAAACATGATAGGTGTTGACATGAATAGTGTCATTTTGGGGGAATCACACATA
131 GTTGCATCCCCTCAAACATGATAGGTGCTGACATGAATAGTGTCATTTCGGGGGAATCACACATA
* * *
631006 ATAGGGTAACTATAACATATTATCTGATAAAAAAAGGGAAGGAGAGTCCCACAAGAAGCGCTTTT
196 ATAGGGCAACTATAACATATTATCTAACAAAAAAAGGGAAGGAGAGTCCCACAAGAAGCGCTTTT
* * **
631071 CACCACATTGTTGTGTCCCCTCAAACATGATATGTGTTGACATGAATAGTGTTATTCCGGGGGAC
261 CACCACATTGTTGTGTCCCCTCAAACATGATAGGTGTTGACATGAATAGTGCTACGCCGGGGGAC
631136 ATCACACATAATAGGGCAACTATAACATATTCTCTGACAAAAAAGGGAAGCACTTTCACCATATT
326 ATCACACATAATAGGGCAACTATAACATATTCTCTGA-AAAAAAGGGAAGCACTTTCACCATATT
631201 TTTGCATT
390 TTTGCATT
*
631209 CCCTCAAACATGATAGGTGTTGACATGAATAGTGCCATTCCGGGGGACATCACACATAATAGGGA
1 CCCTCAAACATGATAGGTGTTGACATGAATAGTGCAATTCCGGGGGACATCACACATAATAGGGA
*** *
631274 AATTATAACATATTCTCTGACAAAAAAAGGGAAGGCACATCCCACAAGAAGTGTTTTCACCACAT
66 AATTATAACATATTCTCTGAC-AAAAAAGGGAAGGCACATCCCACAAGAAGCACTTTAACCACAT
*
631339 TGTTGTATCCCCTCAAACATGATAGGTGCTGACATGAATAGTGTCATTTCGGGGGACATCACACA
130 TGTTGCATCCCCTCAAACATGATAGGTGCTGACATGAATAGTGTCATTTCGGGGGA-ATCACACA
* * * * * * * *
631404 TAATAGGGCAATTATAACCTATTCTCTAACAAATAAAGGGAAGGCGCGTTCCATAAGAAGCGC-T
194 TAATAGGGCAACTATAACATATTATCTAACAAAAAAAGGGAAGGAGAGTCCCACAAGAAGCGCTT
* *
631468 TTCAGCACATTGTTGTGTCCTCTCAAACATGATAGGTAG-TGACATGAATAGTGCCT-CGCCGGG
259 TTCACCACATTGTTGTGTCCCCTCAAACATGATAGGT-GTTGACATGAATAGTG-CTACGCCGGG
* * *
631531 GGACATCACACATAATAGGGCAATTATAACTTATTCTCTGATAAAAAGGGAAG
322 GGACATCACACATAATAGGGCAACTATAACATATTCTCTGAAAAAAAGGGAAG
631584 GCGCATCCTA
Statistics
Matches: 338, Mismatches: 33, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
398 94 0.28
399 182 0.54
400 62 0.18
ACGTcount: A:0.34, C:0.20, G:0.20, T:0.26
Consensus pattern (397 bp):
CCCTCAAACATGATAGGTGTTGACATGAATAGTGCAATTCCGGGGGACATCACACATAATAGGGA
AATTATAACATATTCTCTGACAAAAAAGGGAAGGCACATCCCACAAGAAGCACTTTAACCACATT
GTTGCATCCCCTCAAACATGATAGGTGCTGACATGAATAGTGTCATTTCGGGGGAATCACACATA
ATAGGGCAACTATAACATATTATCTAACAAAAAAAGGGAAGGAGAGTCCCACAAGAAGCGCTTTT
CACCACATTGTTGTGTCCCCTCAAACATGATAGGTGTTGACATGAATAGTGCTACGCCGGGGGAC
ATCACACATAATAGGGCAACTATAACATATTCTCTGAAAAAAAGGGAAGCACTTTCACCATATTT
TTGCATT
Found at i:633447 original size:26 final size:27
Alignment explanation
Indices: 633410--633469 Score: 63
Period size: 28 Copynumber: 2.2 Consensus size: 27
633400 AATGTCTTTG
633410 TTTCTAATATTT-AAATGTAAT-TGTAT
1 TTTCTAATATTTCAAATGT-ATGTGTAT
*
633436 TTTCT-ATAATTTCCCAATGTATGTGTAT
1 TTTCTAAT-ATTT-CAAATGTATGTGTAT
633464 TTTCTA
1 TTTCTA
633470 CCTAAATTTT
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
25 2 0.07
26 9 0.32
27 2 0.07
28 15 0.54
ACGTcount: A:0.28, C:0.10, G:0.08, T:0.53
Consensus pattern (27 bp):
TTTCTAATATTTCAAATGTATGTGTAT
Found at i:639873 original size:35 final size:35
Alignment explanation
Indices: 639802--639874 Score: 89
Period size: 35 Copynumber: 2.1 Consensus size: 35
639792 AACAACAAAC
*
639802 TTACAATAAGAATTAAATGGTAAATGATAATCAAA
1 TTACAATAAGAATTAAATGGTAAATGATAATAAAA
639837 TTACAATAACTGATATTAAATGGT-AAT-A-AATAAAA
1 TTACAATAA--GA-ATTAAATGGTAAATGATAATAAAA
639872 TTA
1 TTA
639875 ACTGAAATAT
Statistics
Matches: 34, Mismatches: 1, Indels: 6
0.83 0.02 0.15
Matches are distributed among these distances:
35 18 0.53
36 1 0.03
37 5 0.15
38 10 0.29
ACGTcount: A:0.53, C:0.05, G:0.10, T:0.32
Consensus pattern (35 bp):
TTACAATAAGAATTAAATGGTAAATGATAATAAAA
Found at i:640452 original size:18 final size:18
Alignment explanation
Indices: 640426--640461 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
640416 AAAGGCGATG
* *
640426 GCGGTATCATATATGGCT
1 GCGGCATCATAAATGGCT
640444 GCGGCATCATAAATGGCT
1 GCGGCATCATAAATGGCT
640462 ACGGTGGCTG
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.28, T:0.28
Consensus pattern (18 bp):
GCGGCATCATAAATGGCT
Found at i:642160 original size:17 final size:18
Alignment explanation
Indices: 642140--642180 Score: 66
Period size: 18 Copynumber: 2.3 Consensus size: 18
642130 GAATTATATT
642140 AGTAAAAT-ATTAAATAA
1 AGTAAAATAATTAAATAA
642157 AGTAAAATAATTAAATAA
1 AGTAAAATAATTAAATAA
*
642175 ATTAAA
1 AGTAAA
642181 TACATAATAT
Statistics
Matches: 22, Mismatches: 1, Indels: 1
0.92 0.04 0.04
Matches are distributed among these distances:
17 8 0.36
18 14 0.64
ACGTcount: A:0.66, C:0.00, G:0.05, T:0.29
Consensus pattern (18 bp):
AGTAAAATAATTAAATAA
Found at i:647285 original size:19 final size:19
Alignment explanation
Indices: 647262--647304 Score: 61
Period size: 19 Copynumber: 2.3 Consensus size: 19
647252 TTTTGCATCC
647262 ACATTTTA-CTTTTCACATT
1 ACATTTTATC-TTTCACATT
*
647281 GCATTTTATCTTTCACATT
1 ACATTTTATCTTTCACATT
647300 ACATT
1 ACATT
647305 CTATTGATTT
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
19 20 0.95
20 1 0.05
ACGTcount: A:0.26, C:0.21, G:0.02, T:0.51
Consensus pattern (19 bp):
ACATTTTATCTTTCACATT
Found at i:656747 original size:41 final size:41
Alignment explanation
Indices: 656700--656784 Score: 152
Period size: 41 Copynumber: 2.1 Consensus size: 41
656690 ATGACACTCG
*
656700 AGTCAAGGAAGATTCTCATATTTATCAGTGATCAAACAGCT
1 AGTCAAGGAAGATTCTCATATTTATCACTGATCAAACAGCT
*
656741 AGTCAAGGCAGATTCTCATATTTATCACTGATCAAACAGCT
1 AGTCAAGGAAGATTCTCATATTTATCACTGATCAAACAGCT
656782 AGT
1 AGT
656785 TAAGAATACT
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
41 42 1.00
ACGTcount: A:0.35, C:0.19, G:0.16, T:0.29
Consensus pattern (41 bp):
AGTCAAGGAAGATTCTCATATTTATCACTGATCAAACAGCT
Found at i:666647 original size:26 final size:27
Alignment explanation
Indices: 666599--666651 Score: 72
Period size: 26 Copynumber: 2.0 Consensus size: 27
666589 TCTGAGTATC
*
666599 TTTTTAATACACTCGAATCTTAAATGA
1 TTTTTAATACACTCAAATCTTAAATGA
* *
666626 TTTTTGATACA-TCAAATTTTAAATGA
1 TTTTTAATACACTCAAATCTTAAATGA
666652 AAATTAGATT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
26 13 0.57
27 10 0.43
ACGTcount: A:0.38, C:0.11, G:0.08, T:0.43
Consensus pattern (27 bp):
TTTTTAATACACTCAAATCTTAAATGA
Found at i:670019 original size:21 final size:21
Alignment explanation
Indices: 669994--670044 Score: 93
Period size: 21 Copynumber: 2.4 Consensus size: 21
669984 GCTCGTGCTA
669994 GAGTTGGTTGCTCGGCAGTAG
1 GAGTTGGTTGCTCGGCAGTAG
*
670015 GAGTTGGTTGTTCGGCAGTAG
1 GAGTTGGTTGCTCGGCAGTAG
670036 GAGTTGGTT
1 GAGTTGGTT
670045 TTGCTGGAAC
Statistics
Matches: 29, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.14, C:0.10, G:0.43, T:0.33
Consensus pattern (21 bp):
GAGTTGGTTGCTCGGCAGTAG
Found at i:675519 original size:21 final size:19
Alignment explanation
Indices: 675486--675526 Score: 55
Period size: 21 Copynumber: 2.1 Consensus size: 19
675476 TGCATCAAGG
*
675486 TCTTTGTGGAGGCCATGAAA
1 TCTTTGTCGAGGCCAT-AAA
675506 TCTTTCGTCGAGGCCATAAA
1 TCTTT-GTCGAGGCCATAAA
675526 T
1 T
675527 TCATGCAATG
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
20 9 0.47
21 10 0.53
ACGTcount: A:0.24, C:0.20, G:0.24, T:0.32
Consensus pattern (19 bp):
TCTTTGTCGAGGCCATAAA
Found at i:679590 original size:18 final size:19
Alignment explanation
Indices: 679567--679602 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
679557 GCCCTAAAAT
679567 AATAAAAATTAT-ATATTA
1 AATAAAAATTATAATATTA
679585 AATAAAAATTATAATATT
1 AATAAAAATTATAATATT
679603 TTAAATTTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.61, C:0.00, G:0.00, T:0.39
Consensus pattern (19 bp):
AATAAAAATTATAATATTA
Found at i:680639 original size:2 final size:2
Alignment explanation
Indices: 680627--680705 Score: 133
Period size: 2 Copynumber: 40.0 Consensus size: 2
680617 AACTAAAATA
* *
680627 AT AT AT TT AT AT AT AT A- AA AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
680668 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
680706 GGGCGATGAA
Statistics
Matches: 73, Mismatches: 3, Indels: 2
0.94 0.04 0.03
Matches are distributed among these distances:
1 1 0.01
2 72 0.99
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:684761 original size:27 final size:27
Alignment explanation
Indices: 684731--684790 Score: 84
Period size: 27 Copynumber: 2.2 Consensus size: 27
684721 CTATTATTTC
* * * *
684731 TACCGGTTTTGTTATTATTGGGCGCTT
1 TACCGATTTTATTATTATTGAGCACTT
684758 TACCGATTTTATTATTATTGAGCACTT
1 TACCGATTTTATTATTATTGAGCACTT
684785 TACCGA
1 TACCGA
684791 AAATATTAAA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.20, C:0.17, G:0.18, T:0.45
Consensus pattern (27 bp):
TACCGATTTTATTATTATTGAGCACTT
Found at i:684797 original size:27 final size:27
Alignment explanation
Indices: 684742--684798 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
684732 ACCGGTTTTG
* * ***
684742 TTATTATTGGGCGCTTTACCGATTTTA
1 TTATTATTGAGCACTTTACCGAAAATA
684769 TTATTATTGAGCACTTTACCGAAAATA
1 TTATTATTGAGCACTTTACCGAAAATA
684796 TTA
1 TTA
684799 AAAAACATTA
Statistics
Matches: 25, Mismatches: 5, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
27 25 1.00
ACGTcount: A:0.28, C:0.14, G:0.14, T:0.44
Consensus pattern (27 bp):
TTATTATTGAGCACTTTACCGAAAATA
Found at i:688661 original size:35 final size:35
Alignment explanation
Indices: 688593--688707 Score: 187
Period size: 35 Copynumber: 3.3 Consensus size: 35
688583 ACCCATTCCT
* * *
688593 ATTTTC-AACAAACATCTACCAAACTTTGAAAAAC
1 ATTTTCAAAGAAACATTTACCAAACTTTGAAAACC
688627 ATTTTTCAAAGAAACATTTACCAAACTTTGAAAACC
1 A-TTTTCAAAGAAACATTTACCAAACTTTGAAAACC
688663 ATTTTCAAAGAAACATTTACCAAACTTTGAAAACC
1 ATTTTCAAAGAAACATTTACCAAACTTTGAAAACC
688698 ATTTTCAAAG
1 ATTTTCAAAG
688708 TTGGTTGCCA
Statistics
Matches: 76, Mismatches: 3, Indels: 3
0.93 0.04 0.04
Matches are distributed among these distances:
34 1 0.01
35 49 0.64
36 26 0.34
ACGTcount: A:0.45, C:0.20, G:0.05, T:0.30
Consensus pattern (35 bp):
ATTTTCAAAGAAACATTTACCAAACTTTGAAAACC
Found at i:688665 original size:21 final size:21
Alignment explanation
Indices: 688641--688701 Score: 64
Period size: 21 Copynumber: 3.2 Consensus size: 21
688631 TTCAAAGAAA
688641 CATTTACCAAACTTTGAAAAC
1 CATTTACCAAACTTTGAAAAC
*
688662 CATTT-TCAAA----G-AAA-
1 CATTTACCAAACTTTGAAAAC
688676 CATTTACCAAACTTTGAAAAC
1 CATTTACCAAACTTTGAAAAC
688697 CATTT
1 CATTT
688702 TCAAAGTTGG
Statistics
Matches: 31, Mismatches: 2, Indels: 14
0.66 0.04 0.30
Matches are distributed among these distances:
14 5 0.16
15 7 0.23
16 1 0.03
19 1 0.03
20 7 0.23
21 10 0.32
ACGTcount: A:0.43, C:0.21, G:0.05, T:0.31
Consensus pattern (21 bp):
CATTTACCAAACTTTGAAAAC
Found at i:693267 original size:35 final size:35
Alignment explanation
Indices: 693202--693306 Score: 169
Period size: 35 Copynumber: 3.0 Consensus size: 35
693192 AACATCTATC
693202 AAAC-TTTACCAAACTTTGAAAAA-CATTTTTCAAAG
1 AAACATTTACCAAACTTT-AAAAACCA-TTTTCAAAG
693237 AAACATTTACCAAACTTTAAAAACCATTTTCAAAG
1 AAACATTTACCAAACTTTAAAAACCATTTTCAAAG
*
693272 AAACATTTACCAAACTTTGAAAACCATTTTCAAAG
1 AAACATTTACCAAACTTTAAAAACCATTTTCAAAG
693307 TTGGTTGCCA
Statistics
Matches: 67, Mismatches: 1, Indels: 4
0.93 0.01 0.06
Matches are distributed among these distances:
35 52 0.78
36 15 0.22
ACGTcount: A:0.47, C:0.19, G:0.05, T:0.30
Consensus pattern (35 bp):
AAACATTTACCAAACTTTAAAAACCATTTTCAAAG
Found at i:698547 original size:22 final size:22
Alignment explanation
Indices: 698519--698566 Score: 96
Period size: 22 Copynumber: 2.2 Consensus size: 22
698509 ATTCTTATTT
698519 GTAGATATTCAATTAGATTCAA
1 GTAGATATTCAATTAGATTCAA
698541 GTAGATATTCAATTAGATTCAA
1 GTAGATATTCAATTAGATTCAA
698563 GTAG
1 GTAG
698567 GTGAGAACAT
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.40, C:0.08, G:0.17, T:0.35
Consensus pattern (22 bp):
GTAGATATTCAATTAGATTCAA
Found at i:699204 original size:7 final size:7
Alignment explanation
Indices: 699194--699241 Score: 96
Period size: 7 Copynumber: 6.9 Consensus size: 7
699184 TTAAACTACA
699194 TTTTTCC
1 TTTTTCC
699201 TTTTTCC
1 TTTTTCC
699208 TTTTTCC
1 TTTTTCC
699215 TTTTTCC
1 TTTTTCC
699222 TTTTTCC
1 TTTTTCC
699229 TTTTTCC
1 TTTTTCC
699236 TTTTTC
1 TTTTTC
699242 ATGCATGCAT
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
7 41 1.00
ACGTcount: A:0.00, C:0.27, G:0.00, T:0.73
Consensus pattern (7 bp):
TTTTTCC
Found at i:700109 original size:16 final size:16
Alignment explanation
Indices: 700088--700136 Score: 71
Period size: 16 Copynumber: 3.1 Consensus size: 16
700078 TAATAAATAA
700088 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
*
700104 ACGAACATAAATGAAC
1 ACGAACATAAACGAAC
* *
700120 GCGAACATAATCGAAC
1 ACGAACATAAACGAAC
700136 A
1 A
700137 TAAACGTTGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
16 28 1.00
ACGTcount: A:0.53, C:0.22, G:0.14, T:0.10
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:700377 original size:23 final size:23
Alignment explanation
Indices: 700323--700434 Score: 161
Period size: 23 Copynumber: 4.8 Consensus size: 23
700313 AAAAAATTAA
* * **
700323 GAGCTCGATTAAAACTCGAGACT
1 GAGCTCGATTCAAGCTCGATTCT
*
700346 CGAGCTCGATTGAAGCTCGATTCT
1 -GAGCTCGATTCAAGCTCGATTCT
