genome.fa.s1844.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001844.1 Hibiscus syriacus cultivar Beakdansim tig00003738_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  147535

Tables:   1   

This is table  1  of  1  ( 77 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4554--4608	28	2.0	28	85	3	76	30	29	16	23	1.96
8072--8116	13	3.4	13	84	12	56	22	37	31	8	1.85
8080--8120	13	3.2	13	89	6	57	24	34	26	14	1.94
14874--14930	2	28.5	2	100	0	114	49	0	0	50	1.00
20355--20479	57	2.2	57	85	0	169	29	28	20	22	1.98
27591--27637	23	2.0	24	83	8	60	44	6	2	46	1.40
27701--27746	6	7.5	6	80	4	56	41	0	2	56	1.11
27700--27754	19	2.9	19	83	5	67	45	0	1	52	1.11
28393--28431	15	2.6	15	83	0	51	5	71	15	7	1.26
28482--28513	8	4.0	8	95	0	55	53	0	0	46	1.00
29367--29395	2	15.0	2	92	7	51	48	0	0	51	1.00
30640--30693	20	2.7	20	72	11	56	27	0	25	46	1.53
35008--35047	20	2.0	20	90	0	62	15	27	37	20	1.92
35385--35417	16	2.1	16	100	0	66	30	39	0	30	1.57
36466--36513	19	2.5	20	82	3	62	29	12	6	52	1.63
50582--50642	23	2.9	19	81	11	59	21	36	26	16	1.94
52624--52674	9	6.2	8	76	19	52	13	0	27	58	1.36
52626--52669	17	2.6	17	85	7	63	13	0	29	56	1.38
53274--53479	75	2.7	75	88	2	288	23	32	24	19	1.98
54340--54370	15	2.1	15	93	0	53	45	0	0	54	0.99
55535--55573	20	2.0	20	85	10	53	64	0	5	30	1.15
64156--64636	238	2.0	239	95	0	865	32	17	22	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70727--70852	59	2.1	59	86	2	173	47	8	11	32	1.70
74497--74546	21	2.4	21	89	0	73	28	26	22	24	1.99
75941--75981	6	7.0	6	94	5	66	29	53	17	0	1.44
79480--79509	6	5.2	6	92	8	53	16	16	16	50	1.79
83133--83188	15	3.7	15	87	0	67	12	60	14	12	1.59
89756--89806	19	2.5	22	75	21	65	45	0	11	43	1.40
90322--90359	19	2.0	19	89	0	58	42	0	10	47	1.38
91936--91974	16	2.4	16	95	0	69	25	5	17	51	1.66
96185--96239	21	2.6	21	91	0	92	30	21	16	30	1.95
96357--96396	14	2.6	16	88	7	57	60	2	10	27	1.42
96573--96642	31	2.3	31	87	5	97	37	24	2	35	1.70
101128--101164	19	2.0	19	94	5	67	27	0	2	70	1.01
101485--101534	14	3.9	14	75	20	63	8	10	26	56	1.60
101486--101535	24	2.1	24	96	0	91	8	10	24	58	1.57
102462--102516	16	3.4	16	89	0	83	10	12	21	54	1.68
104733--104781	25	1.9	25	83	4	62	46	12	14	26	1.79
105519--105565	24	1.9	25	83	12	62	29	0	4	65	1.11
105890--105927	19	2.0	19	90	10	60	31	0	5	63	1.17
107481--107535	2	27.5	2	92	0	92	45	0	0	54	0.99
111272--111304	16	2.1	16	94	0	57	33	27	6	33	1.81
111713--111832	35	3.3	36	89	5	181	43	20	5	31	1.73
111764--111824	21	3.2	21	65	29	64	42	21	4	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111715--111859	35	4.1	36	82	11	133	42	19	5	33	1.74
129214--129312	21	4.8	20	72	6	72	38	22	18	21	1.93
129299--129508	20	10.5	20	83	5	228	36	25	18	20	1.95
130191--130237	24	2.0	24	87	8	69	25	14	21	38	1.92
130412--130436	12	2.1	12	100	0	50	72	0	28	0	0.86
132720--132950	33	6.7	34	81	14	237	46	18	22	13	1.83
132734--132950	19	12.4	19	77	19	249	46	17	21	13	1.83
132820--132972	33	4.5	33	74	16	159	45	17	22	13	1.84
132762--132972	52	4.0	52	99	0	413	45	17	23	13	1.83
132979--133094	53	2.2	53	98	1	225	13	24	18	43	1.86
132997--133094	19	5.4	19	84	13	143	14	22	17	45	1.84
133201--133237	14	2.6	14	91	0	65	45	21	0	32	1.52
135165--135285	19	6.6	19	81	10	135	45	23	19	11	1.83
135281--135376	19	5.3	19	79	13	112	9	14	30	45	1.76
135424--135706	93	3.1	93	96	0	532	46	18	12	22	1.82
137412--137501	14	5.7	14	72	23	72	43	22	24	10	1.83
137404--137518	33	3.5	33	95	0	212	46	20	23	10	1.81
137404--137523	19	7.1	18	69	24	84	45	20	24	10	1.83
137535--137591	14	3.7	14	75	20	60	8	24	22	43	1.81
137519--137599	33	2.5	33	95	0	144	8	22	22	46	1.78
137576--137651	21	3.7	21	83	3	109	11	25	17	46	1.82
137575--137652	41	1.9	41	97	0	147	12	25	16	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
137753--137796	19	2.3	19	100	0	88	45	22	22	9	1.80
138002--138056	22	2.5	22	81	0	74	20	16	40	23	1.91
138203--138396	20	9.6	20	82	5	221	19	19	25	35	1.95
138203--138396	60	3.2	60	83	0	253	19	19	25	35	1.95
138383--138465	21	4.0	21	73	6	78	25	16	24	33	1.96
138363--138461	42	2.4	43	77	11	100	21	18	23	37	1.94
144716--144770	24	2.3	24	81	6	67	41	0	3	54	1.18
144748--144778	16	1.9	16	93	0	53	35	0	3	61	1.12
144791--144836	20	2.3	20	84	0	56	45	0	4	50	1.21
145570--145594	2	12.5	2	100	0	50	52	0	0	48	1.00
145853--145894	2	21.0	2	100	0	84	50	0	0	50	1.00

Tables:   1

The End!