Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001850.1 Hibiscus syriacus cultivar Beakdansim tig00003746_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52702

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11967--12014
16
2.9
17
81
9
55
27
4
4
64
1.30
15089--15131
11
3.8
11
84
6
50
32
2
2
62
1.20
17792--17836
19
2.5
19
79
13
51
60
0
2
37
1.09
21564--21632
21
3.3
21
85
0
84
21
17
50
10
1.75
26097--26192
48
2.0
48
83
0
120
42
9
8
39
1.67
26191--26343
78
1.9
79
84
1
200
45
9
13
32
1.76
32674--33834
580
2.0
580
98
1
2229
37
17
11
33
1.86
33897--34325
233
1.8
231
83
6
562
35
15
15
33
1.90
46665--46698
17
2.0
17
94
0
59
41
11
20
26
1.87
46862--47072
20
10.4
20
73
13
146
41
22
18
17
1.90
46938--47072
42
3.3
42
89
2
211
39
23
19
17
1.92
46862--47072
42
5.2
40
77
11
207
41
22
18
17
1.90
47177--47227
6
8.5
6
100
0
102
33
50
15
0
1.44
47726--47791
6
11.7
6
98
1
104
0
18
53
28
1.45
47894--48013
22
5.7
21
82
11
156
20
17
28
34
1.95
47893--48013
42
2.9
42
91
2
190
19
17
28
33
1.95
47899--48031
42
3.2
41
76
14
128
18
18
27
36
1.94
48025--48076
19
2.7
19
84
3
59
11
19
26
42
1.85
48640--48742
15
7.0
16
65
25
57
47
0
0
52
1.00
50239--50329
21
4.4
21
83
8
123
30
24
21
23
1.99
50280--50352
20
3.6
20
78
10
94
35
17
21
24
1.95
50239--50367
21
6.2
20
75
12
93
32
22
20
24
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50259--50352
41
2.3
41
98
0
179
34
19
22
24
1.97
51129--51283
21
7.5
21
73
18
103
23
21
21
32
1.98
51129--51279
62
2.4
62
93
2
250
23
21
21
33
1.97
51163--51299
21
6.6
21
81
8
163
22
21
24
32
1.98

Tables:   1

The End!