700370 GAGCTCGATTCAAGCTCGATTCT
1 GAGCTCGATTCAAGCTCGATTCT
700393 GAGCTCGATTCAAGCTCGATTCT
1 GAGCTCGATTCAAGCTCGATTCT
*
700416 GAGCTCAATTCAAGCTCGA
1 GAGCTCGATTCAAGCTCGA
700435 CATTGCCCCT
Statistics
Matches: 82, Mismatches: 6, Indels: 1
0.92 0.07 0.01
Matches are distributed among these distances:
23 63 0.77
24 19 0.23
ACGTcount: A:0.26, C:0.25, G:0.22, T:0.27
Consensus pattern (23 bp):
GAGCTCGATTCAAGCTCGATTCT
Found at i:700414 original size:11 final size:11
Alignment explanation
Indices: 700348--700434 Score: 102
Period size: 11 Copynumber: 7.6 Consensus size: 11
700338 TCGAGACTCG
*
700348 AGCTCGATTGA
1 AGCTCGATTCA
*
700359 AGCTCGATTCTG
1 AGCTCGATTC-A
700371 AGCTCGATTCA
1 AGCTCGATTCA
*
700382 AGCTCGATTCTG
1 AGCTCGATTC-A
700394 AGCTCGATTCA
1 AGCTCGATTCA
*
700405 AGCTCGATTCTG
1 AGCTCGATTC-A
*
700417 AGCTCAATTCA
1 AGCTCGATTCA
700428 AGCTCGA
1 AGCTCGA
700435 CATTGCCCCT
Statistics
Matches: 64, Mismatches: 9, Indels: 6
0.81 0.11 0.08
Matches are distributed among these distances:
11 35 0.55
12 29 0.45
ACGTcount: A:0.24, C:0.25, G:0.22, T:0.29
Consensus pattern (11 bp):
AGCTCGATTCA
Found at i:700964 original size:10 final size:10
Alignment explanation
Indices: 700949--701010 Score: 52
Period size: 10 Copynumber: 5.4 Consensus size: 10
700939 ATAAATGAAT
700949 GAACATAAAC
1 GAACATAAAC
700959 GAACATAACCGAAC
1 GAACAT-A---AAC
700973 GAACATAAAC
1 GAACATAAAC
700983 GAACATAACCGAAC
1 GAACAT-A---AAC
700997 GAACATAAAC
1 GAACATAAAC
701007 GAAC
1 GAAC
701011 GTTCAGGAAC
Statistics
Matches: 44, Mismatches: 0, Indels: 16
0.73 0.00 0.27
Matches are distributed among these distances:
10 22 0.50
11 2 0.05
13 2 0.05
14 18 0.41
ACGTcount: A:0.55, C:0.24, G:0.13, T:0.08
Consensus pattern (10 bp):
GAACATAAAC
Found at i:700973 original size:14 final size:14
Alignment explanation
Indices: 700956--701011 Score: 75
Period size: 14 Copynumber: 4.3 Consensus size: 14
700946 AATGAACATA
700956 AACGAACATAACCG
1 AACGAACATAACCG
700970 AACGAACAT-A---
1 AACGAACATAACCG
700980 AACGAACATAACCG
1 AACGAACATAACCG
*
700994 AACGAACATAAACG
1 AACGAACATAACCG
701008 AACG
1 AACG
701012 TTCAGGAACG
Statistics
Matches: 37, Mismatches: 1, Indels: 8
0.80 0.02 0.17
Matches are distributed among these distances:
10 9 0.24
11 1 0.03
13 1 0.03
14 26 0.70
ACGTcount: A:0.54, C:0.25, G:0.14, T:0.07
Consensus pattern (14 bp):
AACGAACATAACCG
Found at i:700976 original size:24 final size:24
Alignment explanation
Indices: 700949--701010 Score: 124
Period size: 24 Copynumber: 2.6 Consensus size: 24
700939 ATAAATGAAT
700949 GAACATAAACGAACATAACCGAAC
1 GAACATAAACGAACATAACCGAAC
700973 GAACATAAACGAACATAACCGAAC
1 GAACATAAACGAACATAACCGAAC
700997 GAACATAAACGAAC
1 GAACATAAACGAAC
701011 GTTCAGGAAC
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 38 1.00
ACGTcount: A:0.55, C:0.24, G:0.13, T:0.08
Consensus pattern (24 bp):
GAACATAAACGAACATAACCGAAC
Found at i:710226 original size:40 final size:40
Alignment explanation
Indices: 710182--710673 Score: 718
Period size: 40 Copynumber: 12.3 Consensus size: 40
710172 ATTTAATACG
*
710182 GAAGATTTTATCTCATTCAAGATTGTTTTTCCTTGAAACA
1 GAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAACA
*
710222 GAAGATTTTATCTCATTCAAGATTGTTTTTCCTTGAAACA
1 GAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAACA
*
710262 TAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAACA
1 GAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAACA
* * ** *
710302 TAAGATATTATCTTGCTCAAGATTGTTTTTCCTTGAAATA
1 GAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAACA
710342 GAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAACA
1 GAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAACA
* * *
710382 AAAGATTTTATCTCGCTCAAGATTATTTTTCCTTGAAACA
1 GAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAACA
* *
710422 GAAGATTTTATCTCGCTCAATATTG-TTTTCCTTGAAACA
1 GAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAACA
*
710461 TAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAACA
1 GAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAACA
* *
710501 TAAGATTTTATCTCACTCAAGATTATTTTTCCTTGAAACA
1 GAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAACA
* *
710541 GAAGATTTTATCTAACTTAAGATTGTTTTTCCTTGAAACA
1 GAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAACA
* * *
710581 TAAGATTTTATTTCGCTCAAGATTGTTTTTCCTTGAAACA
1 GAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAACA
* * * * * *
710621 AAAGATTTTATCTCGCTTAAGATAG-TTTCCCTCGAAACA
1 GAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAACA
*
710660 AAAGATTTTATCTC
1 GAAGATTTTATCTC
710674 GCTTGAGATA
Statistics
Matches: 415, Mismatches: 36, Indels: 3
0.91 0.08 0.01
Matches are distributed among these distances:
39 62 0.15
40 353 0.85
ACGTcount: A:0.31, C:0.16, G:0.11, T:0.42
Consensus pattern (40 bp):
GAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAACA
Found at i:710266 original size:23 final size:23
Alignment explanation
Indices: 710240--710307 Score: 60
Period size: 23 Copynumber: 3.2 Consensus size: 23
710230 TATCTCATTC
710240 AAGATTGTTTTTCCTTGAAACAT
1 AAGATTGTTTTTCCTTGAAACAT
* *
710263 AAGA-T-TTTAT-C-T--CAC-T
1 AAGATTGTTTTTCCTTGAAACAT
710279 CAAGATTGTTTTTCCTTGAAACAT
1 -AAGATTGTTTTTCCTTGAAACAT
710303 AAGAT
1 AAGAT
710308 ATTATCTTGC
Statistics
Matches: 33, Mismatches: 4, Indels: 16
0.62 0.08 0.30
Matches are distributed among these distances:
16 1 0.03
17 6 0.18
18 1 0.03
19 5 0.15
20 2 0.06
21 5 0.15
22 1 0.03
23 11 0.33
24 1 0.03
ACGTcount: A:0.32, C:0.15, G:0.12, T:0.41
Consensus pattern (23 bp):
AAGATTGTTTTTCCTTGAAACAT
Found at i:710505 original size:23 final size:22
Alignment explanation
Indices: 710479--710594 Score: 65
Period size: 23 Copynumber: 5.5 Consensus size: 22
710469 TATCTCACTC
710479 AAGATTGTTTTTCCTTGAAACAT
1 AAGATT-TTTTTCCTTGAAACAT
* *
710502 AAGA-TTTTAT-C-T--CAC-T
1 AAGATTTTTTTCCTTGAAACAT
*
710518 CAAGATTATTTTTCCTTGAAACAG
1 -AAGATT-TTTTTCCTTGAAACAT
* *
710542 AAGA-TTTTAT-C-T--AACTT
1 AAGATTTTTTTCCTTGAAACAT
710559 AAGATTGTTTTTCCTTGAAACAT
1 AAGATT-TTTTTCCTTGAAACAT
710582 AAGATTTTATTTC
1 AAGATTTT-TTTC
710595 GCTCAAGATT
Statistics
Matches: 68, Mismatches: 10, Indels: 30
0.63 0.09 0.28
Matches are distributed among these distances:
16 1 0.01
17 13 0.19
18 2 0.03
19 10 0.15
20 4 0.06
21 10 0.15
22 4 0.06
23 24 0.35
ACGTcount: A:0.32, C:0.14, G:0.10, T:0.44
Consensus pattern (22 bp):
AAGATTTTTTTCCTTGAAACAT
Found at i:710524 original size:199 final size:199
Alignment explanation
Indices: 710183--710673 Score: 784
Period size: 199 Copynumber: 2.5 Consensus size: 199
710173 TTTAATACGG
** **
710183 AAGATTTTATCTCATTCAAGATTGTTTTTCCTTGAAACAGAAGATTTTATCTCATTCAAGATTGT
1 AAGATTTTATCTCGCTCAAGATTGTTTTTCCTTGAAACAGAAGATTTTATCTCGCTCAAGATTG-
710248 TTTTCCTTGAAACATAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAACATAAGATATTAT
65 TTTTCCTTGAAACATAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAACATAAGATATTAT
** * * *
710313 CTTGCTCAAGATTGTTTTTCCTTGAAATAGAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGA
130 CTCACTCAAGATTATTTTTCCTTGAAACAGAAGATTTTATCTAACTCAAGATTGTTTTTCCTTGA
710378 AACAA
195 AACAA
* *
710383 AAGATTTTATCTCGCTCAAGATTATTTTTCCTTGAAACAGAAGATTTTATCTCGCTCAATATTGT
1 AAGATTTTATCTCGCTCAAGATTGTTTTTCCTTGAAACAGAAGATTTTATCTCGCTCAAGATTGT
*
710448 TTTCCTTGAAACATAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAACATAAGATTTTATC
66 TTTCCTTGAAACATAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAACATAAGATATTATC
*
710513 TCACTCAAGATTATTTTTCCTTGAAACAGAAGATTTTATCTAACTTAAGATTGTTTTTCCTTGAA
131 TCACTCAAGATTATTTTTCCTTGAAACAGAAGATTTTATCTAACTCAAGATTGTTTTTCCTTGAA
*
710578 ACAT
196 ACAA
* * * *
710582 AAGATTTTATTTCGCTCAAGATTGTTTTTCCTTGAAACAAAAGATTTTATCTCGCTTAAGATAGT
1 AAGATTTTATCTCGCTCAAGATTGTTTTTCCTTGAAACAGAAGATTTTATCTCGCTCAAGATTGT
* * *
710647 TTCCCTCGAAACAAAAGATTTTATCTC
66 TTTCCTTGAAACATAAGATTTTATCTC
710674 GCTTGAGATA
Statistics
Matches: 268, Mismatches: 23, Indels: 1
0.92 0.08 0.00
Matches are distributed among these distances:
199 210 0.78
200 58 0.22
ACGTcount: A:0.31, C:0.16, G:0.11, T:0.42
Consensus pattern (199 bp):
AAGATTTTATCTCGCTCAAGATTGTTTTTCCTTGAAACAGAAGATTTTATCTCGCTCAAGATTGT
TTTCCTTGAAACATAAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAACATAAGATATTATC
TCACTCAAGATTATTTTTCCTTGAAACAGAAGATTTTATCTAACTCAAGATTGTTTTTCCTTGAA
ACAA
Found at i:710716 original size:39 final size:39
Alignment explanation
Indices: 710183--710735 Score: 586
Period size: 40 Copynumber: 13.9 Consensus size: 39
710173 TTTAATACGG
** * *
710183 AAGATTTTATCTCATTCAAGATTGTTTTTCCTTGAAACAG
1 AAGATTTTATCTCGCTCAAGATAG-TTTTCCTTGAAACAA
** * *
710223 AAGATTTTATCTCATTCAAGATTGTTTTTCCTTGAAACAT
1 AAGATTTTATCTCGCTCAAGATAG-TTTTCCTTGAAACAA
* * *
710263 AAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAACAT
1 AAGATTTTATCTCGCTCAAGATAG-TTTTCCTTGAAACAA
* * * * *
710303 AAGATATTATCTTGCTCAAGATTGTTTTTCCTTGAAATAG
1 AAGATTTTATCTCGCTCAAGATAG-TTTTCCTTGAAACAA
* *
710343 AAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAACAA
1 AAGATTTTATCTCGCTCAAGATAG-TTTTCCTTGAAACAA
* *
710383 AAGATTTTATCTCGCTCAAGATTATTTTTCCTTGAAACAG
1 AAGATTTTATCTCGCTCAAGA-TAGTTTTCCTTGAAACAA
* * *
710423 AAGATTTTATCTCGCTCAATATTGTTTTCCTTGAAACAT
1 AAGATTTTATCTCGCTCAAGATAGTTTTCCTTGAAACAA
* * *
710462 AAGATTTTATCTCACTCAAGATTGTTTTTCCTTGAAACAT
1 AAGATTTTATCTCGCTCAAGATAG-TTTTCCTTGAAACAA
* * *
710502 AAGATTTTATCTCACTCAAGATTATTTTTCCTTGAAACAG
1 AAGATTTTATCTCGCTCAAGA-TAGTTTTCCTTGAAACAA
** * * *
710542 AAGATTTTATCTAACTTAAGATTGTTTTTCCTTGAAACAT
1 AAGATTTTATCTCGCTCAAGATAG-TTTTCCTTGAAACAA
* *
710582 AAGATTTTATTTCGCTCAAGATTGTTTTTCCTTGAAACAA
1 AAGATTTTATCTCGCTCAAGATAG-TTTTCCTTGAAACAA
* * *
710622 AAGATTTTATCTCGCTTAAGATAGTTTCCCTCGAAACAA
1 AAGATTTTATCTCGCTCAAGATAGTTTTCCTTGAAACAA
** * *
710661 AAGATTTTATCTCGCTTGAGATAGTTTCCCTCGAAACAA
1 AAGATTTTATCTCGCTCAAGATAGTTTTCCTTGAAACAA
* **
710700 AATATTTTATCTCGCTTGAGATAG-TTTCTCTTGAAA
1 AAGATTTTATCTCGCTCAAGATAGTTTTC-CTTGAAA
710736 TAAATTGTCT
Statistics
Matches: 464, Mismatches: 44, Indels: 11
0.89 0.08 0.02
Matches are distributed among these distances:
38 3 0.01
39 118 0.25
40 341 0.73
41 2 0.00
ACGTcount: A:0.31, C:0.16, G:0.12, T:0.41
Consensus pattern (39 bp):
AAGATTTTATCTCGCTCAAGATAGTTTTCCTTGAAACAA
Found at i:710752 original size:34 final size:35
Alignment explanation
Indices: 710675--710844 Score: 137
Period size: 36 Copynumber: 4.7 Consensus size: 35
710665 TTTTATCTCG
* * **
710675 CTTGAGATAGTTTCCCTCGAAACAAAATATTTTATCTCG
1 CTTGAGATAGTTTCCCTTGAAAC--AA-A-TTTGTCTTA
* * *
710714 CTTGAGATAGTTTCTCTTGAAATAAA-TTGTCTTT
1 CTTGAGATAGTTTCCCTTGAAACAAATTTGTCTTA
* *
710748 CTTGAGATAGTTTCCCTCGAAACAAATTTAGT-TTCC
1 CTTGAGATAGTTTCCCTTGAAACAAATTT-GTCTT-A
* * * *
710784 CTTGAGACAATTTCCCCTGAAACAAATTTTGTCTCA
1 CTTGAGATAGTTTCCCTTGAAACAAA-TTTGTCTTA
*
710820 CTTGAGATAGTTTCTCTTGAAACAA
1 CTTGAGATAGTTTCCCTTGAAACAA
710845 GTTTTTGATA
Statistics
Matches: 106, Mismatches: 20, Indels: 13
0.76 0.14 0.09
Matches are distributed among these distances:
34 28 0.26
35 4 0.04
36 48 0.45
37 6 0.06
39 20 0.19
ACGTcount: A:0.29, C:0.19, G:0.14, T:0.38
Consensus pattern (35 bp):
CTTGAGATAGTTTCCCTTGAAACAAATTTGTCTTA
Found at i:710798 original size:36 final size:36
Alignment explanation
Indices: 710627--710844 Score: 169
Period size: 39 Copynumber: 6.0 Consensus size: 36
710617 AACAAAAGAT
* *
710627 TTTA-TCTCGCTTAAGATAGTTTCCCTCGAAACAAAAGA
1 TTTAGTCTCACTTGAGATAGTTTCCCTCGAAAC--AA-A
*
710665 TTTTA-TCTCGCTTGAGATAGTTTCCCTCGAAACAAAATA
1 -TTTAGTCTCACTTGAGATAGTTTCCCTCGAAAC--AA-A
* * * *
710704 TTTTA-TCTCGCTTGAGATAGTTTCTCTTGAAATAAA
1 -TTTAGTCTCACTTGAGATAGTTTCCCTCGAAACAAA
**
710740 -TT-GTCTTTCTTGAGATAGTTTCCCTCGAAACAAA
1 TTTAGTCTCACTTGAGATAGTTTCCCTCGAAACAAA
* * * *
710774 TTTAGTTTCCCTTGAGACAATTTCCC-CTGAAACAAA
1 TTTAGTCTCACTTGAGATAGTTTCCCTC-GAAACAAA
* * *
710810 TTTTGTCTCACTTGAGATAGTTTCTCTTGAAACAA
1 TTTAGTCTCACTTGAGATAGTTTCCCTCGAAACAA
710845 GTTTTTGATA
Statistics
Matches: 152, Mismatches: 22, Indels: 13
0.81 0.12 0.07
Matches are distributed among these distances:
34 28 0.18
35 3 0.02
36 53 0.35
37 2 0.01
39 66 0.43
ACGTcount: A:0.29, C:0.20, G:0.13, T:0.38
Consensus pattern (36 bp):
TTTAGTCTCACTTGAGATAGTTTCCCTCGAAACAAA
Found at i:710925 original size:36 final size:36
Alignment explanation
Indices: 710857--711054 Score: 119
Period size: 37 Copynumber: 5.4 Consensus size: 36
710847 TTTTGATACA
* * *
710857 GTTTCTCTTAAAA-CAAAGTTTTGTCTCCCTTGAGATG
1 GTTTTTCTTAAAACCAAA--TTCGTCTCACTTGAGATG
* * **
710894 GTTTTTCTTAAAACCAACTTCGTCTCGCTTGAGACAA
1 GTTTTTCTTAAAACCAAATTCGTCTCACTTGAGA-TG
* ** * * *** *
710931 CTTTCCCTTGAAACAAAATGAATGTCACTTGAGATG
1 GTTTTTCTTAAAACCAAATTCGTCTCACTTGAGATG
* * ** * *
710967 GTTTTTCTTAAAACCTACTTCGTCTTGCTTAAGATA
1 GTTTTTCTTAAAACCAAATTCGTCTCACTTGAGATG
* * **
711003 GTTTTTCTTTGAAACAAAATTTATCTCACTTGAGATG
