genome.fa.s1842.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001842.1 Hibiscus syriacus cultivar Beakdansim tig00003731_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133697

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
530--728	29	7.1	29	85	5	225	49	14	5	30	1.66
3469--3497	2	14.5	2	100	0	58	48	0	0	51	1.00
11291--11438	76	1.9	76	95	0	269	20	17	18	43	1.88
16192--16246	24	2.2	25	93	6	103	25	54	0	20	1.44
19980--20017	17	2.2	17	95	0	67	36	5	15	42	1.70
23264--23294	14	2.2	14	94	0	53	25	0	0	74	0.82
23266--23336	22	3.2	22	80	11	74	23	2	0	73	0.97
23280--23344	23	2.8	22	81	11	76	26	3	0	70	1.01
23312--23351	14	2.7	14	84	7	53	32	2	0	65	1.06
23276--23367	21	4.3	21	74	17	66	30	4	0	65	1.12
23268--23340	39	1.9	39	86	5	105	24	2	0	72	0.98
23406--23452	23	2.0	22	84	15	60	27	2	2	68	1.13
23402--23491	14	6.6	14	66	16	55	28	3	1	66	1.14
23495--23537	18	2.4	18	80	7	52	18	4	0	76	0.95
23441--23571	51	2.7	48	76	18	114	25	4	1	68	1.17
26599--26769	57	3.0	57	100	0	342	29	19	21	29	1.97
29075--29125	17	2.9	17	88	11	68	74	0	0	25	0.82
29069--29135	27	2.6	26	86	9	93	71	0	0	28	0.86
29779--29856	38	2.1	38	85	4	104	47	3	3	44	1.39
31353--31381	15	2.0	15	93	6	51	24	20	13	41	1.89
33742--33817	39	1.9	40	94	2	136	50	15	17	17	1.79
37272--37323	21	2.5	21	93	0	86	73	1	7	17	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46014--46167	81	1.9	80	85	1	209	30	12	14	42	1.82
47108--47149	22	1.9	23	85	9	61	30	2	4	61	1.29
49973--50196	95	2.4	95	88	0	322	35	16	20	28	1.94
54561--54610	9	5.3	9	76	9	55	56	2	0	42	1.11
56564--56690	63	2.0	63	83	5	161	25	22	20	31	1.98
62340--62373	16	2.1	16	88	0	50	50	0	2	47	1.16
62415--62448	16	2.0	18	88	11	54	26	2	5	64	1.30
62528--62587	28	2.1	28	84	6	75	48	1	1	48	1.21
62911--63151	130	1.9	130	91	0	401	35	13	14	36	1.86
63548--63623	35	2.2	35	95	0	134	35	0	23	40	1.55
81158--81183	6	4.3	6	100	0	52	30	0	50	19	1.48
95478--95531	10	5.4	9	79	16	54	25	35	27	11	1.90
95478--95531	20	2.7	20	94	0	90	25	35	27	11	1.90
95518--95550	14	2.4	14	94	0	57	24	39	30	6	1.79
95495--95531	10	3.7	10	86	13	58	24	37	27	10	1.88
95616--95698	33	2.6	32	86	7	114	8	36	28	26	1.86
95680--95711	14	2.3	14	94	0	55	6	31	37	25	1.81
95725--95804	29	2.7	30	90	5	126	13	26	40	20	1.89
111625--111764	23	6.0	24	75	5	117	41	18	15	24	1.89
111598--111746	70	2.1	70	86	0	199	42	20	15	21	1.88
111683--111758	12	6.4	12	69	3	55	39	15	17	27	1.90
111637--111780	46	3.1	47	78	5	145	45	18	14	22	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112423--112466	23	2.0	22	86	4	61	47	6	2	43	1.42
112974--113064	43	2.1	43	95	0	164	26	36	4	32	1.76
113052--113216	2	85.0	2	75	5	142	0	57	0	41	1.07
119991--120096	49	2.1	50	79	8	119	42	8	2	46	1.49
120458--120496	16	2.4	16	87	8	53	56	0	0	43	0.99
127894--127949	31	1.9	27	92	3	67	19	17	28	33	1.95
131616--132143	22	24.5	22	85	3	646	43	0	9	46	1.38
132167--132225	31	1.9	31	92	0	100	44	8	5	42	1.57

Tables:   1

The End!