genome.fa.s1843.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001843.1 Hibiscus syriacus cultivar Beakdansim tig00003732_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  116380

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7019--7115	32	3.3	29	81	13	101	26	6	7	59	1.47
7202--7383	90	2.0	89	98	1	355	26	11	13	48	1.76
7952--8072	30	4.0	30	97	0	233	43	19	9	27	1.82
10564--10620	21	2.7	21	83	0	78	35	22	24	17	1.95
15394--15432	15	2.7	15	85	14	55	38	2	0	58	1.12
15731--15800	29	2.5	26	80	11	77	68	1	2	27	1.12
15738--15813	14	5.6	13	72	27	61	67	1	2	28	1.12
15746--15810	22	3.2	22	62	20	59	64	1	3	30	1.18
22324--23002	182	3.7	181	91	2	1060	26	16	13	43	1.85
26340--26402	31	2.0	31	87	6	92	38	23	19	19	1.93
27077--27121	21	2.1	21	84	8	56	15	22	28	33	1.95
28903--29630	199	3.7	199	90	1	1077	28	14	15	41	1.87
29602--29653	21	2.5	21	100	0	104	36	17	9	36	1.82
29407--29852	220	2.0	220	94	0	786	29	15	14	40	1.87
30086--30132	24	2.0	24	86	0	67	48	17	2	31	1.58
31342--31375	6	5.7	6	89	0	50	17	32	5	44	1.73
32544--32587	15	2.9	15	89	0	70	29	4	45	20	1.71
32954--34229	199	6.4	198	92	1	2090	28	15	15	41	1.87
34600--34650	19	2.7	19	93	0	84	56	9	1	31	1.43
37756--38274	261	2.0	261	97	0	984	35	21	5	36	1.78
38349--38416	19	3.6	19	90	4	93	36	17	0	45	1.49
38804--40004	182	6.6	181	85	6	1574	26	15	14	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38804--39947	541	2.1	543	85	5	1519	26	15	14	43	1.85
39931--39972	21	2.0	22	90	4	68	11	16	14	57	1.66
46492--46569	35	2.2	35	79	4	86	37	1	19	42	1.59
49109--49571	112	4.1	112	90	2	732	45	13	15	25	1.83
50149--50196	23	2.1	23	84	0	60	41	18	4	35	1.70
52469--52504	18	2.0	18	88	0	54	33	2	8	55	1.44
53955--53983	2	14.5	2	100	0	58	51	0	0	48	1.00
55853--56231	84	4.6	84	80	3	365	25	20	25	29	1.99
56445--57709	106	11.9	106	93	0	2073	23	18	24	33	1.96
65517--65771	59	4.3	58	70	13	155	38	9	1	50	1.46
65510--65768	30	8.7	30	74	11	160	38	9	1	50	1.46
65510--65765	119	2.1	118	81	9	279	38	9	1	50	1.47
65599--65793	30	6.9	28	76	11	116	38	8	1	51	1.42
72344--72382	19	2.1	19	100	0	78	48	0	5	46	1.24
73348--73376	6	4.8	6	100	0	58	65	0	34	0	0.93
76663--76910	123	2.0	123	94	0	433	27	18	23	30	1.98
85927--85951	9	2.8	9	100	0	50	48	20	8	24	1.76
86054--86092	17	2.4	17	95	4	71	43	0	5	51	1.24
94212--94260	20	2.5	20	82	0	62	8	55	22	14	1.65
100341--100376	19	1.9	18	88	5	54	41	16	0	41	1.48
100440--100484	20	2.2	20	96	0	81	44	2	4	48	1.35
100573--100607	18	1.9	18	100	0	70	51	0	11	37	1.38

Tables:   1

The End!