1 GTTTTTC-TTAAAACCAAATTCGTCTCACTTGAGATG
711040 GTTTTTCTTAAAACC
1 GTTTTTCTTAAAACC
711055 CTTGAGACAA
Statistics
Matches: 112, Mismatches: 46, Indels: 7
0.68 0.28 0.04
Matches are distributed among these distances:
36 48 0.43
37 61 0.54
38 3 0.03
ACGTcount: A:0.28, C:0.19, G:0.14, T:0.39
Consensus pattern (36 bp):
GTTTTTCTTAAAACCAAATTCGTCTCACTTGAGATG
Found at i:711015 original size:73 final size:73
Alignment explanation
Indices: 710880--711054 Score: 242
Period size: 73 Copynumber: 2.4 Consensus size: 73
710870 CAAAGTTTTG
* *
710880 TCTCCCTTGAGATGGTTTTTCTTAAAACCAACTTCGTCTCGCTTGAGACAACTTTCCCTTGAAAC
1 TCTCACTTGAGATGGTTTTTCTTAAAACCAACTTCGTCTCGCTTAAGACAACTTTCCCTTGAAAC
710945 AAAATGAA
66 AAAATGAA
* * * * ** * *
710953 TGTCACTTGAGATGGTTTTTCTTAAAACCTACTTCGTCTTGCTTAAGATAGTTTTTCTTTGAAAC
1 TCTCACTTGAGATGGTTTTTCTTAAAACCAACTTCGTCTCGCTTAAGACAACTTTCCCTTGAAAC
**
711018 AAAATTTA
66 AAAATGAA
711026 TCTCACTTGAGATGGTTTTTCTTAAAACC
1 TCTCACTTGAGATGGTTTTTCTTAAAACC
711055 CTTGAGACAA
Statistics
Matches: 89, Mismatches: 13, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
73 89 1.00
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.39
Consensus pattern (73 bp):
TCTCACTTGAGATGGTTTTTCTTAAAACCAACTTCGTCTCGCTTAAGACAACTTTCCCTTGAAAC
AAAATGAA
Found at i:714237 original size:17 final size:17
Alignment explanation
Indices: 714211--714322 Score: 81
Period size: 17 Copynumber: 6.5 Consensus size: 17
714201 AAGCAAGAAG
714211 AAAATAAAAATAGATA-A
1 AAAAT-AAAATAGATATA
714228 ATAAATAAAATAGATATA
1 A-AAATAAAATAGATATA
*
714246 AAAAT-AAA-AGCA-AGA
1 AAAATAAAATAG-ATATA
*
714261 AGAAATTAAAAACAGATA-A
1 A-AAA-T-AAAATAGATATA
*
714280 ATAAATAAAATATATATA
1 A-AAATAAAATAGATATA
*
714298 AAAATAAAATATATATA
1 AAAATAAAATAGATATA
*
714315 AATATAAA
1 AAAATAAA
714323 TACTAATGTA
Statistics
Matches: 80, Mismatches: 5, Indels: 20
0.76 0.05 0.19
Matches are distributed among these distances:
15 5 0.06
16 7 0.09
17 47 0.59
18 9 0.11
19 9 0.11
20 3 0.04
ACGTcount: A:0.71, C:0.02, G:0.05, T:0.22
Consensus pattern (17 bp):
AAAATAAAATAGATATA
Found at i:714252 original size:52 final size:52
Alignment explanation
Indices: 714195--714306 Score: 197
Period size: 52 Copynumber: 2.2 Consensus size: 52
714185 ATAAATAAAT
*
714195 AAATAAAAGCAAGAAGAAAATAAAAATAGATAAATAAATAAAATAGATATAA
1 AAATAAAAGCAAGAAGAAAATAAAAACAGATAAATAAATAAAATAGATATAA
* *
714247 AAATAAAAGCAAGAAGAAATTAAAAACAGATAAATAAATAAAATATATATAA
1 AAATAAAAGCAAGAAGAAAATAAAAACAGATAAATAAATAAAATAGATATAA
714299 AAATAAAA
1 AAATAAAA
714307 TATATATAAA
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
52 57 1.00
ACGTcount: A:0.71, C:0.03, G:0.08, T:0.18
Consensus pattern (52 bp):
AAATAAAAGCAAGAAGAAAATAAAAACAGATAAATAAATAAAATAGATATAA
Found at i:714348 original size:32 final size:30
Alignment explanation
Indices: 714276--714349 Score: 78
Period size: 32 Copynumber: 2.3 Consensus size: 30
714266 TTAAAAACAG
714276 ATAAATAAATAAAATATATATAAAAATAAA
1 ATAAATAAATAAAATATATATAAAAATAAA
* *
714306 ATATATATAAATATAAATACTA-ATGTAAAATGAA
1 ATA-A-ATAAATA-AAATA-TATAT-AAAAATAAA
714340 ATAAATAAAT
1 ATAAATAAAT
714350 TAAGGAAGAA
Statistics
Matches: 37, Mismatches: 2, Indels: 8
0.79 0.04 0.17
Matches are distributed among these distances:
30 3 0.08
31 1 0.03
32 13 0.35
33 8 0.22
34 12 0.32
ACGTcount: A:0.66, C:0.01, G:0.03, T:0.30
Consensus pattern (30 bp):
ATAAATAAATAAAATATATATAAAAATAAA
Found at i:714797 original size:17 final size:17
Alignment explanation
Indices: 714775--714817 Score: 59
Period size: 17 Copynumber: 2.5 Consensus size: 17
714765 AACAAATAAC
*
714775 ATAATATATATATATAT
1 ATAATATAAATATATAT
*
714792 ATAATATAAATATATAA
1 ATAATATAAATATATAT
*
714809 ATATTATAA
1 ATAATATAA
714818 TTGTAAGATT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 23 1.00
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
ATAATATAAATATATAT
Found at i:715658 original size:86 final size:83
Alignment explanation
Indices: 715522--715846 Score: 325
Period size: 85 Copynumber: 3.8 Consensus size: 83
715512 ATGTGTCATC
* * * * ** *
715522 GAGCTGAATGGAACCAAACTCGATA-GTTTTTGTTGACATATAACTTTTCTCTACTTAAGCTATG
1 GAGCTGAATGTAATCGAACTCGA-AGGTTTTTGTTGACAGATAACCCTTCTC-ACTTGAGCTATG
* * *
715586 CTGCAAATTTGGCATGCCCTT
64 CTGTAAATTT-GAATGCCTTT
* *
715607 GAGTTGAATGTAATCGAACTCGAAGGTCTTTTGTTAACAGATAACCCTTCTCACCTTGAGCTATG
1 GAGCTGAATGTAATCGAACTCGAAGGT-TTTTGTTGACAGATAACCCTTCTCA-CTTGAGCTATG
715672 CTGTAAATTT-AATGTACCTTT
64 CTGTAAATTTGAATG--CCTTT
* * * *
715693 GAGCT-AAGTGCAATCGAACTCGAAGGTTTTGGTTGACAGATAACCCTTCTCGCCTTGAGTTATG
1 GAGCTGAA-TGTAATCGAACTCGAAGGTTTTTGTTGACAGATAACCCTTCTC-ACTTGAGCTATG
*
715757 CTGTAAATTTGATATGCTTTT
64 CTGTAAATTTGA-ATGCCTTT
* ** * *
715778 GAGCTGAATGTAATCGAACTCGAAGGTTTTTG-TGACAGATAGCTTTTCTTCACTTAAGCTATAC
1 GAGCTGAATGTAATCGAACTCGAAGGTTTTTGTTGACAGATAACCCTTC-TCACTTGAGCTATGC
715842 TGTAA
65 TGTAA
715847 TAGGTTGGGA
Statistics
Matches: 201, Mismatches: 28, Indels: 23
0.80 0.11 0.09
Matches are distributed among these distances:
84 31 0.15
85 99 0.49
86 68 0.34
87 3 0.01
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.35
Consensus pattern (83 bp):
GAGCTGAATGTAATCGAACTCGAAGGTTTTTGTTGACAGATAACCCTTCTCACTTGAGCTATGCT
GTAAATTTGAATGCCTTT
Found at i:716103 original size:124 final size:124
Alignment explanation
Indices: 715912--716145 Score: 301
Period size: 124 Copynumber: 1.9 Consensus size: 124
715902 GTCGATCTGT
* * * * * * * *
715912 TGGGCATGATATCTTTTGTTGTGAAGTTGAAATCGTGGATGACTGCTTCGTCTTAAAGTTGAGCT
1 TGGGCACGATATCCTTCGTCGTGAAGTTGAAATCATGGATGACTGCGTCGTCTTAAAGTTAAACT
* * *
715977 TTGAGTTGGATATCCTTCATTGTGAAGTTAAAATCCAAACTAGAGATGGATGATTCTTG
66 TTGAATTAGATATCCTTCATCGTGAAGTTAAAATCCAAACTAGAGATGGATGATTCTTG
* *
716036 TGGGCACGATATCCTTCGTCGTGAAGTTGAAATCATGGATGGCT-CAGTCGT-TGTGAAGTTAAA
1 TGGGCACGATATCCTTCGTCGTGAAGTTGAAATCATGGATGACTGC-GTCGTCT-TAAAGTTAAA
* *
716099 CTTTGAATTAGATATCCTTCATCGTGAAGTTGAAATCCAATCTAGAG
64 CTTTGAATTAGATATCCTTCATCGTGAAGTTAAAATCCAAACTAGAG
716146 TTGTATTGCT
Statistics
Matches: 93, Mismatches: 15, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
123 2 0.02
124 91 0.98
ACGTcount: A:0.27, C:0.14, G:0.24, T:0.35
Consensus pattern (124 bp):
TGGGCACGATATCCTTCGTCGTGAAGTTGAAATCATGGATGACTGCGTCGTCTTAAAGTTAAACT
TTGAATTAGATATCCTTCATCGTGAAGTTAAAATCCAAACTAGAGATGGATGATTCTTG
Found at i:716841 original size:32 final size:32
Alignment explanation
Indices: 716787--716864 Score: 75
Period size: 32 Copynumber: 2.4 Consensus size: 32
716777 GCATCAGGGT
* * * **
716787 GTTGAATCCCCAAAGATGCCCCATTATTCGAC
1 GTTGAATCTCCAAAAATACCCCAACATTCGAC
* * *
716819 GTTGAATCTCTAAAAATACCCCAACATTTGAT
1 GTTGAATCTCCAAAAATACCCCAACATTCGAC
*
716851 GTTGAATCTTCAAA
1 GTTGAATCTCCAAA
716865 CATGCCCCCA
Statistics
Matches: 36, Mismatches: 10, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.33, C:0.24, G:0.13, T:0.29
Consensus pattern (32 bp):
GTTGAATCTCCAAAAATACCCCAACATTCGAC
Found at i:719328 original size:23 final size:23
Alignment explanation
Indices: 719302--719348 Score: 94
Period size: 23 Copynumber: 2.0 Consensus size: 23
719292 AATCTTTATT
719302 GGGACAAAAGTGTTATTTCTTAA
1 GGGACAAAAGTGTTATTTCTTAA
719325 GGGACAAAAGTGTTATTTCTTAA
1 GGGACAAAAGTGTTATTTCTTAA
719348 G
1 G
719349 AGATAAAAAC
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
23 24 1.00
ACGTcount: A:0.34, C:0.09, G:0.23, T:0.34
Consensus pattern (23 bp):
GGGACAAAAGTGTTATTTCTTAA
Found at i:719356 original size:23 final size:23
Alignment explanation
Indices: 719304--719356 Score: 88
Period size: 23 Copynumber: 2.3 Consensus size: 23
719294 TCTTTATTGG
*
719304 GACAAAAGTGTTATTTCTTAAGG
1 GACAAAAGTGTTATTTCTTAAGA
719327 GACAAAAGTGTTATTTCTTAAGA
1 GACAAAAGTGTTATTTCTTAAGA
*
719350 GATAAAA
1 GACAAAA
719357 ACATCCTAAA
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 28 1.00
ACGTcount: A:0.42, C:0.08, G:0.19, T:0.32
Consensus pattern (23 bp):
GACAAAAGTGTTATTTCTTAAGA
Found at i:720930 original size:16 final size:17
Alignment explanation
Indices: 720909--720941 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
720899 ATACCTTATT
720909 TCTTACT-TGATATGTA
1 TCTTACTATGATATGTA
720925 TCTTACTAGTGATATGT
1 TCTTACTA-TGATATGT
720942 CTGATTCGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
16 7 0.47
18 8 0.53
ACGTcount: A:0.24, C:0.12, G:0.15, T:0.48
Consensus pattern (17 bp):
TCTTACTATGATATGTA
Found at i:721312 original size:18 final size:17
Alignment explanation
Indices: 721291--721351 Score: 68
Period size: 18 Copynumber: 3.4 Consensus size: 17
721281 AGAAAGAAGA
721291 AAATAAAAATAGATAAAT
1 AAAT-AAAATAGATAAAT
*
721309 AAATAAAATAGATATAAA
1 AAATAAAATAGATA-AAT
* *
721327 AAATAATATATATAAAT
1 AAATAAAATAGATAAAT
721344 GAAATAAA
1 -AAATAAA
721352 TAAATTAAAG
Statistics
Matches: 36, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
17 12 0.33
18 24 0.67
ACGTcount: A:0.70, C:0.00, G:0.05, T:0.25
Consensus pattern (17 bp):
AAATAAAATAGATAAAT
Found at i:721349 original size:36 final size:36
Alignment explanation
Indices: 721295--721390 Score: 101
Period size: 36 Copynumber: 2.7 Consensus size: 36
721285 AGAAGAAAAT
* *
721295 AAAA-ATAGATAAATAAATAAAATAGATATAAA-AA-
1 AAAATATATATAAATAAATAAAATAAAT-TAAAGAAG
*
721329 ATAATATATATAAATGAAAT-AAATAAATTAAAGAAG
1 AAAATATATATAAAT-AAATAAAATAAATTAAAGAAG
*
721365 AAAATATATATATATATAATAAAATA
1 AAAATATATATAAATA-AATAAAATA
721391 TAATATTTAA
Statistics
Matches: 51, Mismatches: 5, Indels: 9
0.78 0.08 0.14
Matches are distributed among these distances:
34 7 0.14
35 19 0.37
36 20 0.39
37 5 0.10
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (36 bp):
AAAATATATATAAATAAATAAAATAAATTAAAGAAG
Found at i:721349 original size:40 final size:41
Alignment explanation
Indices: 721258--721395 Score: 123
Period size: 40 Copynumber: 3.5 Consensus size: 41
721248 GGTAAAAATA
*
721258 ATATATACATAATAATAAATAAAAGAAAGAAGAAAATA-A-A-
1 ATATATA-ATAA-AATAAATAAAATAAAGAAGAAAATATATAT
* *
721298 A-ATA-GAT-AAATAAATAAAATAGATATAA-AAAATA-ATAT
1 ATATATAATAAAATAAATAAAATA-A-AGAAGAAAATATATAT
* *
721336 ATATA-AATGAAATAAATAAATTAAAGAAGAAAATATATAT
1 ATATATAATAAAATAAATAAAATAAAGAAGAAAATATATAT
721376 ATATATAATAAAATATAATA
1 ATATATAATAAAATA-AATA
721396 TTTAAATAGA
Statistics
Matches: 81, Mismatches: 7, Indels: 18
0.76 0.07 0.17
Matches are distributed among these distances:
35 12 0.15
36 9 0.11
37 6 0.07
38 4 0.05
39 15 0.19
40 23 0.28
41 8 0.10
42 4 0.05
ACGTcount: A:0.67, C:0.01, G:0.06, T:0.26
Consensus pattern (41 bp):
ATATATAATAAAATAAATAAAATAAAGAAGAAAATATATAT
Found at i:721350 original size:9 final size:8
Alignment explanation
Indices: 721297--721356 Score: 50
Period size: 9 Copynumber: 7.0 Consensus size: 8
721287 AAGAAAATAA
*
721297 AAATAGAT
1 AAATAAAT
721305 AAATAAAT
1 AAATAAAT
721313 AAAATAGATAT
1 -AAATA-A-AT
721324 AAA-AAAT
1 AAATAAAT
*
721331 AATATATAT
1 AA-ATAAAT
721340 AAATGAAAT
1 AAAT-AAAT
721349 AAATAAAT
1 AAATAAAT
721357 TAAAGAAGAA
Statistics
Matches: 43, Mismatches: 3, Indels: 12
0.74 0.05 0.21
Matches are distributed among these distances:
7 4 0.09
8 15 0.35
9 18 0.42
10 4 0.09
11 2 0.05
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (8 bp):
AAATAAAT
Found at i:721360 original size:5 final size:4
Alignment explanation
Indices: 721297--721356 Score: 50
Period size: 4 Copynumber: 14.0 Consensus size: 4
721287 AAGAAAATAA
* *
721297 AAAT AGAT AAAT AAAT AAAAT AGATAT AAA- AAAT AATAT ATAT AAAT
1 AAAT AAAT AAAT AAAT -AAAT A-A-AT AAAT AAAT AA-AT AAAT AAAT
721344 GAAAT AAAT AAAT
1 -AAAT AAAT AAAT
721357 TAAAGAAGAA
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
3 3 0.07
4 27 0.59
5 13 0.28
6 3 0.07
ACGTcount: A:0.68, C:0.00, G:0.05, T:0.27
Consensus pattern (4 bp):
AAAT
Found at i:721414 original size:21 final size:20
Alignment explanation
Indices: 721250--721414 Score: 62
Period size: 21 Copynumber: 8.4 Consensus size: 20
721240 AAAATGATGG
*
721250 TAAAAATAATATATACATAA
1 TAAAAATAATATATAAATAA
* *
721270 TAATAAATAA-A-AGAAAGAA
1 TAA-AAATAATATATAAATAA
* * *
721289 -GAAAATAA-AAATAGATAA
1 TAAAAATAATATATAAATAA
* * * *
721307 -ATAAATAAAATAGATATAA
1 TAAAAATAATATATAAATAA
*
721326 AAAATAAT-ATATATAAATGAA
1 TAAA-AATAATATATAAAT-AA
* *
721347 -ATAAATAA-AT-TAAAGAA
1 TAAAAATAATATATAAATAA
* *
721364 -GAAAATATATATATATATAA
1 TAAAAATA-ATATATAAATAA
*
721384 TAAAATATAATATTTAAATAGA
1 TAAAA-ATAATATATAAATA-A
721406 TAAAAATAA
1 TAAAAATAA
721415 GAAATTAAAA
Statistics
Matches: 107, Mismatches: 25, Indels: 25
0.68 0.16 0.16
Matches are distributed among these distances:
17 14 0.13
18 17 0.16
19 19 0.18
20 21 0.20
21 27 0.25
22 9 0.08
ACGTcount: A:0.67, C:0.01, G:0.05, T:0.27
Consensus pattern (20 bp):
TAAAAATAATATATAAATAA
Found at i:726322 original size:31 final size:31
Alignment explanation
Indices: 726284--726368 Score: 102
Period size: 32 Copynumber: 2.7 Consensus size: 31
726274 TAAAGTGACC
*
726284 CTTGGGTAGGCTCTATGG-CCCTGAGATCTTT
