genome.fa.s1847.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001847.1 Hibiscus syriacus cultivar Beakdansim tig00003742_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  155853

Tables:   1   

This is table  1  of  1  ( 63 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
132--162	15	2.1	15	93	0	53	54	0	0	45	0.99
1204--1236	17	1.9	17	93	0	57	30	12	12	45	1.78
2515--2556	19	2.2	19	95	0	75	40	7	9	42	1.65
3590--3622	2	17.0	2	93	6	59	51	0	0	48	1.00
18187--18272	38	2.3	38	97	0	163	38	23	11	26	1.89
22419--22472	20	2.7	20	80	8	65	16	22	27	33	1.95
24738--24914	89	2.0	88	95	1	318	24	12	19	42	1.86
31374--31398	12	2.1	12	100	0	50	48	8	0	44	1.32
31574--31606	17	1.9	17	93	0	57	51	0	0	48	1.00
31567--31607	17	2.5	16	80	7	55	48	0	0	51	1.00
49270--49301	16	2.0	16	93	0	55	71	0	6	21	1.07
49301--49334	13	2.4	15	85	14	54	5	32	5	55	1.48
51890--52235	136	2.5	135	87	2	471	29	10	13	45	1.78
56082--56110	2	14.5	2	100	0	58	51	0	0	48	1.00
67393--67422	14	2.2	13	94	5	51	53	10	0	36	1.35
70978--71046	21	3.3	20	75	13	68	24	23	20	31	1.98
71866--72116	63	4.0	61	91	3	358	36	24	19	20	1.95
71888--72295	105	3.9	103	84	5	548	35	25	19	20	1.95
71888--72337	63	7.1	62	81	8	291	36	24	19	20	1.95
71888--72295	42	9.7	43	80	8	368	35	25	19	20	1.95
71866--72346	42	11.5	42	82	7	309	36	23	19	20	1.95
72354--72401	21	2.3	21	96	0	87	16	18	33	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76687--76728	17	2.6	16	79	17	50	33	0	0	66	0.92
77000--77089	43	2.1	43	87	0	126	33	11	20	35	1.88
84017--84123	52	2.0	53	90	3	171	42	15	22	19	1.89
87436--88551	557	2.0	557	99	0	2223	38	18	13	29	1.89
91619--91674	29	1.9	29	89	7	87	41	5	3	50	1.43
95340--95390	21	2.5	20	78	12	59	52	1	0	45	1.12
97816--97890	35	2.1	35	92	0	123	33	29	28	9	1.88
97968--98042	24	3.2	23	84	5	105	36	21	17	25	1.95
97972--98057	23	3.7	23	84	3	109	38	19	17	24	1.93
97951--98064	47	2.4	47	80	2	131	40	20	14	24	1.90
100533--100572	15	2.7	15	100	0	80	25	25	37	12	1.91
100514--100589	8	9.6	8	79	18	81	25	23	35	15	1.94
100564--100593	13	2.3	13	100	0	60	20	23	40	16	1.91
100562--100628	31	2.2	31	88	0	98	16	20	44	17	1.86
100534--100589	21	2.6	22	91	8	89	25	25	35	14	1.93
100562--100624	13	4.5	13	70	18	54	17	22	42	17	1.89
104202--104390	95	2.0	95	95	0	342	31	13	17	37	1.89
107954--107987	2	17.0	2	100	0	68	50	0	0	50	1.00
115204--115281	33	2.4	33	85	8	97	38	0	1	60	1.05
117000--117047	21	2.3	21	85	0	60	25	39	12	22	1.89
117051--117144	21	4.5	21	92	5	129	18	35	26	20	1.95
117665--117761	33	2.9	34	85	3	133	55	4	3	37	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117663--117768	34	3.2	33	82	8	133	54	4	2	37	1.36
118148--118502	126	2.8	126	97	0	674	31	19	26	22	1.98
118571--118611	8	5.2	8	82	5	57	36	29	0	34	1.58
121604--121640	12	2.9	13	88	8	58	45	0	0	54	1.00
121598--121635	13	3.0	12	88	11	58	50	0	0	50	1.00
124933--124966	15	2.3	15	89	0	50	32	0	5	61	1.20
128305--128362	27	2.2	26	79	8	64	15	17	8	58	1.61
130243--131113	105	8.3	105	95	0	1467	32	25	18	22	1.97
131236--131341	37	2.9	38	85	5	137	24	21	15	38	1.92
131327--131444	33	3.8	33	80	16	144	37	20	9	33	1.85
131376--131432	27	2.1	27	90	6	89	40	15	8	35	1.79
131434--131704	83	3.2	83	85	1	371	33	26	18	21	1.96
131953--131986	15	2.3	15	89	0	50	32	0	5	61	1.20
135848--135896	17	2.8	17	90	3	71	34	10	24	30	1.89
154524--154554	14	2.2	14	94	0	53	90	0	3	6	0.55
154530--154575	21	2.2	21	84	0	56	86	0	6	6	0.69
154524--154562	13	2.9	14	92	7	71	87	0	5	7	0.68
154536--154575	21	1.9	21	89	0	62	85	0	7	7	0.76
155490--155725	54	4.4	55	81	8	256	31	14	27	26	1.95

Tables:   1

The End!