Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001845.1 Hibiscus syriacus cultivar Beakdansim tig00003740_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100316

Tables:   1   

This is table  1  of  1  ( 57 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6402--6467
27
2.4
27
82
10
71
9
7
4
78
1.07
6655--6714
24
2.5
24
91
0
93
55
26
0
18
1.43
7572--7879
102
3.0
103
93
0
537
49
19
15
15
1.79
16644--16669
2
13.0
2
100
0
52
0
50
0
50
1.00
32759--33111
139
2.5
144
89
4
522
35
10
10
43
1.73
34658--34695
2
19.0
2
100
0
76
50
0
0
50
1.00
35706--35884
81
2.2
82
80
8
195
30
16
18
34
1.93
35812--36039
124
1.8
124
82
5
291
29
17
16
36
1.92
35703--36047
41
8.4
41
71
7
198
31
17
16
34
1.93
39521--39580
21
2.8
22
84
2
77
20
5
20
55
1.62
39780--39915
43
3.2
43
77
6
132
27
20
22
29
1.99
42236--42271
8
4.6
8
93
6
65
25
0
0
75
0.81
42236--42271
15
2.3
16
95
4
65
25
0
0
75
0.81
43624--43661
3
12.3
3
84
15
51
34
2
0
63
1.09
43624--43669
15
3.2
14
87
12
67
36
2
0
60
1.09
45096--45132
13
2.8
14
88
12
60
18
0
0
81
0.70
55413--56290
105
8.3
105
96
0
1567
34
24
17
23
1.96
58442--58543
4
26.0
4
68
14
52
20
8
2
67
1.31
58470--58494
10
2.5
10
100
0
50
12
8
0
80
0.92
59941--59975
16
2.1
17
89
5
54
62
0
0
37
0.95
62369--62394
2
13.0
2
100
0
52
50
0
0
50
1.00
65342--65523
45
4.0
45
96
0
310
24
8
43
23
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72543--72646
54
1.9
54
100
0
208
40
22
7
29
1.81
81143--81745
127
4.7
128
95
2
1074
20
24
22
32
1.98
82139--82244
34
3.1
34
86
1
142
36
4
4
53
1.43
82750--82848
21
4.9
21
79
11
109
22
24
35
18
1.96
82744--82848
42
2.6
40
88
5
142
22
25
33
18
1.97
82858--82903
20
2.3
20
88
0
65
17
13
43
26
1.85
84415--84464
18
2.9
17
79
5
55
60
4
0
36
1.16
84605--84671
25
2.6
25
73
2
62
56
0
0
43
0.99
86680--86709
8
3.6
8
91
8
51
46
0
0
53
1.00
87504--87551
19
2.7
18
87
6
62
37
10
18
33
1.85
87541--87582
22
1.9
22
85
0
57
50
16
14
19
1.79
89397--89434
15
2.5
15
95
0
67
44
13
21
21
1.85
90566--90611
23
2.0
24
86
4
67
32
19
26
21
1.97
90599--90641
20
2.1
22
87
12
65
23
20
27
27
1.99
90760--90815
23
2.4
23
87
0
85
32
25
25
17
1.97
92906--92940
8
4.4
8
100
0
70
37
0
11
51
1.38
93599--93639
16
2.6
16
88
7
57
31
0
2
65
1.05
93740--93792
2
27.0
2
92
3
90
49
0
1
49
1.12
94285--94341
30
1.9
29
89
3
87
40
7
10
42
1.66
94351--94675
22
12.2
29
66
26
125
54
12
0
32
1.39
94354--94415
29
2.0
32
90
9
103
59
11
0
29
1.32
94363--94565
78
2.6
83
87
8
275
54
13
0
31
1.40
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
94504--94668
52
3.2
52
90
5
241
52
12
0
34
1.40
94363--95062
131
5.4
129
75
16
494
52
12
0
34
1.41
94683--94725
20
2.2
20
83
8
52
53
6
0
39
1.28
94877--94984
32
3.7
31
70
23
108
51
11
0
36
1.44
94861--94979
54
2.2
53
93
1
202
52
10
0
36
1.41
94965--95039
22
3.2
23
71
17
73
53
17
1
28
1.52
94683--95212
53
10.1
54
75
14
454
52
11
0
36
1.42
94683--95212
107
5.0
108
73
17
449
52
11
0
36
1.42
95098--95146
22
2.2
22
88
3
71
55
14
0
30
1.40
95096--95138
22
2.0
22
100
0
86
51
13
0
34
1.42
95152--95200
22
2.2
21
82
10
62
53
14
0
32
1.41
95194--95263
15
4.5
15
75
20
63
54
5
0
40
1.24
98975--99070
50
2.0
46
86
8
129
42
6
5
45
1.51

Tables:   1

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