1 CTTGGGTAGGCTCTATGGCCCCT-AGAACTTT
*
726315 CTTGGGTAGGCCTCCATGGCCCCTAGAACTTT
1 CTTGGGTAGG-CTCTATGGCCCCTAGAACTTT
*
726347 TTTGGGTAGGCTCTCA-GGCCCC
1 CTTGGGTAGGCTCT-ATGGCCCC
726369 AAGGTGCCCC
Statistics
Matches: 47, Mismatches: 4, Indels: 6
0.82 0.07 0.11
Matches are distributed among these distances:
31 19 0.40
32 24 0.51
33 4 0.09
ACGTcount: A:0.13, C:0.28, G:0.28, T:0.31
Consensus pattern (31 bp):
CTTGGGTAGGCTCTATGGCCCCTAGAACTTT
Found at i:727680 original size:453 final size:451
Alignment explanation
Indices: 726816--727719 Score: 1628
Period size: 453 Copynumber: 2.0 Consensus size: 451
726806 CGGAAGCTCG
* *
726816 AATCGACAACCGGAACGGTGCAAAGAGGGGTCAGAATGGTTTTGTGTTTAGGGAGTAAAGAGATT
1 AATCGACAACCGGAACGGTGCAAAGAGGGGTCAGAACGGTTTTGTATTTAGGGAGTAAAGAGATT
*
726881 GAAAGATAGAGAATTGCACAGCGATTTATAGTGGTTTGACTTTCTCAATAAAAGTCTACGTCCAC
66 GAAAGATAGAGAATTGCACAGCGATTTATAGTGGTTCGACTTTCTCAATAAAAGTCTACGTCCAC
* *
726946 TACCTTAGCTCATCACCAAGGATTTTCTAACAAATTTACTAATTTGTTCTTTCTTTTGAGGATAA
131 TACCTTAGCTCATCACCAAGGATTTTCCAACAAATTCACTAATTTGTTCTTTCTTTTGAGGATAA
*
727011 AGAGTAACCTTACAAATTCCCTAGTTTTTTCAGGCTAAACTAGAACCTTTCCCTAGCTTTTACAC
196 AGAGTAACCTTACAAACTCCCTAGTTTTTTCAGGCTAAACTAGAACCTTTCCCTAGCTTTTACAC
*
727076 GGGATTAGCTAGAACCTTTCCCCTTTACAAAAGGATAAGAAATATAAACAAGAAAACCTCTCTAA
261 GGGATTAGCTAGAACATTTCCCCTTTACAAAAGGATAAGAAATATAAACAAGAAAACCTCTCTAA
727141 GGTAAGTGTTTACAAGATTGAGCTCACAAGAACAAAATATATACAAGAGAAAGATGAAATAAGAA
326 GGTAAGTGTTTACAAGATTGAGCTCACAAGAACAAAATATATACAAGAGAAAGATGAAATAAGAA
*
727206 TGAAAAACTCTTCTCTTGTGTTTGATTGCTTGGATAGTTGTTCTATTGCTTCTTCAAGTGT
391 TGAAAAACTCTTCTCTTGTGTTTGATTGCTTGGATAGTTGTTCTATTACTTCTTCAAGTGT
* * *
727267 AATCGATAACCGGAACGGTTTGCAAAGAGGGGTCGGAACGGTTTTGTATTTAGGGAGTAAGGAGA
1 AATCGACAACCGGAACGG--TGCAAAGAGGGGTCAGAACGGTTTTGTATTTAGGGAGTAAAGAGA
* *
727332 TTGAAAGATAGAGAATTGCACAGCGATTTATAGTGGTTCGACTTTCTCAATCAAAGTCTATGTCC
64 TTGAAAGATAGAGAATTGCACAGCGATTTATAGTGGTTCGACTTTCTCAATAAAAGTCTACGTCC
*
727397 ACTACCTTAGCTCCTCACCAAGGATTTTCCAACAAATTCACTAATTTGTTCTTTCTTTTGAGGAT
129 ACTACCTTAGCTCATCACCAAGGATTTTCCAACAAATTCACTAATTTGTTCTTTCTTTTGAGGAT
**
727462 AAAGAGTAACCTTACAAACTCCCTAGTTTTTTTGGGCTAAACTAGAACCTTTCCCTAGCTTTTAC
194 AAAGAGTAACCTTACAAACTCCCTAGTTTTTTCAGGCTAAACTAGAACCTTTCCCTAGCTTTTAC
*
727527 ACGGGATTAGCTAGAACATTTCCCCTTTACAAAAGGATAAGAAATGTAAACAAGAAAACCTCTCT
259 ACGGGATTAGCTAGAACATTTCCCCTTTACAAAAGGATAAGAAATATAAACAAGAAAACCTCTCT
*
727592 AAGGTAGGTGTTTACAAGATTGAGCTCACAAGAACAAAATATATACAAGAGAAAGATGAAATAAG
324 AAGGTAAGTGTTTACAAGATTGAGCTCACAAGAACAAAATATATACAAGAGAAAGATGAAATAAG
727657 AATGAAAAACTCTTCTCTTGTGTTTGATTGCTTGGATAGTTGTTCTATTACTTCTTCAAGTGT
389 AATGAAAAACTCTTCTCTTGTGTTTGATTGCTTGGATAGTTGTTCTATTACTTCTTCAAGTGT
727720 CCTTAGCTTG
Statistics
Matches: 433, Mismatches: 18, Indels: 2
0.96 0.04 0.00
Matches are distributed among these distances:
451 17 0.04
453 416 0.96
ACGTcount: A:0.33, C:0.17, G:0.19, T:0.31
Consensus pattern (451 bp):
AATCGACAACCGGAACGGTGCAAAGAGGGGTCAGAACGGTTTTGTATTTAGGGAGTAAAGAGATT
GAAAGATAGAGAATTGCACAGCGATTTATAGTGGTTCGACTTTCTCAATAAAAGTCTACGTCCAC
TACCTTAGCTCATCACCAAGGATTTTCCAACAAATTCACTAATTTGTTCTTTCTTTTGAGGATAA
AGAGTAACCTTACAAACTCCCTAGTTTTTTCAGGCTAAACTAGAACCTTTCCCTAGCTTTTACAC
GGGATTAGCTAGAACATTTCCCCTTTACAAAAGGATAAGAAATATAAACAAGAAAACCTCTCTAA
GGTAAGTGTTTACAAGATTGAGCTCACAAGAACAAAATATATACAAGAGAAAGATGAAATAAGAA
TGAAAAACTCTTCTCTTGTGTTTGATTGCTTGGATAGTTGTTCTATTACTTCTTCAAGTGT
Found at i:727859 original size:20 final size:21
Alignment explanation
Indices: 727829--727882 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
727819 GCTTGGAGCG
727829 TGGGAGAATCGGTA-CCCCTCA
1 TGGG-GAATCGGTACCCCCTCA
727850 TGGGGAATCGGTACCCCCTCA
1 TGGGGAATCGGTACCCCCTCA
727871 TGGGGAATCGGT
1 TGGGGAATCGGT
727883 TCCCTAAGTG
Statistics
Matches: 32, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
20 9 0.28
21 23 0.72
ACGTcount: A:0.20, C:0.26, G:0.33, T:0.20
Consensus pattern (21 bp):
TGGGGAATCGGTACCCCCTCA
Found at i:727941 original size:19 final size:21
Alignment explanation
Indices: 727917--727959 Score: 70
Period size: 21 Copynumber: 2.1 Consensus size: 21
727907 CCGTTAGACA
727917 GGGG-GAATCGGTACCCCCTG
1 GGGGAGAATCGGTACCCCCTG
*
727937 GGGGAGAATCTGTACCCCCTG
1 GGGGAGAATCGGTACCCCCTG
727958 GG
1 GG
727960 CAATTTGATA
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
20 4 0.19
21 17 0.81
ACGTcount: A:0.16, C:0.28, G:0.40, T:0.16
Consensus pattern (21 bp):
GGGGAGAATCGGTACCCCCTG
Found at i:731408 original size:20 final size:20
Alignment explanation
Indices: 731348--731411 Score: 74
Period size: 21 Copynumber: 3.1 Consensus size: 20
731338 CCGTTAGACA
* *
731348 GGGGGAAATCGGTACCCCCTG
1 GGGGGGAATCTGTA-CCCCTG
*
731369 GGGGGGAATCTGTTCTCCCTG
1 GGGGGGAATCTGTAC-CCCTG
*
731390 GGGGGGAATGTGTACCCCTG
1 GGGGGGAATCTGTACCCCTG
731410 GG
1 GG
731412 CAATCTGATT
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
20 8 0.22
21 29 0.78
ACGTcount: A:0.14, C:0.23, G:0.42, T:0.20
Consensus pattern (20 bp):
GGGGGGAATCTGTACCCCTG
Found at i:733742 original size:37 final size:37
Alignment explanation
Indices: 733648--733749 Score: 132
Period size: 37 Copynumber: 2.8 Consensus size: 37
733638 CATTTTCGTC
733648 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
* * * *
733685 TTGCTAGGATTCAAACTCCTAAAAATAGGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
* * * *
733722 CTACTAAGATTTAAATTCCTAAAGATAG
1 CTACTAGGATTCAAACTCCTAAAAATAG
733750 AATCCACAAA
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 55 1.00
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.29
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
Found at i:734148 original size:18 final size:17
Alignment explanation
Indices: 734109--734151 Score: 61
Period size: 18 Copynumber: 2.5 Consensus size: 17
734099 ATTATATGGA
734109 TATT-TTATTCATTTAT
1 TATTATTATTCATTTAT
*
734125 TTTTATTATTCATGTTAT
1 TATTATTATTCAT-TTAT
734143 TATTATTAT
1 TATTATTAT
734152 ATGTATATAT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
16 3 0.13
17 8 0.35
18 12 0.52
ACGTcount: A:0.26, C:0.05, G:0.02, T:0.67
Consensus pattern (17 bp):
TATTATTATTCATTTAT
Found at i:738495 original size:183 final size:183
Alignment explanation
Indices: 738187--738723 Score: 914
Period size: 183 Copynumber: 2.9 Consensus size: 183
738177 ATTAAATCCG
738187 TAAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGA
1 TAAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGA
*
738252 ATAGATTATGTTCAAACTATGACACTGCTCGGACACTTGGCAATTCGGTGTTTGCTCCACTGCTT
66 ATAGATTATGTTCAAACTATGACACTGCTCGGACACTTGGAAATTCGGTGTTTGCTCCACTGCTT
* * *
738317 TTGTCAAGCCAAAGACCTTGTGATGAGATGAACCCTTCAGTGATTTGTCCCTC
131 TTGTCAGGCCAAAGACTTTGTGATGAGATGAACCCTTCAGTGATTTGTCCCCC
* *
738370 TAAAGCTGAGCTATTCCACTAAGGCAATTTGTTATAGAGAAAACTCGAAAGCCCTGGCTTTATGA
1 TAAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGA
* *
738435 ATAGATTATGTTCAAACTATGACACTGCTCAGACACTTGGTAATTCGGTGTTTGCTCCACTGCTT
66 ATAGATTATGTTCAAACTATGACACTGCTCGGACACTTGGAAATTCGGTGTTTGCTCCACTGCTT
**
738500 TTGTCAGGCCAAAGACTTTGTGATGAGACAAACCCTTCAGTGATTTGTCCCCC
131 TTGTCAGGCCAAAGACTTTGTGATGAGATGAACCCTTCAGTGATTTGTCCCCC
* *
738553 TAAAGTTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTAGCTTTATGA
1 TAAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGA
** *
738618 ATAGATTACATTCAAA-TCATGACATTGCTCGGACACTTGGAAATTCGGTGTTTGCTCCACTGCT
66 ATAGATTATGTTCAAACT-ATGACACTGCTCGGACACTTGGAAATTCGGTGTTTGCTCCACTGCT
*
738682 TTTGTCAGGTCAAAGACTTTGTGATGAGATGAACCCTTCAGT
130 TTTGTCAGGCCAAAGACTTTGTGATGAGATGAACCCTTCAGT
738724 TAAACCTGAT
Statistics
Matches: 332, Mismatches: 21, Indels: 2
0.94 0.06 0.01
Matches are distributed among these distances:
182 1 0.00
183 331 1.00
ACGTcount: A:0.28, C:0.21, G:0.21, T:0.31
Consensus pattern (183 bp):
TAAAGCTGAGCTATTCCACTAAGGCAATTGGTTATAGAGGAAACTCGAAAGCCCTGGCTTTATGA
ATAGATTATGTTCAAACTATGACACTGCTCGGACACTTGGAAATTCGGTGTTTGCTCCACTGCTT
TTGTCAGGCCAAAGACTTTGTGATGAGATGAACCCTTCAGTGATTTGTCCCCC
Found at i:739921 original size:36 final size:34
Alignment explanation
Indices: 739881--739994 Score: 86
Period size: 36 Copynumber: 3.2 Consensus size: 34
739871 CACTCAAATT
739881 TGTTTTTCTTAAAACATACTTTATCTCACTTGAGAC
1 TGTTTTTCTTAAAACA-A-TTTATCTCACTTGAGAC
* * ** *
739917 TGTTTTTCTCGAAAGA-AGATTTATTTCACTCAAGAT
1 TGTTTTTCT-TAAA-ACA-ATTTATCTCACTTGAGAC
* *
739953 TGTTTTTCTTAAAACAAGATTTGTCTCGCTTGAGAC
1 TGTTTTTCTTAAAAC-A-ATTTATCTCACTTGAGAC
*
739989 CGTTTT
1 TGTTTT
739995 CACTCGAAAG
Statistics
Matches: 60, Mismatches: 14, Indels: 8
0.73 0.17 0.10
Matches are distributed among these distances:
34 1 0.02
35 3 0.05
36 50 0.83
37 5 0.08
38 1 0.02
ACGTcount: A:0.26, C:0.17, G:0.13, T:0.44
Consensus pattern (34 bp):
TGTTTTTCTTAAAACAATTTATCTCACTTGAGAC
Found at i:739956 original size:72 final size:75
Alignment explanation
Indices: 739865--740061 Score: 219
Period size: 72 Copynumber: 2.7 Consensus size: 75
739855 ATGCAGATGA
* * * * *
739865 TTATCTCACTCAA-ATTTGTTTTTCTTAAAACATACTTTATCTCACTTGAGACTGTTTT-TCTCG
1 TTATTTCACTCAAGA-TTGTTTTTCTTAAAACATAATTTATCTCGCTTGAGACCGTTTTCACTCG
739928 AAAGAA-G-AT
65 AAAGAAGGCAT
*
739937 TTATTTCACTCAAGATTGTTTTTCTTAAAACA-AGATTTGTCTCGCTTGAGACCGTTTTCACTCG
1 TTATTTCACTCAAGATTGTTTTTCTTAAAACATA-ATTTATCTCGCTTGAGACCGTTTTCACTCG
740001 AAAGAAGGCAT
65 AAAGAAGGCAT
** * * *
740012 TTCATTTCACTCAAGGCTGTTTTT-TTAAGA-ATATTTTATCTTGCTTGAGA
1 TT-ATTTCACTCAAGATTGTTTTTCTTAAAACATAATTTATCTCGCTTGAGA
740062 TAGTTTCCCA
Statistics
Matches: 106, Mismatches: 12, Indels: 12
0.82 0.09 0.09
Matches are distributed among these distances:
71 1 0.01
72 49 0.46
73 11 0.10
74 16 0.15
75 10 0.09
76 19 0.18
ACGTcount: A:0.27, C:0.17, G:0.13, T:0.42
Consensus pattern (75 bp):
TTATTTCACTCAAGATTGTTTTTCTTAAAACATAATTTATCTCGCTTGAGACCGTTTTCACTCGA
AAGAAGGCAT
Found at i:740098 original size:39 final size:39
Alignment explanation
Indices: 740055--740204 Score: 122
Period size: 39 Copynumber: 3.6 Consensus size: 39
740045 TTTTATCTTG
* *
740055 CTTGAGATAGTTTCCCACGAAACAGAAAATTTTGTCTCC
1 CTTGAGACAGTTTCCCTCGAAACAGAAAATTTTGTCTCC
* * * *
740094 CTTGAGACAATTTCTCTTGAAAACATTTCCCTTGAAAATTTTTTCTCTC
1 CTTGAGACAGTTTCCCTCG-AAACA--------GAAAATTTTGTCTC-C
*
740143 C-TGAGATAGTTTCCCTCGAAACAGAAAATTTTGTCTCC
1 CTTGAGACAGTTTCCCTCGAAACAGAAAATTTTGTCTCC
* *
740181 CTTGAGACAGTTTCTCTTGAAACA
1 CTTGAGACAGTTTCCCTCGAAACA
740205 TAAACATTGA
Statistics
Matches: 86, Mismatches: 14, Indels: 22
0.70 0.11 0.18
Matches are distributed among these distances:
38 2 0.02
39 46 0.53
40 5 0.06
47 5 0.06
48 26 0.30
49 2 0.02
ACGTcount: A:0.29, C:0.23, G:0.13, T:0.35
Consensus pattern (39 bp):
CTTGAGACAGTTTCCCTCGAAACAGAAAATTTTGTCTCC
Found at i:740290 original size:106 final size:103
Alignment explanation
Indices: 740110--740426 Score: 491
Period size: 106 Copynumber: 3.1 Consensus size: 103
740100 ACAATTTCTC
*
740110 TTGAAAACATTTCCCTTGAAA--ATTTTTTCTCTCCTGAGATAGTTTCCCTCGAAACAGAAAATT
1 TTGAAAACATTTCCCTTGAAATGATTTTTTCTCTCTTGAGATAGTTTCCCTCGAAACAGAAAATT
740173 TTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
66 TTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
740211 TTGAAAACATTTCCCTTGAAATGATTTTTTTTTCTCTCTTGAGATAGTTTCCCTCGAAACAGAAA
1 TTGAAAACATTTCCCTTGAAATGA---TTTTTTCTCTCTTGAGATAGTTTCCCTCGAAACAGAAA
740276 ATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
63 ATTTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
* * *
740317 TTGAAAACATTTCCCTTGAAATGAATTTTATCTCGCTTGAGATAGTTTCCCTTGAAAC-G--AAT
1 TTGAAAACATTTCCCTTGAAATG-ATTTTTTCTCTCTTGAGATAGTTTCCCTCGAAACAGAAAAT
* ** *
740379 TTTGTCTCTCTTGAGACAGTTTCTCTCCAAACATAAACT
65 TTTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
740418 TTGAAAACA
1 TTGAAAACA
740427 ATTTAACGAA
Statistics
Matches: 202, Mismatches: 8, Indels: 12
0.91 0.04 0.05
Matches are distributed among these distances:
101 68 0.34
103 2 0.01
104 30 0.15
106 101 0.50
107 1 0.00
ACGTcount: A:0.30, C:0.21, G:0.12, T:0.37
Consensus pattern (103 bp):
TTGAAAACATTTCCCTTGAAATGATTTTTTCTCTCTTGAGATAGTTTCCCTCGAAACAGAAAATT
TTGTCTCCCTTGAGACAGTTTCTCTTGAAACATAAACA
Found at i:740373 original size:36 final size:36
Alignment explanation
Indices: 740326--740401 Score: 116
Period size: 36 Copynumber: 2.1 Consensus size: 36
740316 ATTGAAAACA
* *
740326 TTTCCCTTGAAATGAATTTTATCTCGCTTGAGATAG
1 TTTCCCTTGAAACGAATTTTATCTCGCTTGAGACAG
* *
740362 TTTCCCTTGAAACGAATTTTGTCTCTCTTGAGACAG
1 TTTCCCTTGAAACGAATTTTATCTCGCTTGAGACAG
740398 TTTC
1 TTTC
740402 TCTCCAAACA
Statistics
Matches: 36, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
36 36 1.00
ACGTcount: A:0.22, C:0.20, G:0.16, T:0.42
Consensus pattern (36 bp):
TTTCCCTTGAAACGAATTTTATCTCGCTTGAGACAG
Found at i:740801 original size:105 final size:105
Alignment explanation
Indices: 740601--741231 Score: 923
Period size: 105 Copynumber: 6.0 Consensus size: 105
740591 ATATCGTGAC
* * * * * *
