Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001846.1 Hibiscus syriacus cultivar Beakdansim tig00003741_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  130816

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
423--540
41
2.9
41
85
1
157
22
17
21
38
1.93
605--650
19
2.4
19
85
3
56
21
17
30
30
1.96
616--652
19
1.9
19
94
0
65
21
16
29
32
1.95
4973--5033
29
2.1
30
81
9
72
32
21
4
40
1.74
8643--8695
21
2.5
21
96
0
97
28
33
9
28
1.88
9847--9882
18
2.1
17
89
5
54
63
2
0
33
1.08
12381--12441
29
2.1
30
81
9
72
32
21
4
40
1.74
28099--28161
33
1.9
32
87
9
92
17
23
38
20
1.93
28820--28873
22
2.4
21
73
11
54
50
0
5
44
1.25
29103--29160
3
19.3
3
96
0
107
32
1
0
65
1.03
29880--29914
3
11.7
3
100
0
70
31
0
0
68
0.90
38041--38081
2
20.5
2
100
0
82
51
0
0
48
1.00
53322--53353
15
2.1
15
94
0
55
25
34
0
40
1.56
58692--58732
21
2.0
20
85
4
55
17
24
36
21
1.94
72610--72648
14
2.8
14
84
11
53
30
0
15
53
1.42
78957--78987
2
16.0
2
93
6
55
48
0
0
51
1.00
78957--78985
15
1.9
15
100
0
58
48
0
0
51
1.00
80795--80899
37
2.8
37
82
0
129
40
14
12
32
1.83
81417--81467
19
2.7
19
82
8
52
39
1
0
58
1.09
81501--81526
2
13.0
2
100
0
52
50
0
0
50
1.00
81621--81660
19
2.1
19
85
0
53
20
2
7
70
1.24
81773--81841
16
4.5
15
72
18
61
14
8
0
76
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
86229--86310
16
5.3
16
72
10
64
78
8
12
1
1.03
86243--86291
8
5.9
8
85
4
53
79
8
12
0
0.93
86242--86291
9
5.9
9
86
11
70
80
8
12
0
0.92
86237--86299
30
2.1
29
85
8
83
79
7
12
0
0.93
87925--88987
106
10.0
106
93
0
1761
33
24
18
22
1.97
89720--89822
37
2.8
37
85
2
136
41
14
14
29
1.85
90285--90329
21
2.0
23
87
8
67
37
6
0
55
1.26
90651--90756
4
26.0
4
76
9
54
23
5
0
70
1.08
90681--90750
25
2.8
25
89
2
97
15
7
0
77
0.98
90681--90767
8
10.2
8
74
16
61
14
6
0
78
0.95
90680--90756
24
3.2
25
85
5
95
16
6
0
76
0.98
96309--96361
23
2.3
23
81
9
65
75
7
3
13
1.15
97418--97483
28
2.4
28
92
2
107
16
4
42
36
1.69
97989--98387
39
10.3
39
90
0
611
35
19
17
26
1.94
98390--98534
77
1.9
78
83
8
190
38
13
15
32
1.86
98514--98588
39
1.9
39
86
0
105
34
17
20
28
1.95
98536--98649
60
1.9
60
85
0
156
35
14
17
32
1.90
98596--98674
39
2.0
39
90
0
122
36
12
16
34
1.87
103855--103926
29
2.4
30
81
6
85
56
1
13
27
1.46
110218--110299
31
2.6
32
80
14
91
39
6
12
42
1.67
113122--113213
43
2.1
43
93
0
157
39
9
6
44
1.63
118014--119820
602
3.0
602
99
0
3551
32
18
25
24
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
124175--124218
12
3.8
12
90
3
63
11
9
47
31
1.71
124173--124218
24
2.0
24
91
4
76
10
10
47
30
1.73
124236--124300
24
2.6
25
79
16
73
44
0
0
55
0.99
127031--127058
1
28.0
1
100
0
56
100
0
0
0
0.00
130282--130341
25
2.4
25
89
8
88
50
0
0
50
1.00
130294--130341
14
3.6
14
78
21
59
50
0
0
50
1.00

Tables:   1

The End!