genome.fa.s1849.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001849.1 Hibiscus syriacus cultivar Beakdansim tig00003745_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27775

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1681--1744	19	3.4	19	86	2	76	43	28	17	10	1.82
1715--1806	31	2.9	31	90	3	148	47	21	19	10	1.80
1697--1811	19	6.7	19	74	20	94	46	23	20	10	1.81
1807--1902	19	5.3	19	81	13	121	8	15	30	45	1.75
1950--2230	93	3.1	93	97	1	532	45	18	12	22	1.83
3925--4014	14	5.7	14	72	23	72	43	23	24	8	1.82
3917--4030	33	3.5	33	96	1	212	46	21	22	9	1.80
3939--4035	14	5.7	19	70	23	81	44	22	22	10	1.83
4054--4149	21	4.8	20	82	6	122	12	23	17	45	1.83
4055--4150	41	2.4	40	89	1	138	11	25	17	45	1.82
4228--4299	33	2.2	33	92	0	117	48	18	22	11	1.79
4479--4533	22	2.5	22	81	0	74	20	16	40	23	1.91
4680--4873	20	9.6	20	82	5	221	19	19	25	35	1.95
4680--4873	60	3.2	60	83	0	253	19	19	25	35	1.95
5652--5689	2	19.0	2	100	0	76	50	0	0	50	1.00
7648--7690	10	4.3	10	81	0	59	30	37	0	32	1.58
7654--7693	20	2.0	20	95	0	71	25	37	0	37	1.56
7699--7755	12	5.2	12	72	20	61	33	0	1	64	1.04
7700--7763	15	4.1	17	70	22	50	31	0	1	67	1.00
7699--7762	22	3.0	21	82	13	85	32	0	1	65	1.02
14302--15376	191	5.6	191	95	0	1835	42	10	16	30	1.82
17769--17862	23	4.2	22	82	9	70	31	25	24	18	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17776--17850	21	3.4	21	83	7	78	33	28	22	16	1.95
17786--17874	46	2.0	46	84	4	119	30	26	25	16	1.97
17786--17868	23	3.7	23	87	3	107	28	27	25	18	1.98
20385--20428	23	1.9	23	90	0	70	15	22	11	50	1.76
20852--20901	2	25.5	2	95	4	93	48	0	0	52	1.00
21677--21703	2	13.5	2	100	0	54	51	0	0	48	1.00
22798--22948	41	3.7	41	93	0	266	21	20	23	34	1.97
22937--22990	22	2.4	23	90	3	92	16	16	27	38	1.90
23604--23645	6	7.5	6	97	2	63	0	16	54	28	1.42

Tables:   1

The End!