740601 ACTCGAGACAACACAAGTTCAACTTCACAATGAAGGGACGGCTGGTTGTCAACAAACAACTTCTC
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAAC-AACAACTTCTC
*
740666 AATTTCAGAGCCAATTTCAACTTCAAAACGAAGGATATTGG
65 AATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* *
740707 ACTCCAGACAACGCAAGTTCAACTTTACGACGAAGGGACCGCTGCTTGTCAACAACAACATCTCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCA
740772 ATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 ATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * * *
740812 ACTTCAGACAACGCAAGTTCAACTTCACGACGAAGGGAACGCTACTTGTCAACAACAACTTCCCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCA
* *
740877 ATCTCAGAGCCAATTTCAACTTCATAACGAAGGATATTGG
66 ATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
*
740917 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCCCA
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCA
*
740982 ATCTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
66 ATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
*
741022 ACTCCAGACAACGCAAGTTCAACTCCACGACGAAGGGACCGCTGCTTGTCAACAA-AA-TT-TC-
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCA
* *
741083 A-TTCAGAGTCAATTTCAACTTCACAGCGAAGGATATTGG
66 ATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
* * * * * *
741122 ACTCGAGACAACACAAGTTCAACTTCACAACGAAGGGACGGCTGGTTGTCAACAAACAATTTC-C
1 ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAAC-AACAACTTCTC
** * *
741186 CGTTTCCAGAGCCAATTTCAACTTCACGACGGAGGATATTGG
65 AATTT-CAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
741228 ACTC
1 ACTC
741232 GGAACAATGC
Statistics
Matches: 481, Mismatches: 37, Indels: 14
0.90 0.07 0.03
Matches are distributed among these distances:
100 82 0.17
101 3 0.01
102 3 0.01
103 5 0.01
104 2 0.00
105 304 0.63
106 82 0.17
ACGTcount: A:0.34, C:0.26, G:0.18, T:0.22
Consensus pattern (105 bp):
ACTCCAGACAACGCAAGTTCAACTTCACGACGAAGGGACCGCTGCTTGTCAACAACAACTTCTCA
ATTTCAGAGCCAATTTCAACTTCACAACGAAGGATATTGG
Found at i:741868 original size:37 final size:37
Alignment explanation
Indices: 741774--741875 Score: 132
Period size: 37 Copynumber: 2.8 Consensus size: 37
741764 CATTTTCGTC
741774 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
* * * *
741811 TTGCTAGGATTCAAACTCCTAAAAATAGGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
* * * *
741848 CTACTAAGATTTAAATTCCTAAAGATAG
1 CTACTAGGATTCAAACTCCTAAAAATAG
741876 AATCCACAAA
Statistics
Matches: 55, Mismatches: 10, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
37 55 1.00
ACGTcount: A:0.42, C:0.15, G:0.14, T:0.29
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAGGATAAAATT
Found at i:742261 original size:17 final size:18
Alignment explanation
Indices: 742235--742274 Score: 57
Period size: 18 Copynumber: 2.3 Consensus size: 18
742225 ATTATATGGA
742235 TATT-TTATTCAT-TTAT
1 TATTATTATTCATGTTAT
*
742251 TTTTATTATTCATGTTAT
1 TATTATTATTCATGTTAT
742269 TATTAT
1 TATTAT
742275 ATGTATATAT
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
16 3 0.15
17 8 0.40
18 9 0.45
ACGTcount: A:0.25, C:0.05, G:0.03, T:0.68
Consensus pattern (18 bp):
TATTATTATTCATGTTAT
Found at i:747514 original size:108 final size:107
Alignment explanation
Indices: 747402--747973 Score: 368
Period size: 108 Copynumber: 5.1 Consensus size: 107
747392 AAAATAGGTA
*
747402 AATTACTTAATTTGTCATGAGTATTATCAACATATTAGGTAACGCCTAAAATGTTACCAAAGTTT
1 AATTACTTAATTTATCAT-AGTATTATCAACATATTAGGTAACGCCTAAAATGTTACCAAAGTTT
**
747467 AAGCTGATGGAGCCTTAGAAATCTGATTATAACATAACCGGTT
65 AAGCTGATGGAGCCTTAGAAATCTGACGATAACATAACCGGTT
* * * * ** * * * **
747510 AATTACTGGAAACATTATCA-AGCATAAT-AACATATTAGGTAGTGCTTATGTAACGTAATATGT
1 AATTACT--TAA-TTTATCATAGTATTATCAACATATTAGGTAACGCCTA--AAATGT--TA-CC
** * * * ***
747573 AGTGTCTTTTTAAAGCTGATGG-GCCTTAAAAATCTCACGATAACAAAATATGTT
58 AAAG----TTT-AAGCTGATGGAGCCTTAGAAATCTGACGATAACATAACCGGTT
* * * *
747627 AATTACTTAATTTATTATCAATATTATCAACATATTAGGTAACACCTAAAACGTTACCAAAGTTT
1 AATTACTTAATTTATCAT-AGTATTATCAACATATTAGGTAACGCCTAAAATGTTACCAAAGTTT
* * *
747692 AAGCTGATAGAGCCTTAGAAATCCGATGATAACATAACCGGTT
65 AAGCTGATGGAGCCTTAGAAATCTGACGATAACATAACCGGTT
* * * * * *
747735 AATTA-TTGGAAACATTATCA-AGCATAAT-AACATATTAGGTAGCGCTTTTGTAACATAATAGG
1 AATTACTT---AA-TTTATCATAGTATTATCAACATATTAGGTAACGC----CT-A-A-AAT-GT
* * * * **
747797 TAGCGCATTA-TTAAAGCTGATGGGGCCTTAGAAATTCT-ACGATAACAAAATAGGTT
54 TA-C-CA-AAGTTTAAGCTGATGGAGCCTTAGAAA-TCTGACGATAACATAACCGGTT
* * *
747853 AATTACTTAATTTGTTATCAGTATTATCAACATATTAGGTAACACCTAAAATGTTACCAAAGTTT
1 AATTACTTAATTTATCAT-AGTATTATCAACATATTAGGTAACGCCTAAAATGTTACCAAAGTTT
* * *
747918 AAGCTGATTGAGCCTTAGAAATCCGACGATAACATAACCAGTT
65 AAGCTGATGGAGCCTTAGAAATCTGACGATAACATAACCGGTT
*
747961 AATTACTTGATTT
1 AATTACTTAATTT
747974 GTTATCAAGC
Statistics
Matches: 341, Mismatches: 84, Indels: 78
0.68 0.17 0.16
Matches are distributed among these distances:
107 14 0.04
108 120 0.35
109 12 0.04
110 11 0.03
111 13 0.04
112 6 0.02
113 6 0.02
114 7 0.02
115 13 0.04
116 10 0.03
117 57 0.17
118 67 0.20
119 5 0.01
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.33
Consensus pattern (107 bp):
AATTACTTAATTTATCATAGTATTATCAACATATTAGGTAACGCCTAAAATGTTACCAAAGTTTA
AGCTGATGGAGCCTTAGAAATCTGACGATAACATAACCGGTT
Found at i:747924 original size:226 final size:225
Alignment explanation
Indices: 747267--747967 Score: 1082
Period size: 225 Copynumber: 3.1 Consensus size: 225
747257 TAATATTGAC
* * *
747267 GATAACATAACCGGTTAATTACTAGAAACATTATCAAGCATAATAACATATTAGGTAACACTTAT
1 GATAACATAACCGGTTAATTACTGGAAACATTATCAAGCATAATAACATATTAGGTAGCGCTTAT
* * * *
747332 GTAACGTAATAGGTAGCGCTATTTTTAAAGTTGATAGGGCCTTTGAAATCCTAGGATAACAAAAT
66 GTAACGTAATAGGTAGCGC-ATTTTTAAAGCTGAT-GGGCCTTAGAAATTCTACGATAACAAAAT
* * * *
747397 AGGTAAATTACTTAATTTGTCATGAGTATTATCAACATATTAGGTAACGCCTAAAATGTTACCAA
129 AGGTTAATTACTTAATTTGTTATCAGTATTATCAACATATTAGGTAACACCTAAAATGTTACCAA
* *
747462 AGTTTAAGCTGATGGAGCCTTAGAAATCTGAT
194 AGTTTAAGCTGATAGAGCCTTAGAAATCCGAT
* *
747494 TATAACATAACCGGTTAATTACTGGAAACATTATCAAGCATAATAACATATTAGGTAGTGCTTAT
1 GATAACATAACCGGTTAATTACTGGAAACATTATCAAGCATAATAACATATTAGGTAGCGCTTAT
* * *
747559 GTAACGTAATATGTAGTGTC-TTTTTAAAGCTGATGGGCCTTA-AAAATCTCACGATAACAAAAT
66 GTAACGTAATAGGTAGCG-CATTTTTAAAGCTGATGGGCCTTAGAAATTCT-ACGATAACAAAAT
* * * *
747622 ATGTTAATTACTTAATTTATTATCAATATTATCAACATATTAGGTAACACCTAAAACGTTACCAA
129 AGGTTAATTACTTAATTTGTTATCAGTATTATCAACATATTAGGTAACACCTAAAATGTTACCAA
747687 AGTTTAAGCTGATAGAGCCTTAGAAATCCGAT
194 AGTTTAAGCTGATAGAGCCTTAGAAATCCGAT
* *
747719 GATAACATAACCGGTTAATTATTGGAAACATTATCAAGCATAATAACATATTAGGTAGCGCTTTT
1 GATAACATAACCGGTTAATTACTGGAAACATTATCAAGCATAATAACATATTAGGTAGCGCTTAT
* *
747784 GTAACATAATAGGTAGCGCATTATTAAAGCTGATGGGGCCTTAGAAATTCTACGATAACAAAATA
66 GTAACGTAATAGGTAGCGCATTTTTAAAGCTGAT-GGGCCTTAGAAATTCTACGATAACAAAATA
747849 GGTTAATTACTTAATTTGTTATCAGTATTATCAACATATTAGGTAACACCTAAAATGTTACCAAA
130 GGTTAATTACTTAATTTGTTATCAGTATTATCAACATATTAGGTAACACCTAAAATGTTACCAAA
* *
747914 GTTTAAGCTGATTGAGCCTTAGAAATCCGAC
195 GTTTAAGCTGATAGAGCCTTAGAAATCCGAT
*
747945 GATAACATAACCAGTTAATTACT
1 GATAACATAACCGGTTAATTACT
747968 TGATTTGTTA
Statistics
Matches: 430, Mismatches: 39, Indels: 11
0.90 0.08 0.02
Matches are distributed among these distances:
224 6 0.01
225 195 0.45
226 146 0.34
227 82 0.19
228 1 0.00
ACGTcount: A:0.38, C:0.14, G:0.15, T:0.32
Consensus pattern (225 bp):
GATAACATAACCGGTTAATTACTGGAAACATTATCAAGCATAATAACATATTAGGTAGCGCTTAT
GTAACGTAATAGGTAGCGCATTTTTAAAGCTGATGGGCCTTAGAAATTCTACGATAACAAAATAG
GTTAATTACTTAATTTGTTATCAGTATTATCAACATATTAGGTAACACCTAAAATGTTACCAAAG
TTTAAGCTGATAGAGCCTTAGAAATCCGAT
Found at i:748395 original size:2 final size:2
Alignment explanation
Indices: 748388--748413 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
748378 TAATTACAGA
748388 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
748414 GTGTGTGTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:750205 original size:289 final size:289
Alignment explanation
Indices: 749686--750266 Score: 1153
Period size: 289 Copynumber: 2.0 Consensus size: 289
749676 TTTCAACAAC
749686 AATTACATAAATACATTGATACTTACTAGAAATACATATATCCGCCCAGTGGTTATTTTCAATTT
1 AATTACATAAATACATTGATACTTACTAGAAATACATATATCCGCCCAGTGGTTATTTTCAATTT
749751 TCTTCAATGTTGATACTCTCGGGCTATATTTCAAGGTCATCATCTTCACGAACAAATATTGAACT
66 TCTTCAATGTTGATACTCTCGGGCTATATTTCAAGGTCATCATCTTCACGAACAAATATTGAACT
749816 TTCTACCTATAATAGGTCTGAAATGCTTCTTTAATTCAAAAACCCCAAACTCAAAAACCTAACCT
131 TTCTACCTATAATAGGTCTGAAATGCTTCTTTAATTCAAAAACCCCAAACTCAAAAACCTAACCT
*
749881 CTATTTTCGAATACTACAATACTAAAAAAGTAGGGTTTCAACAACATACCTTTTGATTCGATTGC
196 CTATTTCCGAATACTACAATACTAAAAAAGTAGGGTTTCAACAACATACCTTTTGATTCGATTGC
749946 ATCAACAAACAAATAACTACGCTTCCAAA
261 ATCAACAAACAAATAACTACGCTTCCAAA
749975 AATTACATAAATACATTGATACTTACTAGAAATACATATATCCGCCCAGTGGTTATTTTCAATTT
1 AATTACATAAATACATTGATACTTACTAGAAATACATATATCCGCCCAGTGGTTATTTTCAATTT
750040 TCTTCAATGTTGATACTCTCGGGCTATATTTCAAGGTCATCATCTTCACGAACAAATATTGAACT
66 TCTTCAATGTTGATACTCTCGGGCTATATTTCAAGGTCATCATCTTCACGAACAAATATTGAACT
750105 TTCTACCTATAATAGGTCTGAAATGCTTCTTTAATTCAAAAACCCCAAACTCAAAAACCTAACCT
131 TTCTACCTATAATAGGTCTGAAATGCTTCTTTAATTCAAAAACCCCAAACTCAAAAACCTAACCT
750170 CTATTTCCGAATACTACAATACTAAAAAAGTAGGGTTTCAACAACATACCTTTTGATTCGATTGC
196 CTATTTCCGAATACTACAATACTAAAAAAGTAGGGTTTCAACAACATACCTTTTGATTCGATTGC
750235 ATCAACAAACAAATAACTACGCTTCCAAA
261 ATCAACAAACAAATAACTACGCTTCCAAA
750264 AAT
1 AAT
750267 GCGCTACTAC
Statistics
Matches: 291, Mismatches: 1, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
289 291 1.00
ACGTcount: A:0.37, C:0.22, G:0.10, T:0.32
Consensus pattern (289 bp):
AATTACATAAATACATTGATACTTACTAGAAATACATATATCCGCCCAGTGGTTATTTTCAATTT
TCTTCAATGTTGATACTCTCGGGCTATATTTCAAGGTCATCATCTTCACGAACAAATATTGAACT
TTCTACCTATAATAGGTCTGAAATGCTTCTTTAATTCAAAAACCCCAAACTCAAAAACCTAACCT
CTATTTCCGAATACTACAATACTAAAAAAGTAGGGTTTCAACAACATACCTTTTGATTCGATTGC
ATCAACAAACAAATAACTACGCTTCCAAA
Found at i:750748 original size:21 final size:21
Alignment explanation
Indices: 750724--750778 Score: 92
Period size: 21 Copynumber: 2.6 Consensus size: 21
750714 GAAGTTTTAA
*
750724 GAATAGATACTTTTCATACTT
1 GAATCGATACTTTTCATACTT
750745 GAATCGATACTTTTCATACTT
1 GAATCGATACTTTTCATACTT
*
750766 GTATCGATACTTT
1 GAATCGATACTTT
750779 ATAGGTGAAA
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 32 1.00
ACGTcount: A:0.29, C:0.16, G:0.11, T:0.44
Consensus pattern (21 bp):
GAATCGATACTTTTCATACTT
Found at i:751342 original size:179 final size:180
Alignment explanation
Indices: 751057--751438 Score: 581
Period size: 179 Copynumber: 2.1 Consensus size: 180
751047 CGATACATAT
*
751057 ACAAAAAGTATCGATACTTTATGTTAACATCTTTTGTCATTAAACCAAATATATTTTTACAAGTA
1 ACAAAAAGTATCGATACTTTATGTTAACATATTTTGTCATTAAACCAAATATATTTTTACAAGTA
* * * *
751122 ACATTGTAAATTTACCTATTACTTTAAATTAATCGCTTTCGAAGTTTTAAGAATCAATACTTTTC
66 ACATTGTAAATTTACCAATTACTTTAAATTAACCACTTTCGAAGTTTTAAAAATCAATACTTTTC
* *
751187 ATACGTGTATCGATACTTTCTGTGTGCATTTTATTTGGGAAGCATACTGG
131 ATACGTGTATCGATACTTTCTGTGTGCATATCATTTGGGAAGCATACTGG
* * *** *
751237 ACAAAAAGTATCGATACTTTATGTTAACGTATTTTGTCATTACA-CTGGTA-ACTTTTTACATGT
1 ACAAAAAGTATCGATACTTTATGTTAACATATTTTGTCATTAAACCAAATATA-TTTTTACAAGT
*
751300 AACATTGTAAATTTACCAATTACTTTAAATTAACCACTTTCGAAGTTTTAAAAATCGATACTTTT
65 AACATTGTAAATTTACCAATTACTTTAAATTAACCACTTTCGAAGTTTTAAAAATCAATACTTTT
* *
751365 CATACGTGTATCGATACTTTTTGTGTGCATATCGTTTGGGAAGCATACTGG
130 CATACGTGTATCGATACTTTCTGTGTGCATATCATTTGGGAAGCATACTGG
*
751416 AAAAAAAGTATCGATAC-TTATGT
1 ACAAAAAGTATCGATACTTTATGT
751439 AAAAAGTATT
Statistics
Matches: 184, Mismatches: 17, Indels: 4
0.90 0.08 0.02
Matches are distributed among these distances:
178 7 0.04
179 136 0.74
180 41 0.22
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.40
Consensus pattern (180 bp):
ACAAAAAGTATCGATACTTTATGTTAACATATTTTGTCATTAAACCAAATATATTTTTACAAGTA
ACATTGTAAATTTACCAATTACTTTAAATTAACCACTTTCGAAGTTTTAAAAATCAATACTTTTC
ATACGTGTATCGATACTTTCTGTGTGCATATCATTTGGGAAGCATACTGG
Found at i:751444 original size:21 final size:22
Alignment explanation
Indices: 751418--751460 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
751408 CATACTGGAA
751418 AAAAAGTATCGATAC-TTATGT
1 AAAAAGTATCGATACTTTATGT
*
751439 AAAAAGTATTGATACTTTATGT
1 AAAAAGTATCGATACTTTATGT
751461 TAACATATTT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 14 0.70
22 6 0.30
ACGTcount: A:0.42, C:0.07, G:0.14, T:0.37
Consensus pattern (22 bp):
AAAAAGTATCGATACTTTATGT
Found at i:751524 original size:200 final size:199
Alignment explanation
Indices: 751239--752104 Score: 992
Period size: 198 Copynumber: 4.4 Consensus size: 199
751229 CATACTGGAC
* * *
751239 AAAAAGTATCGATACTTTATGTTAACGTATTTTGTCATTACACTGGTAACTTTTTACATGTAACA
1 AAAAAGTATCGATACTTTATGTTAACGTATTTTGTCATTACACTGGTATCTTTTTAC-GGTGACA
* *
751304 TTGTAAATTTACCAATTACTTTAAATTAACCACTTTCGAAGTTTTAAAAATCGATACTTTTCATA
