genome.fa.s1848.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001848.1 Hibiscus syriacus cultivar Beakdansim tig00003743_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78181

Tables:   1   

This is table  1  of  1  ( 56 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7492--7545	25	2.2	25	100	0	108	7	16	55	20	1.65
27445--27537	21	4.6	20	78	4	96	38	18	24	18	1.92
27442--27537	41	2.3	41	98	0	183	39	17	23	18	1.92
27445--27537	20	4.6	20	78	4	96	38	18	24	18	1.92
27526--27619	20	4.7	20	77	2	80	35	24	17	23	1.95
27523--27600	41	1.9	41	83	0	102	41	21	15	21	1.90
28195--28360	20	9.1	19	74	16	136	12	22	22	42	1.87
28248--28335	33	2.6	33	92	1	140	11	25	25	38	1.89
30118--30176	29	2.0	29	86	0	82	18	8	11	61	1.55
30351--30473	42	2.9	42	80	2	122	22	36	17	22	1.95
30407--30473	21	3.2	21	66	6	55	23	35	20	19	1.95
31832--31867	14	2.6	14	95	0	63	30	0	25	44	1.54
32046--32163	19	6.7	19	66	19	76	13	23	20	42	1.88
32050--32143	33	2.8	33	98	0	179	12	24	19	43	1.85
34427--34451	12	2.1	12	100	0	50	0	28	0	72	0.86
35928--35964	14	2.6	14	86	0	56	48	21	0	29	1.50
36329--36379	20	2.5	20	93	0	84	33	23	23	19	1.97
36405--36470	18	3.8	19	81	16	81	13	19	18	48	1.81
38434--38500	19	3.5	19	83	4	89	37	23	23	14	1.93
38489--38546	14	3.9	14	79	16	71	48	25	17	8	1.75
38473--38551	32	2.4	33	95	2	142	46	24	18	10	1.80
38558--38653	19	5.6	17	72	21	78	11	19	22	45	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38580--38637	14	3.9	14	79	16	71	8	17	25	48	1.75
38563--38653	32	2.8	33	94	3	166	10	18	23	47	1.80
39143--39187	18	2.5	18	85	0	63	15	15	42	26	1.87
40507--40544	20	1.9	20	88	0	58	50	21	15	13	1.78
40808--40851	22	2.0	22	100	0	88	18	13	45	22	1.84
41039--41091	20	2.7	20	93	0	88	24	18	28	28	1.98
41059--41136	41	1.9	41	83	0	102	20	16	23	39	1.92
41122--41217	41	2.3	41	98	0	147	18	23	17	39	1.92
41122--41214	20	4.6	20	78	4	96	18	24	18	38	1.92
42532--42575	23	1.9	23	85	0	61	43	15	11	29	1.82
48787--48831	21	2.1	21	88	8	65	60	0	0	40	0.97
48781--48823	17	2.4	17	84	7	50	58	0	0	41	0.98
64823--64872	23	2.1	22	82	10	55	26	6	2	66	1.26
65003--65213	21	10.6	20	71	18	145	25	23	20	30	1.98
65023--65151	20	6.7	20	72	19	121	23	24	18	34	1.96
65023--65188	55	2.8	58	82	12	198	24	24	18	33	1.97
65079--65213	41	3.3	41	88	3	173	25	22	20	31	1.98
66283--66333	3	17.0	3	100	0	102	66	0	0	33	0.92
68504--68746	37	6.8	38	71	21	147	46	7	5	40	1.56
68539--68734	37	5.4	34	77	12	180	45	7	5	41	1.56
68711--68759	23	2.1	24	92	3	82	48	6	4	40	1.47
68676--68806	59	2.2	60	87	6	196	45	7	4	41	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68779--68870	39	2.4	40	82	8	111	47	6	2	43	1.41
68783--68885	38	2.7	38	78	11	106	45	6	2	44	1.45
69544--69804	81	3.2	81	73	10	294	27	21	18	32	1.97
69479--70320	84	10.2	82	76	7	749	24	21	24	29	1.99
69479--70226	166	4.5	166	89	4	957	25	20	23	30	1.99
69605--70320	246	2.9	246	79	6	693	24	21	24	29	1.99
73616--73659	18	2.4	18	96	0	79	65	9	13	11	1.46
76984--77304	38	8.9	35	75	15	214	44	7	4	43	1.52
76995--77304	74	4.3	74	79	13	267	45	7	4	43	1.50
77138--77191	26	2.1	26	92	0	90	48	5	3	42	1.44
77102--77228	64	2.0	64	96	0	236	44	7	4	42	1.54
77143--77203	26	2.3	26	80	5	70	47	9	3	39	1.53

Tables:   1

The End!