65 TTGTAAATTTACCTATTACTTTAAATTAACCACTTTCGAAGTTTTAAGAATCGATACTTTTCATA
*
751369 CGTGTATCGATACTTTTTGTGTGCATATCGTTTGGGAAGCATACTGGAAAAAAAGTATCGATACT
130 CGTATATCGATACTTTTTGTGTGCATATCGTTTGGGAAGCATACTGGAAAAAAAGTATCGATACT
*
751434 TATGT
195 TATAT
* *
751439 AAAAAGTATTGATACTTTATGTTAACATATTTTGTCATTACACTGGTATCTTTTTATCGGTGACA
1 AAAAAGTATCGATACTTTATGTTAACGTATTTTGTCATTACACTGGTATCTTTTTA-CGGTGACA
*
751504 TTGTAAATTTACCTATTACTTTAAATTAACCATTTTCGAAGTTTTAAGAATCGATAC-TTTC-T-
65 TTGTAAATTTACCTATTACTTTAAATTAACCACTTTCGAAGTTTTAAGAATCGATACTTTTCATA
* * * * * *
751566 -GTGT-GC-AT-CTCGTTTG-G-G-A-A--------GCA-TA--CTGGAAAAAAAGTATCGACAC
130 CGTATATCGATACT-TTTTGTGTGCATATCGTTTGGGAAGCATACTGGAAAAAAAGTATCGATAC
751612 TTATAT
194 TTATAT
* * *
751618 AAAAAGTATCGATACTTTATGTTAACATATTTTGTTATTACA-TGGTATATTTTTACCGGTGACA
1 AAAAAGTATCGATACTTTATGTTAACGTATTTTGTCATTACACTGGTATCTTTTTA-CGGTGACA
* * * *
751682 TTGTAAATTTACCTATTACTTTAAATTAATCAATTTCCAAGTTTTAAGAATTGATACTTTTCATA
65 TTGTAAATTTACCTATTACTTTAAATTAACCACTTTCGAAGTTTTAAGAATCGATACTTTTCATA
* * * * * * * *
751747 TGTATATCGATACTTTCTGCGTACATCTCGTTTGGGAAGCATACTGGACAAAAATTATCAATACT
130 CGTATATCGATACTTTTTGTGTGCATATCGTTTGGGAAGCATACTGGAAAAAAAGTATCGATACT
751812 TATAT
195 TATAT
* * *
751817 -AAAAGTATCGATACTTTATGCTAACGTATTTT-TCATTACA-TCGATATCTTTTTACCGATGAC
1 AAAAAGTATCGATACTTTATGTTAACGTATTTTGTCATTACACT-GGTATCTTTTTA-CGGTGAC
* * * *
751879 ATTGTAAATTTACCTATTACTTTAAATTAATCGCTTTCGAAGTTTTAAGAATTGATACTTTTCGT
64 ATTGTAAATTTACCTATTACTTTAAATTAACCACTTTCGAAGTTTTAAGAATCGATACTTTTCAT
* * * * * *
751944 ACGTATATCAATACTTTATGTGTGCATCTCGTTTGGGAAGCATACTTGACAAAAAGTAGCGATAC
129 ACGTATATCGATACTTTTTGTGTGCATATCGTTTGGGAAGCATACTGGAAAAAAAGTATCGATAC
* *
752009 ATATAC
194 TTATAT
* * * * * * *
752015 AAGAAGGATTGAAACTTTATGTAAATGTATTTTGTCATTACACTGGTATCTTTTTACTGGTAACA
1 AAAAAGTATCGATACTTTATGTTAACGTATTTTGTCATTACACTGGTATCTTTTTAC-GGTGACA
* *
752080 TTATAAATTTATCTATTACTTTAAA
65 TTGTAAATTTACCTATTACTTTAAA
752105 CTTATAAATG
Statistics
Matches: 570, Mismatches: 67, Indels: 58
0.82 0.10 0.08
Matches are distributed among these distances:
178 73 0.13
179 69 0.12
180 1 0.00
181 1 0.00
182 5 0.01
183 1 0.00
184 5 0.01
185 3 0.01
187 1 0.00
190 1 0.00
191 1 0.00
192 1 0.00
193 3 0.01
194 6 0.01
195 1 0.00
196 6 0.01
197 9 0.02
198 169 0.30
199 53 0.09
200 159 0.28
201 2 0.00
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.40
Consensus pattern (199 bp):
AAAAAGTATCGATACTTTATGTTAACGTATTTTGTCATTACACTGGTATCTTTTTACGGTGACAT
TGTAAATTTACCTATTACTTTAAATTAACCACTTTCGAAGTTTTAAGAATCGATACTTTTCATAC
GTATATCGATACTTTTTGTGTGCATATCGTTTGGGAAGCATACTGGAAAAAAAGTATCGATACTT
ATAT
Found at i:751559 original size:179 final size:178
Alignment explanation
Indices: 751374--751742 Score: 621
Period size: 179 Copynumber: 2.1 Consensus size: 178
751364 TCATACGTGT
* *
751374 ATCGATACTTTTTGTGTGCATATCGTTTGGGAAGCATACTGGAAAAAAAGTATCGATACTTATGT
1 ATCGATACTTTTTGTGTGCATATCGTTTGGGAAGCATACTGGAAAAAAAGTATCGACACTTATAT
* * *
751439 AAAAAGTATTGATACTTTATGTTAACATATTTTGTCATTACACTGGTATCTTTTTATCGGTGACA
66 AAAAAGTATCGATACTTTATGTTAACATATTTTGTCATTACA-TGGTATATTTTTACCGGTGACA
* *
751504 TTGTAAATTTACCTATTACTTTAAATTAACCATTTTCGAAGTTTTAAGA
130 TTGTAAATTTACCTATTACTTTAAATTAACCAATTTCCAAGTTTTAAGA
* *
751553 ATCGATACTTTCTGTGTGCATCTCGTTTGGGAAGCATACTGGAAAAAAAGTATCGACACTTATAT
1 ATCGATACTTTTTGTGTGCATATCGTTTGGGAAGCATACTGGAAAAAAAGTATCGACACTTATAT
*
751618 AAAAAGTATCGATACTTTATGTTAACATATTTTGTTATTACATGGTATATTTTTACCGGTGACAT
66 AAAAAGTATCGATACTTTATGTTAACATATTTTGTCATTACATGGTATATTTTTACCGGTGACAT
*
751683 TGTAAATTTACCTATTACTTTAAATTAATCAATTTCCAAGTTTTAAGA
131 TGTAAATTTACCTATTACTTTAAATTAACCAATTTCCAAGTTTTAAGA
*
751731 ATTGATACTTTT
1 ATCGATACTTTT
751743 CATATGTATA
Statistics
Matches: 177, Mismatches: 13, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
178 76 0.43
179 101 0.57
ACGTcount: A:0.32, C:0.13, G:0.14, T:0.41
Consensus pattern (178 bp):
ATCGATACTTTTTGTGTGCATATCGTTTGGGAAGCATACTGGAAAAAAAGTATCGACACTTATAT
AAAAAGTATCGATACTTTATGTTAACATATTTTGTCATTACATGGTATATTTTTACCGGTGACAT
TGTAAATTTACCTATTACTTTAAATTAACCAATTTCCAAGTTTTAAGA
Found at i:751793 original size:378 final size:375
Alignment explanation
Indices: 750994--751939 Score: 1127
Period size: 378 Copynumber: 2.5 Consensus size: 375
750984 TATCTTAGGA
* * * * *
750994 ATCGATACTTTCTGCGTGCATCTAGTTTGGGAAACATATTGGACAAAAAATATCGATACATATAC
1 ATCGATACTTTCTGCGTGCATCTCGTTTGGGAAGCATACTGGA-AAAAAATATCGATACTTATAT
* * ** * * *
751059 AAAAAGTATCGATACTTTATGTTAACATCTTTTGTCATTAAACCAAATATATTTTTACAAGTAAC
65 AAAAAGTATCGATACTTTATGTTAACATATTTTGTCATTACA-CTGATATCTTTTTAC-GGTGAC
*
751124 ATTGTAAATTTACCTATTACTTTAAATTAATCGCTTTCGAAGTTTTAAGAATCAATACTTTTCAT
128 ATTGTAAATTTACCTATTACTTTAAATTAATCGCTTTCGAAGTTTTAAGAATCGATAC-TTTCAT
* * * * ** ***** * *
751189 ACGTGTATCGATACTTTCTGTGTGCATTTTATTTGGGAAGCATACTGGACAAAAAGTATCGATAC
192 ACGTGCATC-ATACGTTCTGGGAGCATTGAAAAAAAGAAGCACACTAGACAAAAAGTATCGATAC
* *
751254 TTTATGTTAACGTATTTTGTCATTACACTGGTAACTTTTTACATGTAACATTGTAAATTTACCAA
256 TTTATGTTAACATATTTTGTCATTACACTGGTAACTTTTTACAGGTAACATTGTAAATTTACCAA
* * *
751319 TTACTTTAAATTAACCACTTTCGAAGTTTTAAAAATCGATACTTTTCATACGTGT
321 TTACTTTAAATTAACCAATTTCCAAGTTTTAAAAATCGATACTTTTCATACGTAT
* * * *
751374 ATCGATACTTTTTGTGTGCATATCGTTTGGGAAGCATACTGGAAAAAAAGTATCGATACTTATGT
1 ATCGATACTTTCTGCGTGCATCTCGTTTGGGAAGCATACTGGAAAAAAA-TATCGATACTTATAT
* *
751439 AAAAAGTATTGATACTTTATGTTAACATATTTTGTCATTACACTGGTATCTTTTTATCGGTGACA
65 AAAAAGTATCGATACTTTATGTTAACATATTTTGTCATTACACTGATATCTTTTTA-CGGTGACA
* ** **
751504 TTGTAAATTTACCTATTACTTTAAATTAACCATTTTCGAAGTTTTAAGAATCGATACTTTC-TGT
129 TTGTAAATTTACCTATTACTTTAAATTAATCGCTTTCGAAGTTTTAAGAATCGATACTTTCATAC
* * * *
751568 GTGCATC-T-CGTT-TGGGAAGCATACTGGAAAAAAAGTATCGACACTTATATAAAAAGTATCGA
194 GTGCATCATACGTTCTGGG-AGCAT--T-GAAAAAAAGAAGC-ACAC-TAGACAAAAAGTATCGA
* * *
751630 TACTTTATGTTAACATATTTTGTTATTACA-TGGTATA-TTTTTACCGGTGACATTGTAAATTTA
253 TACTTTATGTTAACATATTTTGTCATTACACTGGTA-ACTTTTTACAGGTAACATTGTAAATTTA
* * * * *
751693 CCTATTACTTTAAATTAATCAATTTCCAAGTTTTAAGAATTGATACTTTTCATATGTAT
317 CCAATTACTTTAAATTAACCAATTTCCAAGTTTTAAAAATCGATACTTTTCATACGTAT
* * *
751752 ATCGATACTTTCTGCGTACATCTCGTTTGGGAAGCATACTGGACAAAAATTATCAATACTTATAT
1 ATCGATACTTTCTGCGTGCATCTCGTTTGGGAAGCATACTGGA-AAAAAATATCGATACTTATAT
* * *
751817 -AAAAGTATCGATACTTTATGCTAACGTATTTT-TCATTACA-TCGATATCTTTTTACCGATGAC
65 AAAAAGTATCGATACTTTATGTTAACATATTTTGTCATTACACT-GATATCTTTTTA-CGGTGAC
*
751879 ATTGTAAATTTACCTATTACTTTAAATTAATCGCTTTCGAAGTTTTAAGAATTGATACTTT
128 ATTGTAAATTTACCTATTACTTTAAATTAATCGCTTTCGAAGTTTTAAGAATCGATACTTT
751940 TCGTACGTAT
Statistics
Matches: 484, Mismatches: 71, Indels: 26
0.83 0.12 0.04
Matches are distributed among these distances:
373 3 0.01
374 7 0.01
375 2 0.00
376 83 0.17
377 40 0.08
378 138 0.29
379 122 0.25
380 89 0.18
ACGTcount: A:0.33, C:0.14, G:0.13, T:0.40
Consensus pattern (375 bp):
ATCGATACTTTCTGCGTGCATCTCGTTTGGGAAGCATACTGGAAAAAAATATCGATACTTATATA
AAAAGTATCGATACTTTATGTTAACATATTTTGTCATTACACTGATATCTTTTTACGGTGACATT
GTAAATTTACCTATTACTTTAAATTAATCGCTTTCGAAGTTTTAAGAATCGATACTTTCATACGT
GCATCATACGTTCTGGGAGCATTGAAAAAAAGAAGCACACTAGACAAAAAGTATCGATACTTTAT
GTTAACATATTTTGTCATTACACTGGTAACTTTTTACAGGTAACATTGTAAATTTACCAATTACT
TTAAATTAACCAATTTCCAAGTTTTAAAAATCGATACTTTTCATACGTAT
Found at i:753270 original size:17 final size:17
Alignment explanation
Indices: 753248--753307 Score: 75
Period size: 17 Copynumber: 3.4 Consensus size: 17
753238 CACATCTGTG
753248 TCCCGAAAGACCTATCA
1 TCCCGAAAGACCTATCA
** *
753265 TCCCGAAAGATGTGATCTG
1 TCCCGAAAGACCT-ATC-A
753284 TCCCGAAAGACCTATCA
1 TCCCGAAAGACCTATCA
753301 TCCCGAA
1 TCCCGAA
753308 GGATGTCATC
Statistics
Matches: 35, Mismatches: 6, Indels: 4
0.78 0.13 0.09
Matches are distributed among these distances:
17 18 0.51
18 6 0.17
19 11 0.31
ACGTcount: A:0.32, C:0.32, G:0.17, T:0.20
Consensus pattern (17 bp):
TCCCGAAAGACCTATCA
Found at i:753289 original size:19 final size:18
Alignment explanation
Indices: 753246--753326 Score: 67
Period size: 17 Copynumber: 4.5 Consensus size: 18
753236 ACCACATCTG
**
753246 TGTCCCGAAAGACCTATC
1 TGTCCCGAAAGATGTATC
*
753264 -ATCCCGAAAGATGTGATC
1 TGTCCCGAAAGATGT-ATC
**
753282 TGTCCCGAAAGACCTATC
1 TGTCCCGAAAGATGTATC
* *
753300 -ATCCCGAAGGATGTCATC
1 TGTCCCGAAAGATGT-ATC
753318 TGTCCCGAA
1 TGTCCCGAA
753327 TGATCACTTT
Statistics
Matches: 48, Mismatches: 11, Indels: 7
0.73 0.17 0.11
Matches are distributed among these distances:
17 21 0.44
18 9 0.19
19 18 0.38
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (18 bp):
TGTCCCGAAAGATGTATC
Found at i:753293 original size:36 final size:36
Alignment explanation
Indices: 753246--753326 Score: 144
Period size: 36 Copynumber: 2.2 Consensus size: 36
753236 ACCACATCTG
*
753246 TGTCCCGAAAGACCTATCATCCCGAAAGATGTGATC
1 TGTCCCGAAAGACCTATCATCCCGAAAGATGTCATC
*
753282 TGTCCCGAAAGACCTATCATCCCGAAGGATGTCATC
1 TGTCCCGAAAGACCTATCATCCCGAAAGATGTCATC
753318 TGTCCCGAA
1 TGTCCCGAA
753327 TGATCACTTT
Statistics
Matches: 43, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
36 43 1.00
ACGTcount: A:0.28, C:0.30, G:0.20, T:0.22
Consensus pattern (36 bp):
TGTCCCGAAAGACCTATCATCCCGAAAGATGTCATC
Found at i:754749 original size:30 final size:31
Alignment explanation
Indices: 754693--754751 Score: 77
Period size: 30 Copynumber: 1.9 Consensus size: 31
754683 AACCATTCAT
* *
754693 AACTTTTCTAAAATTATCGAATTGGTCCCCC
1 AACTTTTCTAAAATTATCAAAATGGTCCCCC
754724 AACTTTTC-AAAATTA-CAAAAATGGTCCC
1 AACTTTTCTAAAATTATC-AAAATGGTCCC
754752 AAATTTTTAC
Statistics
Matches: 25, Mismatches: 2, Indels: 3
0.83 0.07 0.10
Matches are distributed among these distances:
29 1 0.04
30 16 0.64
31 8 0.32
ACGTcount: A:0.36, C:0.24, G:0.08, T:0.32
Consensus pattern (31 bp):
AACTTTTCTAAAATTATCAAAATGGTCCCCC
Found at i:755761 original size:30 final size:29
Alignment explanation
Indices: 755695--755761 Score: 71
Period size: 30 Copynumber: 2.2 Consensus size: 29
755685 ATTTTGGTCC
* * * *
755695 CTAAACTTTTCAAAGTTTATACTTTGGTTA
1 CTAAAC-TTTCAAAATTTATAATTTGATCA
*
755725 CCAAACTTTCAAAATCTTATAATTTGATCA
1 CTAAACTTTCAAAAT-TTATAATTTGATCA
755755 CTAAACT
1 CTAAACT
755762 AAATCCATTT
Statistics
Matches: 30, Mismatches: 6, Indels: 2
0.79 0.16 0.05
Matches are distributed among these distances:
29 8 0.27
30 22 0.73
ACGTcount: A:0.36, C:0.18, G:0.06, T:0.40
Consensus pattern (29 bp):
CTAAACTTTCAAAATTTATAATTTGATCA
Found at i:756718 original size:16 final size:15
Alignment explanation
Indices: 756701--756811 Score: 79
Period size: 16 Copynumber: 7.4 Consensus size: 15
756691 TTTAGGCGTC
756701 TCTTATTTTTTTATT
1 TCTTATTTTTTTATT
*
756716 CTCTTATTTTTTCATT
1 -TCTTATTTTTTTATT
*
756732 TCATT-TTATTTTA-T
1 TC-TTATTTTTTTATT
*
756746 T-TTATTTTTTTCTT
1 TCTTATTTTTTTATT
* *
756760 TCTTTTTTTATTTTTTAT
1 TC-TTATTT-TTTTAT-T
756778 TCTTA-TTTTTTA-T
1 TCTTATTTTTTTATT
* *
756791 TCTTCTTTTTTTAGT
1 TCTTATTTTTTTATT
756806 TCTTAT
1 TCTTAT
756812 GCCTTTTGCA
Statistics
Matches: 75, Mismatches: 11, Indels: 19
0.71 0.10 0.18
Matches are distributed among these distances:
12 2 0.03
13 11 0.15
14 11 0.15
15 18 0.24
16 23 0.31
17 7 0.09
18 3 0.04
ACGTcount: A:0.13, C:0.10, G:0.01, T:0.77
Consensus pattern (15 bp):
TCTTATTTTTTTATT
Found at i:756756 original size:13 final size:13
Alignment explanation
Indices: 756735--756803 Score: 56
Period size: 13 Copynumber: 5.4 Consensus size: 13
756725 TTTCATTTCA
756735 TTTTATTTTATTT
1 TTTTATTTTATTT
*
756748 TATTT-TTTTCTTT
1 T-TTTATTTTATTT
*
756761 CTTT-TTTTA-TT
1 TTTTATTTTATTT
756772 TTTTATTCTTA-TT
1 TTTTATT-TTATTT
*
756785 TTTTATTCTTCTTT
1 TTTTATT-TTATTT
756799 TTTTA
1 TTTTA
756804 GTTCTTATGC
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
11 5 0.11
12 9 0.19
13 23 0.49
14 10 0.21
ACGTcount: A:0.12, C:0.07, G:0.00, T:0.81
Consensus pattern (13 bp):
TTTTATTTTATTT
Found at i:756756 original size:18 final size:19
Alignment explanation
Indices: 756735--756791 Score: 55
Period size: 18 Copynumber: 3.0 Consensus size: 19
756725 TTTCATTTCA
756735 TTTTATTTTATTTTAT-TT
1 TTTTATTTTATTTTATATT
* *
756753 TTTTCTTTCT-TTTTTTATT
1 TTTTATTT-TATTTTATATT
*
756772 TTTTATTCTTATTTTTTATT
1 TTTTATT-TTATTTTATATT
756792 CTTCTTTTTT
Statistics
Matches: 32, Mismatches: 3, Indels: 6
0.78 0.07 0.15
Matches are distributed among these distances:
18 12 0.38
19 10 0.31
20 10 0.31
ACGTcount: A:0.12, C:0.05, G:0.00, T:0.82
Consensus pattern (19 bp):
TTTTATTTTATTTTATATT
Found at i:756797 original size:34 final size:32
Alignment explanation
Indices: 756740--756803 Score: 94
Period size: 34 Copynumber: 1.9 Consensus size: 32
756730 TTTCATTTTA
756740 TTTTATTTTATTTTTTTCTTTCTTTTTTTATT
1 TTTTATTTTATTTTTTTCTTTCTTTTTTTATT
756772 TTTTATTCTTATTTTTTAT-TCTTCTTTTTTTA
1 TTTTATT-TTATTTTTT-TCT-TTCTTTTTTTA
756804 GTTCTTATGC
Statistics
Matches: 29, Mismatches: 0, Indels: 4
0.88 0.00 0.12
Matches are distributed among these distances:
32 7 0.24
33 10 0.34
34 12 0.41
ACGTcount: A:0.11, C:0.08, G:0.00, T:0.81
Consensus pattern (32 bp):
TTTTATTTTATTTTTTTCTTTCTTTTTTTATT
Found at i:762897 original size:2 final size:2
Alignment explanation
Indices: 762890--762918 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
762880 TCAATCTACA
762890 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
762919 ATTTACGACA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:763099 original size:13 final size:13
Alignment explanation
Indices: 763083--763126 Score: 70
Period size: 13 Copynumber: 3.4 Consensus size: 13
763073 GCAATGAGCA
763083 TCATAAATGCGCG
1 TCATAAATGCGCG
* *
763096 TCATAAATGTGTG
1 TCATAAATGCGCG
763109 TCATAAATGCGCG
1 TCATAAATGCGCG
763122 TCATA
1 TCATA
763127 GATTTATGAC
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
13 27 1.00
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30
Consensus pattern (13 bp):
TCATAAATGCGCG
Found at i:763104 original size:26 final size:26
Alignment explanation
Indices: 763075--763126 Score: 77
Period size: 26 Copynumber: 2.0 Consensus size: 26
763065 AATGAAGCGC
763075 AATGAGCATCATAAATGCGCGTCATA
1 AATGAGCATCATAAATGCGCGTCATA
* **
763101 AATGTGTGTCATAAATGCGCGTCATA
1 AATGAGCATCATAAATGCGCGTCATA
763127 GATTTATGAC
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
26 23 1.00
ACGTcount: A:0.35, C:0.17, G:0.21, T:0.27
Consensus pattern (26 bp):
AATGAGCATCATAAATGCGCGTCATA
Found at i:764027 original size:30 final size:30
Alignment explanation
Indices: 763966--764028 Score: 81
Period size: 30 Copynumber: 2.1 Consensus size: 30
763956 CAAACACTTT
* * * *
763966 TGATATCTTTTATAATCTCGTGTACAATAC
1 TGATATCTTTTATAAACCCATGAACAATAC
*
763996 TGATATCTTTTATAAACCCATGAACATTAC
1 TGATATCTTTTATAAACCCATGAACAATAC
764026 TGA
1 TGA
764029 GAACTCAAGG
Statistics
Matches: 28, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
30 28 1.00
ACGTcount: A:0.33, C:0.17, G:0.10, T:0.40
Consensus pattern (30 bp):
TGATATCTTTTATAAACCCATGAACAATAC
Found at i:764251 original size:21 final size:21
Alignment explanation
Indices: 764168--764251 Score: 55
Period size: 21 Copynumber: 4.1 Consensus size: 21
764158 TTAGAATCAA
* *
764168 ATATATATCCC-AATGACCAA
1 ATATATATCCCAAAGGACCAC
* * * * *
764188 ATATGT-TCCCTAAGAAACGC
1 ATATATATCCCAAAGGACCAC
* * **
764208 ATATATGTTCCAAAGGATTAC
1 ATATATATCCCAAAGGACCAC
764229 ATATATATCCCAAAGGACCAC
1 ATATATATCCCAAAGGACCAC
764250 AT
1 AT
764252 CTGTGTCCCG
Statistics
Matches: 45, Mismatches: 17, Indels: 3
0.69 0.26 0.05
Matches are distributed among these distances:
19 4 0.09
20 14 0.31
21 27 0.60
ACGTcount: A:0.40, C:0.23, G:0.11, T:0.26
Consensus pattern (21 bp):
ATATATATCCCAAAGGACCAC
Found at i:764634 original size:18 final size:18
Alignment explanation
Indices: 764584--764643 Score: 65
Period size: 18 Copynumber: 3.5 Consensus size: 18
764574 CACATAGGTT
*
764584 ATATCATATCA-TATATC
1 ATATCATATAATTATATC
*
764601 ACAT-AT-TAATGT-TATC
1 ATATCATATAAT-TATATC
764617 ATATCATATAATTATATC
1 ATATCATATAATTATATC
764635 ATATCATAT
1 ATATCATAT
764644 CTTATATATT
Statistics
Matches: 35, Mismatches: 3, Indels: 9
0.74 0.06 0.19
Matches are distributed among these distances:
15 2 0.06
16 9 0.26
17 7 0.20
18 17 0.49
ACGTcount: A:0.42, C:0.13, G:0.02, T:0.43
Consensus pattern (18 bp):
ATATCATATAATTATATC
Found at i:766952 original size:42 final size:42
Alignment explanation
Indices: 766893--767004 Score: 188
Period size: 42 Copynumber: 2.7 Consensus size: 42
766883 CCCGAATTCT
*
766893 CGTGTTTGTTTCACGTAATTAGTTTTCCGGAAAATGTTTTCC
1 CGTGTTTGTTTCACGTAATTAGTTTTCCGGAAAATATTTTCC
*
766935 CGTGTTTGTTTCACGTAATTTGTTTTCCGGAAAATATTTTCC
1 CGTGTTTGTTTCACGTAATTAGTTTTCCGGAAAATATTTTCC
* *
766977 AGTGTTTGTTTCACGTAATTGGTTTTCC
1 CGTGTTTGTTTCACGTAATTAGTTTTCC
767005 TGAACGTAAT
Statistics
Matches: 66, Mismatches: 4, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
42 66 1.00
ACGTcount: A:0.18, C:0.16, G:0.19, T:0.47
Consensus pattern (42 bp):
CGTGTTTGTTTCACGTAATTAGTTTTCCGGAAAATATTTTCC
Found at i:767213 original size:14 final size:14
Alignment explanation
Indices: 767191--767227 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
767181 AAATATTATT
767191 TATTAATATTTATAA
1 TATT-ATATTTATAA
767206 TATTATATTTATAA
1 TATTATATTTATAA
767220 TATTATAT
1 TATTATAT
767228 AAAATAATCA
Statistics
Matches: 22, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
14 18 0.82
15 4 0.18
ACGTcount: A:0.43, C:0.00, G:0.00, T:0.57
Consensus pattern (14 bp):
TATTATATTTATAA
Found at i:767250 original size:30 final size:28
Alignment explanation
Indices: 767202--767289 Score: 90
Period size: 28 Copynumber: 3.1 Consensus size: 28
767192 ATTAATATTT
767202 ATAAT-ATTATATTTATAATATTATATAAA
1 ATAATAATTATA-TTATAATA-TATATAAA
767231 ATAATCAATTATATTATAATA-ATATAAA
1 ATAAT-AATTATATTATAATATATATAAA
* * * *
767259 TATTATATTTTTATTTTAATATATATAAA
1 -ATAATAATTATATTATAATATATATAAA
767288 AT
1 AT
767290 TTTTATATTT
Statistics
Matches: 51, Mismatches: 4, Indels: 9
0.80 0.06 0.14
Matches are distributed among these distances:
28 21 0.41
29 16 0.31
30 8 0.16
31 6 0.12
ACGTcount: A:0.50, C:0.01, G:0.00, T:0.49
Consensus pattern (28 bp):
ATAATAATTATATTATAATATATATAAA
Found at i:767278 original size:25 final size:25
Alignment explanation
Indices: 767250--767337 Score: 83
Period size: 23 Copynumber: 3.5 Consensus size: 25
767240 TATATTATAA
767250 TAATATAAATATTATATTTTTAT-TT
1 TAATAT-AATATTATATTTTTATATT
* *
767275 TAATAT-ATATAAAATTTTTATATT
1 TAATATAATATTATATTTTTATATT
* *
767299 TAATAATGAATAATATTATTTATATATT
1 TAAT-AT-AATATTA-TATTTTTATATT
767327 TAA-ATAATATT
1 TAATATAATATT
767338 TTAATAAAGA
Statistics
Matches: 51, Mismatches: 7, Indels: 10
0.75 0.10 0.15
Matches are distributed among these distances:
23 13 0.25
24 6 0.12
25 13 0.25
26 2 0.04
27 4 0.08
28 13 0.25
ACGTcount: A:0.45, C:0.00, G:0.01, T:0.53
Consensus pattern (25 bp):
TAATATAATATTATATTTTTATATT
Found at i:767363 original size:21 final size:20
Alignment explanation
Indices: 767339--767385 Score: 58
Period size: 21 Copynumber: 2.3 Consensus size: 20
767329 AATAATATTT
767339 TAATAAAGATATTTAAAATA
1 TAATAAAGATATTTAAAATA
* * *
767359 CTAATTAATATTTTTAAAATA
1 -TAATAAAGATATTTAAAATA
767380 TAATAA
1 TAATAA
767386 CACTATTACT
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
20 5 0.23
21 17 0.77
ACGTcount: A:0.55, C:0.02, G:0.02, T:0.40
Consensus pattern (20 bp):
TAATAAAGATATTTAAAATA
Found at i:767525 original size:17 final size:19
Alignment explanation
Indices: 767486--767538 Score: 58
Period size: 20 Copynumber: 2.9 Consensus size: 19
767476 AAAAATACTA
*
767486 TTTAATAATAAATAATTATT
1 TTTAATAATAAATAA-TAGT
767506 TTTAATAATAAA-AA-AGT
1 TTTAATAATAAATAATAGT
*
767523 TTT-ATGATAAATAATA
1 TTTAATAATAAATAATA
767539 TTATTTATTG
Statistics
Matches: 29, Mismatches: 2, Indels: 6
0.78 0.05 0.16
Matches are distributed among these distances:
16 7 0.24
17 7 0.24
18 1 0.03
19 2 0.07
20 12 0.41
ACGTcount: A:0.53, C:0.00, G:0.04, T:0.43
Consensus pattern (19 bp):
TTTAATAATAAATAATAGT
Found at i:767694 original size:14 final size:14
Alignment explanation
Indices: 767671--767710 Score: 53
Period size: 14 Copynumber: 2.9 Consensus size: 14
767661 AATGTAATTT
*
767671 ATTTTACGGAAAAC
1 ATTTTCCGGAAAAC
767685 ATTTTCCGGAAAAC
1 ATTTTCCGGAAAAC
* *
767699 GTTTTCCAGAAA
1 ATTTTCCGGAAA
767711 TGTAATTCAT
Statistics
Matches: 23, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
14 23 1.00
ACGTcount: A:0.38, C:0.17, G:0.15, T:0.30
Consensus pattern (14 bp):
ATTTTCCGGAAAAC
Found at i:767737 original size:20 final size:20
Alignment explanation
Indices: 767700--767739 Score: 53
Period size: 20 Copynumber: 2.0 Consensus size: 20
767690 CCGGAAAACG
**
767700 TTTTCCAGAAATGTAATTCA
1 TTTTCCAGAAATCAAATTCA
*
767720 TTTTCCAGAATTCAAATTCA
1 TTTTCCAGAAATCAAATTCA
767740 AGTAATTCAT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.35, C:0.17, G:0.07, T:0.40
Consensus pattern (20 bp):
TTTTCCAGAAATCAAATTCA
Found at i:767754 original size:29 final size:30
Alignment explanation
Indices: 767712--767785 Score: 114
Period size: 31 Copynumber: 2.5 Consensus size: 30
767702 TTCCAGAAAT
767712 GTAATTCATTTTCCAG-AATTCAAATTCAA
1 GTAATTCATTTTCCAGTAATTCAAATTCAA
*
767741 GTAATTCATTTTCCAGTTAATTCAAATTCCA
1 GTAATTCATTTTCCAG-TAATTCAAATTCAA
*
767772 TTAATTCATTTTCC
1 GTAATTCATTTTCC
767786 GGAAAATCAA
Statistics
Matches: 41, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
29 16 0.39
31 25 0.61
ACGTcount: A:0.32, C:0.19, G:0.05, T:0.43
Consensus pattern (30 bp):
GTAATTCATTTTCCAGTAATTCAAATTCAA
Found at i:767785 original size:15 final size:15
Alignment explanation
Indices: 767713--767785 Score: 67
Period size: 15 Copynumber: 4.9 Consensus size: 15
767703 TCCAGAAATG
767713 TAATTCATTTTCCA-
1 TAATTCATTTTCCAT
* ** * *
767727 GAATTCAAATTCAAG
1 TAATTCATTTTCCAT
767742 TAATTCATTTTCCAGT
1 TAATTCATTTTCCA-T
**
767758 TAATTCAAATTCCAT
1 TAATTCATTTTCCAT
767773 TAATTCATTTTCC
1 TAATTCATTTTCC
767786 GGAAAATCAA
Statistics
Matches: 44, Mismatches: 13, Indels: 3
0.73 0.22 0.05
Matches are distributed among these distances:
14 10 0.23
15 22 0.50
16 12 0.27
ACGTcount: A:0.33, C:0.19, G:0.04, T:0.44
Consensus pattern (15 bp):
TAATTCATTTTCCAT
Found at i:774846 original size:194 final size:193
Alignment explanation
Indices: 774516--775042 Score: 673
Period size: 194 Copynumber: 2.7 Consensus size: 193
774506 TTTTCTTTTA
* * * * * * *
774516 AAAGTATCAATAATATGATACATATACTTTTAAAAGTATCAATACCTTCAATATATCCGCTAGCG
1 AAAGTATCGATAATATGATACATATACTTATAAAAGTATCGATACCTTCAACATATCAGGTAG-T
** * ** * *
774581 CTTTACTAGTTTTGTTATATTGAAACCAATTTTGTCATATTTTAACATGTTATATTGTCATGTAT
65 CTTTACCGGTTTTGTCATATTGAAACCGGTTTTGTCATAATTTAACCTGTTATATTGTCATGTAT
* *
774646 CGATACATATTTCTAAAGTATCGATACTTTATAGGCGCTATTATTGCAATTCTTTTAAATTCCT
130 CGATACATATTTCTAAACTATCGATACTTTATAGGCGCTATTACTGCAATTCTTTTAAATTCCT
* *
774710 TAAGTATCGATAATATGATACATATACTTATAAAAGTATCGATACCTTCAACATATCTGGTAGTT
1 AAAGTATCGATAATATGATACATATACTTATAAAAGTATCGATACCTTCAACATATCAGGTAG-T
* * *
774775 CTTTGCCGGTTTTGTCATATTGAAACTGGTTTTGTCATAATTTAACCTGTTATACTGTCATGTAT
65 CTTTACCGGTTTTGTCATATTGAAACCGGTTTTGTCATAATTTAACCTGTTATATTGTCATGTAT
*
774840 CGATACATATTTCTAAACTATCGATATTTTATAGGCGCTATTACTGCAATTCTTTTAAATTCCT
130 CGATACATATTTCTAAACTATCGATACTTTATAGGCGCTATTACTGCAATTCTTTTAAATTCCT
* * * * *
774904 AAAGTATCGATAATTTGGTGCATATTTACTTAGAAAAGTATCGATACAAATTTCAACA-ATTCAG
1 AAAGTATCGATAATATGATACATA--TACTTATAAAAGTATCGATAC---CTTCAACATA-TCAG
* * * *
774968 GTA-TCTCTACCGGTTTTGTCAAATTGAAACCGGTTTTGTCA-AACTTCAACCTGTTATATTGTT
60 GTAGTCTTTACCGGTTTTGTCATATTGAAACCGGTTTTGTCATAA-TTTAACCTGTTATATTGTC
775031 ATGTATCGATAC
124 ATGTATCGATAC
775043 TTCTTTGCAA
Statistics
Matches: 290, Mismatches: 36, Indels: 11
0.86 0.11 0.03
Matches are distributed among these distances:
194 192 0.66
196 22 0.08
197 62 0.21
198 1 0.00
199 13 0.04
ACGTcount: A:0.32, C:0.16, G:0.13, T:0.40
Consensus pattern (193 bp):
AAAGTATCGATAATATGATACATATACTTATAAAAGTATCGATACCTTCAACATATCAGGTAGTC
TTTACCGGTTTTGTCATATTGAAACCGGTTTTGTCATAATTTAACCTGTTATATTGTCATGTATC
GATACATATTTCTAAACTATCGATACTTTATAGGCGCTATTACTGCAATTCTTTTAAATTCCT
Found at i:795254 original size:45 final size:45
Alignment explanation
Indices: 795154--795304 Score: 198
Period size: 45 Copynumber: 3.3 Consensus size: 45
795144 TTCATTGAGA
* ** *
795154 GCATCCATTCATGCTTATAATACA-CCATTATGCATTTTCATTTATG
1 GCATCCTTTCATGCCGATAATGCACCCA-TATGCA-TTTCATTTATG
* *
795200 GCATTCTTTCATGCC-ACTAATGCACCCATATGCATTTCAATTATG
1 GCATCCTTTCATGCCGA-TAATGCACCCATATGCATTTCATTTATG
*
795245 GCATCCTTTCGTGCCGATAATGCACCCATATGCATTTCATTTATG
1 GCATCCTTTCATGCCGATAATGCACCCATATGCATTTCATTTATG
795290 GCATCCTTTCATGCC
1 GCATCCTTTCATGCC
795305 TTTTTATATA
Statistics
Matches: 93, Mismatches: 9, Indels: 7
0.85 0.08 0.06
Matches are distributed among these distances:
45 65 0.70
46 25 0.27
47 3 0.03
ACGTcount: A:0.25, C:0.26, G:0.12, T:0.37
Consensus pattern (45 bp):
GCATCCTTTCATGCCGATAATGCACCCATATGCATTTCATTTATG
Found at i:795329 original size:91 final size:90
Alignment explanation
Indices: 795154--795540 Score: 361
Period size: 90 Copynumber: 4.3 Consensus size: 90
795144 TTCATTGAGA
* * * * **
795154 GCATCCATTCATG-CTTATAATACACCATTATGCATTTTCATTTATGGCATTC-TTTCATGCCAC
1 GCATCCTTTCATGCCTT-TTATACACTATTATACA-TTTCATTTATGGCA-TCATTTCATGCCTT
* * * * * *
795217 TAATGCACCCA-TATGCATTTCAATTATG
63 TTATACA-CTATTATACGTTTCATTTATG
* ** * * * * *
795245 GCATCCTTTCGTGCCGATAATGCACCCA-TATGCATTTCATTTATGGCATCCTTTCATGCCTTTT
1 GCATCCTTTCATGCCTTTTATACA-CTATTATACATTTCATTTATGGCATCATTTCATGCC-TTT
* *
795309 TATATACTATTAAACGTTTCATTTATG
64 TATACACTATTATACGTTTCATTTATG
* * *
795336 GTATCTTTTCATGCCTTTTATACACTATTATACATTTCATTTATGGCATCATTGCATGCCTTTTA
1 GCATCCTTTCATGCCTTTTATACACTATTATACATTTCATTTATGGCATCATTTCATGCCTTTTA
* * * *
795401 TAGACTAATATATGTTTCTTTTATG
66 TACACTATTATACGTTTCATTTATG
* * *
795426 GCATCCTTTCATGCCTTTTTATACACTATTAAACGTTTCATTTATGGCAT-TTTTCATGCCTTTT
1 GCATCCTTTCATGCC-TTTTATACACTATTATACATTTCATTTATGGCATCATTTCATGCCTTTT
795490 ATACACTATTATACGTTTCATTTATG
65 ATACACTATTATACGTTTCATTTATG
* *
795516 ACATCCTTTCATGCATTTTTATACA
1 GCATCCTTTCATGC-CTTTTATACA
795541 ACATTATGCA
Statistics
Matches: 245, Mismatches: 43, Indels: 17
0.80 0.14 0.06
Matches are distributed among these distances:
89 2 0.01
90 121 0.49
91 118 0.48
92 4 0.02
ACGTcount: A:0.25, C:0.21, G:0.10, T:0.44
Consensus pattern (90 bp):
GCATCCTTTCATGCCTTTTATACACTATTATACATTTCATTTATGGCATCATTTCATGCCTTTTA
TACACTATTATACGTTTCATTTATG
Found at i:795346 original size:136 final size:135
Alignment explanation
Indices: 795189--795529 Score: 362
Period size: 136 Copynumber: 2.5 Consensus size: 135
795179 CATTATGCAT
* * *
795189 TTTCATTTATGGCATTCTTTCATGCCACTAATGCACCCA-TATGCATTTCAATTATGGCATCCTT
1 TTTCATTTATGGCATT-TTTCATGCCACTAATACA-CCATTATACATTTCAATTATGGCATCATT
* * * * *
795253 TCGTGCCGATAAT-GCACCCATATGCATTTCATTTATGGCATCCTTTCATGCCTTTTTATATACT
64 GCATGCCGATAATAG-ACCAATATACATTTCATTTATGGCATCCTTTCATGCCTTTTTATACACT
795317 ATTAAACG
128 ATTAAACG
* ** * * *
795325 TTTCATTTATGGTATCTTTTCATGCCTTTTATACACTATTATACATTTCATTTATGGCATCATTG
1 TTTCATTTATGGCAT-TTTTCATGCCACTAATACACCATTATACATTTCAATTATGGCATCATTG
** * * ** *
795390 CATGCCTTTTATAGACTAATATATGTTTCTTTTATGGCATCCTTTCATGCCTTTTTATACACTAT
65 CATGCCGATAATAGACCAATATACATTTCATTTATGGCATCCTTTCATGCCTTTTTATACACTAT
795455 TAAACG
130 TAAACG
** * * * * * * *
795461 TTTCATTTATGGCATTTTTCATGCCTTTTATACACTATTATACGTTTCATTTATGACATCCTTTC
1 TTTCATTTATGGCATTTTTCATGCCACTAATACACCATTATACATTTCAATTATGGCATCATTGC
795526 ATGC
66 ATGC
795530 ATTTTTATAC
Statistics
Matches: 176, Mismatches: 26, Indels: 7
0.84 0.12 0.03
Matches are distributed among these distances:
135 52 0.30
136 122 0.69
137 2 0.01
ACGTcount: A:0.24, C:0.21, G:0.10, T:0.45
Consensus pattern (135 bp):
TTTCATTTATGGCATTTTTCATGCCACTAATACACCATTATACATTTCAATTATGGCATCATTGC
ATGCCGATAATAGACCAATATACATTTCATTTATGGCATCCTTTCATGCCTTTTTATACACTATT
AAACG
Found at i:795374 original size:45 final size:45
Alignment explanation
Indices: 795279--795540 Score: 355
Period size: 45 Copynumber: 5.8 Consensus size: 45
795269 CCCATATGCA
* *
795279 TTTCATTTATGGCATCCTTTCATGCCTTTTTATATACTATTAAACG
1 TTTCATTTATGGCATCCTTTCATGCC-TTTTATACACTATTATACG
* * *
795325 TTTCATTTATGGTATCTTTTCATGCCTTTTATACACTATTATACA
1 TTTCATTTATGGCATCCTTTCATGCCTTTTATACACTATTATACG
* * * * *
795370 TTTCATTTATGGCATCATTGCATGCCTTTTATAGACTAATATATG
1 TTTCATTTATGGCATCCTTTCATGCCTTTTATACACTATTATACG
* *
795415 TTTCTTTTATGGCATCCTTTCATGCCTTTTTATACACTATTAAACG
1 TTTCATTTATGGCATCCTTTCATGCC-TTTTATACACTATTATACG
*
795461 TTTCATTTATGGCAT-TTTTCATGCCTTTTATACACTATTATACG
1 TTTCATTTATGGCATCCTTTCATGCCTTTTATACACTATTATACG
* *
795505 TTTCATTTATGACATCCTTTCATGCATTTTTATACA
1 TTTCATTTATGGCATCCTTTCATGC-CTTTTATACA
795541 ACATTATGCA
Statistics
Matches: 188, Mismatches: 25, Indels: 6
0.86 0.11 0.03
Matches are distributed among these distances:
44 32 0.17
45 94 0.50
46 62 0.33
ACGTcount: A:0.24, C:0.19, G:0.09, T:0.48
Consensus pattern (45 bp):
TTTCATTTATGGCATCCTTTCATGCCTTTTATACACTATTATACG
Found at i:795538 original size:136 final size:136
Alignment explanation
Indices: 795279--795534 Score: 433
Period size: 136 Copynumber: 1.9 Consensus size: 136
795269 CCCATATGCA
* *
795279 TTTCATTTATGGCATCCTTTCATGCCTTTTTATATACTATTAAACGTTTCATTTATGGTATCTTT
1 TTTCATTTATGGCATCCTTTCATGCCTTTTTATACACTATTAAACGTTTCATTTATGGCATCTTT
*
795344 TCATGCCTTTTATACACTATTATACATTTCATTTATGGCATCATTGCATGCCTTTTATAGACTAA
66 TCATGCCTTTTATACACTATTATACATTTCATTTATGACATCATTGCATGCCTTTTATAGACTAA
795409 TATATG
131 TATATG
*
795415 TTTCTTTTATGGCATCCTTTCATGCCTTTTTATACACTATTAAACGTTTCATTTATGGCAT-TTT
1 TTTCATTTATGGCATCCTTTCATGCCTTTTTATACACTATTAAACGTTTCATTTATGGCATCTTT
* * * *
795479 TCATGCCTTTTATACACTATTATACGTTTCATTTATGACATCCTTTCATGCATTTT
66 TCATGCCTTTTATACACTATTATACATTTCATTTATGACATCATTGCATGCCTTTT
795535 TATACAACAT
Statistics
Matches: 112, Mismatches: 8, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
135 54 0.48
136 58 0.52
ACGTcount: A:0.23, C:0.19, G:0.09, T:0.49
Consensus pattern (136 bp):
TTTCATTTATGGCATCCTTTCATGCCTTTTTATACACTATTAAACGTTTCATTTATGGCATCTTT
TCATGCCTTTTATACACTATTATACATTTCATTTATGACATCATTGCATGCCTTTTATAGACTAA
TATATG
Found at i:795835 original size:82 final size:81
Alignment explanation
Indices: 795566--795877 Score: 489
Period size: 81 Copynumber: 3.8 Consensus size: 81
795556 ATACATCTAG
* *
795566 TCTTTTACTCAAAGGCATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTTTGTCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTTTTGTCAAATGC
795631 ACAGCTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* * *
795647 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAATTGTCATGATCGACACCTTTTTGTCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTTTTGTCAAATGC
**
795712 ATGGCTAGGCCATTAA
66 ACAGCTAGGCCATTAA
* * *
795728 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAATTGGCATGATTAACACTTTTTTTGTCAAATG
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACAC-CTTTTTGTCAAATG
*
795793 CACAGCTAGACCATTAA
65 CACAGCTAGGCCATTAA
* * *
795810 TATTTTACTCAAATGTGTTTAACCTTTCATCTAACTGGCATGATTGACACCTTTTTGTCAAATGC
1 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTTTTGTCAAATGC
795875 ACA
66 ACA
795878 ACTTAGCCTC
Statistics
Matches: 210, Mismatches: 20, Indels: 2
0.91 0.09 0.01
Matches are distributed among these distances:
81 138 0.66
82 72 0.34
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (81 bp):
TCTTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATTGACACCTTTTTGTCAAATGC
ACAGCTAGGCCATTAA
Found at i:795835 original size:163 final size:162
Alignment explanation
Indices: 795566--795875 Score: 503
Period size: 163 Copynumber: 1.9 Consensus size: 162
795556 ATACATCTAG
*
795566 TCTTTTACTCAAAGGCATTTAACCTTTCATCTAACTGGCATAATTGACACCTTTTTGTCAAATGC
1 TCTTTTACTCAAAGGCATTTAACCTTTCATCTAACTGGCATAATTAACACCTTTTTGTCAAATGC
* * * *
795631 ACAGCTAGGCCATTAATCTTTTACTCAAAGGTATTTAACCTTTCATCTAATTGTCATGATCGACA
66 ACAGCTAGACCATTAATATTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATCGACA
795696 CCTTTTTGTCAAATGCATGGCTAGGCCATTAA
131 CCTTTTTGTCAAATGCATGGCTAGGCCATTAA
* * * *
795728 TCTTTTACTCAAAGGTATTTAACCTTTCATCTAATTGGCATGATTAACACTTTTTTTGTCAAATG
1 TCTTTTACTCAAAGGCATTTAACCTTTCATCTAACTGGCATAATTAACAC-CTTTTTGTCAAATG
* * *
795793 CACAGCTAGACCATTAATATTTTACTCAAATGTGTTTAACCTTTCATCTAACTGGCATGATTGAC
65 CACAGCTAGACCATTAATATTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATCGAC
795858 ACCTTTTTGTCAAATGCA
130 ACCTTTTTGTCAAATGCA
795876 CAACTTAGCC
Statistics
Matches: 135, Mismatches: 12, Indels: 1
0.91 0.08 0.01
Matches are distributed among these distances:
162 46 0.34
163 89 0.66
ACGTcount: A:0.29, C:0.21, G:0.12, T:0.38
Consensus pattern (162 bp):
TCTTTTACTCAAAGGCATTTAACCTTTCATCTAACTGGCATAATTAACACCTTTTTGTCAAATGC
ACAGCTAGACCATTAATATTTTACTCAAAGGTATTTAACCTTTCATCTAACTGGCATGATCGACA
CCTTTTTGTCAAATGCATGGCTAGGCCATTAA
Found at i:795939 original size:68 final size:68
Alignment explanation
Indices: 795832--796354 Score: 748
Period size: 68 Copynumber: 7.7 Consensus size: 68
795822 ATGTGTTTAA
* * * * * *
795832 CCTTTCATCTAACTGGCATGATTGACACCTTTTTGTCAAATGCACAACTTA-GCCTCAAAAGCAC
1 CCTTTCATCTAACTGGCATAATAGACACCTTTCTATCAAATGCAC-AGTTAGGCCTCAAAGGCAC
*
795896 TTAT
65 TTAG
* * *
795900 CCTTTCATCTAATTGGCATAATAGACATCTTTCTTTCAAATGCACAGTTAGGCCTCAAAGGCACT
1 CCTTTCATCTAACTGGCATAATAGACACCTTTCTATCAAATGCACAGTTAGGCCTCAAAGGCACT
795965 TAG
66 TAG
* * * *
795968 CCTTTCATCTAATTGGCATAATAGACACATTTCTATCAAATGCACAATTAGGTCTCAAAGGCACT
1 CCTTTCATCTAACTGGCATAATAGACACCTTTCTATCAAATGCACAGTTAGGCCTCAAAGGCACT
796033 TAG
66 TAG
* * *
796036 CCTTTCATCAAACTGGCATAATTGACACCTCTCTATCAAATGCACAGTTAGGCCTCAAAGGCACT
1 CCTTTCATCTAACTGGCATAATAGACACCTTTCTATCAAATGCACAGTTAGGCCTCAAAGGCACT
796101 TAG
66 TAG
* * *
796104 CCTTTCATCTAACTGGAATAATAGACACC--T-TGTCAAATGCACAGTTAGGCCTCAAAGGTACT
1 CCTTTCATCTAACTGGCATAATAGACACCTTTCTATCAAATGCACAGTTAGGCCTCAAAGGCACT
796166 TAG
66 TAG
** * ** *
796169 CCTTTCATCTAACTGATATAATTGACATATTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCACT
1 CCTTTCATCTAACTGGCATAATAGACACCTTTCTATCAAATGCACAGTTAGGCCTCAAAGGCACT
796234 TAG
66 TAG
* **
796237 CCTTTCATCTAACTGGCATAATTGACACCTTTCTATCAAATGCACAACTAGGCCTCAAAGGCACT
1 CCTTTCATCTAACTGGCATAATAGACACCTTTCTATCAAATGCACAGTTAGGCCTCAAAGGCACT
796302 TAG
66 TAG
796305 CCTTTCATCTAACTGGCATAATAGACACCTTTCTATCAAATGCACAGTTA
1 CCTTTCATCTAACTGGCATAATAGACACCTTTCTATCAAATGCACAGTTA
796355 TGCTATTAAT
Statistics
Matches: 409, Mismatches: 42, Indels: 8
0.89 0.09 0.02
Matches are distributed among these distances:
65 57 0.14
66 1 0.00
67 5 0.01
68 346 0.85
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (68 bp):
CCTTTCATCTAACTGGCATAATAGACACCTTTCTATCAAATGCACAGTTAGGCCTCAAAGGCACT
TAG
Found at i:796343 original size:269 final size:270
Alignment explanation
Indices: 795832--796354 Score: 816
Period size: 269 Copynumber: 1.9 Consensus size: 270
795822 ATGTGTTTAA
* * *
795832 CCTTTCATCTAACTGGCATGATTGACACCTTTTTGTCAAATGCACAACTTAGCCTCAAAAGCACT
1 CCTTTCATCTAACTGGAATAATAGACACC--TTTGTCAAATGCACAACTTAGCCTCAAAAGCACT
* * * * *
795897 TATCCTTTCATCTAATTGGCATAATAGACATCTTTCTTTCAAATGCACAGTTAGGCCTCAAAGGC
64 TAGCCTTTCATCTAACTGACATAATAGACATATTTCTGTCAAATGCACAGTTAGGCCTCAAAGGC
* * *
795962 ACTTAGCCTTTCATCTAATTGGCATAATAGACACATTTCTATCAAATGCACAATTAGGTCTCAAA
129 ACTTAGCCTTTCATCTAACTGGCATAATAGACACATTTCTATCAAATGCACAACTAGGCCTCAAA
*
796027 GGCACTTAGCCTTTCATCAAACTGGCATAATTGACACCTCTCTATCAAATGCACAGTTAGGCCTC
194 GGCACTTAGCCTTTCATCAAACTGGCATAATAGACACCTCTCTATCAAATGCACAGTTAGGCCTC
796092 AAAGGCACTTAG
259 AAAGGCACTTAG
* * *
796104 CCTTTCATCTAACTGGAATAATAGACACC-TTGTCAAATGCAC-AGTTAGGCCTCAAAGGTACTT
1 CCTTTCATCTAACTGGAATAATAGACACCTTTGTCAAATGCACAACTTA-GCCTCAAAAGCACTT
* *
796167 AGCCTTTCATCTAACTGATATAATTGACATATTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCA
65 AGCCTTTCATCTAACTGACATAATAGACATATTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCA
* *
796232 CTTAGCCTTTCATCTAACTGGCATAATTGACACCTTTCTATCAAATGCACAACTAGGCCTCAAAG
130 CTTAGCCTTTCATCTAACTGGCATAATAGACACATTTCTATCAAATGCACAACTAGGCCTCAAAG
* *
796297 GCACTTAGCCTTTCATCTAACTGGCATAATAGACACCTTTCTATCAAATGCACAGTTA
195 GCACTTAGCCTTTCATCAAACTGGCATAATAGACACCTCTCTATCAAATGCACAGTTA
796355 TGCTATTAAT
Statistics
Matches: 229, Mismatches: 21, Indels: 5
0.90 0.08 0.02
Matches are distributed among these distances:
268 4 0.02
269 199 0.87
272 26 0.11
ACGTcount: A:0.31, C:0.25, G:0.14, T:0.30
Consensus pattern (270 bp):
CCTTTCATCTAACTGGAATAATAGACACCTTTGTCAAATGCACAACTTAGCCTCAAAAGCACTTA
GCCTTTCATCTAACTGACATAATAGACATATTTCTGTCAAATGCACAGTTAGGCCTCAAAGGCAC
TTAGCCTTTCATCTAACTGGCATAATAGACACATTTCTATCAAATGCACAACTAGGCCTCAAAGG
CACTTAGCCTTTCATCAAACTGGCATAATAGACACCTCTCTATCAAATGCACAGTTAGGCCTCAA
AGGCACTTAG
Found at i:796627 original size:57 final size:57
Alignment explanation
Indices: 796546--796784 Score: 352
Period size: 57 Copynumber: 4.2 Consensus size: 57
796536 TTTCTTAGTT
* * ** * *
796546 TTTTTGCACATAAAGTTCTTATACGGAAATTCATAAACAAATTATGAATTTCTTAAT
1 TTTTTGCACACAAAGTGCCCATACGGAAATTCATAAACAAATTATGAATATCTTAAC
**
796603 TTTTTGCACACTCAGTGCCCATACGGAAATTCATAAACAAATTATGAATATCTTAAC
1 TTTTTGCACACAAAGTGCCCATACGGAAATTCATAAACAAATTATGAATATCTTAAC
* * *
796660 TTTTTGCACACAAAGTGCTCATATGGAAATTCATAAACAAATTATAAATATCTTAAC
1 TTTTTGCACACAAAGTGCCCATACGGAAATTCATAAACAAATTATGAATATCTTAAC
** *
796717 TTTTTGCACACAAAGTGCCCATATAGAAATTCATAAACAAATTATGAATTTCTTAAC
1 TTTTTGCACACAAAGTGCCCATACGGAAATTCATAAACAAATTATGAATATCTTAAC
796774 TTTTTGCACAC
1 TTTTTGCACAC
796785 TCAATGCCAT
Statistics
Matches: 165, Mismatches: 17, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
57 165 1.00
ACGTcount: A:0.38, C:0.17, G:0.09, T:0.35
Consensus pattern (57 bp):
TTTTTGCACACAAAGTGCCCATACGGAAATTCATAAACAAATTATGAATATCTTAAC
Found at i:798354 original size:17 final size:17
Alignment explanation
Indices: 798334--798366 Score: 50
Period size: 17 Copynumber: 1.9 Consensus size: 17
798324 ATGAATTAAA
798334 TTGA-ACATCGAATGCAT
1 TTGATACATCG-ATGCAT
798351 TTGATACATCGATGCA
1 TTGATACATCGATGCA
798367 CTAGCCATGC
Statistics
Matches: 15, Mismatches: 0, Indels: 2
0.88 0.00 0.12
Matches are distributed among these distances:
17 9 0.60
18 6 0.40
ACGTcount: A:0.33, C:0.18, G:0.18, T:0.30
Consensus pattern (17 bp):
TTGATACATCGATGCAT
Found at i:802644 original size:19 final size:17
Alignment explanation
Indices: 802620--802654 Score: 52
Period size: 17 Copynumber: 1.9 Consensus size: 17
802610 TCCTCTCATT
802620 TCTTCTTCCTTCTTCCTTA
1 TCTTCTT-C-TCTTCCTTA
802639 TCTTCTTCTCTTCCTT
1 TCTTCTTCTCTTCCTT
802655 CTCCAAACGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
17 8 0.50
18 1 0.06
19 7 0.44
ACGTcount: A:0.03, C:0.37, G:0.00, T:0.60
Consensus pattern (17 bp):
TCTTCTTCTCTTCCTTA
Done.