Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001851.1 Hibiscus syriacus cultivar Beakdansim tig00003748_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  171512

Tables:   1   

This is table  1  of  1  ( 61 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1402--2064
182
3.7
183
94
2
1153
35
14
15
34
1.88
4284--4347
23
2.8
23
87
0
92
35
6
20
37
1.78
4284--4356
23
3.2
23
82
7
85
34
5
20
39
1.76
4706--4767
21
2.8
23
80
7
74
35
6
20
37
1.79
4728--4776
23
2.1
23
88
7
73
34
2
20
42
1.64
4712--4781
21
3.2
21
75
15
61
32
5
21
40
1.77
5126--5189
23
2.8
23
87
0
92
35
6
20
37
1.78
5126--5198
23
3.2
23
82
7
85
34
5
20
39
1.76
5201--5239
20
2.0
20
89
0
60
25
15
10
48
1.76
4186--5602
423
3.3
426
95
4
2586
40
8
13
38
1.75
5808--5844
18
2.1
18
89
0
56
32
5
10
51
1.60
5800--5846
24
2.0
24
86
0
67
34
4
14
46
1.64
13729--13799
30
2.4
30
97
0
133
29
32
18
19
1.96
21101--21126
2
13.0
2
100
0
52
50
0
0
50
1.00
21338--21377
16
2.6
15
84
4
53
75
0
0
25
0.81
21339--21377
15
2.5
16
83
4
53
76
0
0
23
0.78
23324--23361
17
2.2
18
85
4
51
34
18
10
36
1.85
23704--23790
31
2.9
30
77
8
95
48
14
10
26
1.76
23582--23779
110
1.8
108
81
6
247
49
10
10
29
1.70
24115--24156
12
3.5
12
86
0
57
61
2
0
35
1.09
34333--34362
2
15.5
2
93
6
53
50
0
0
50
1.00
37572--37745
96
1.8
96
93
0
303
32
9
12
45
1.74
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38256--38307
3
17.7
3
92
4
88
36
0
0
63
0.95
39906--39944
2
19.5
2
100
0
78
48
0
0
51
1.00
51696--51758
7
9.1
7
78
16
60
76
0
14
9
1.02
51716--51765
19
2.7
19
90
3
75
78
0
14
8
0.97
51709--51783
26
2.8
27
82
9
84
76
0
16
8
1.02
51696--51758
8
8.0
8
74
19
53
76
0
14
9
1.02
51719--51778
19
3.2
19
86
9
70
76
0
15
8
1.00
51696--51772
33
2.3
34
84
11
104
76
0
12
10
1.02
52639--52984
136
2.6
136
91
3
542
35
17
21
25
1.95
52927--52980
17
3.1
17
70
15
56
48
11
16
24
1.79
53255--53297
3
14.7
3
90
4
70
37
0
0
62
0.95
55832--55866
17
2.1
17
88
0
52
57
2
2
37
1.29
56715--56774
27
2.2
27
87
0
84
20
16
8
55
1.67
57013--57047
18
1.9
18
88
0
52
45
5
5
42
1.51
62905--62952
24
2.0
24
95
0
87
43
20
4
31
1.71
67555--67583
2
14.5
2
100
0
58
51
0
0
48
1.00
79481--79535
21
2.5
21
82
14
58
43
1
0
54
1.10
80798--80848
23
2.2
24
92
3
86
5
11
50
31
1.62
97341--97444
49
2.1
50
89
1
165
50
18
10
21
1.76
98448--98472
2
12.5
2
100
0
50
52
0
0
48
1.00
98874--98939
29
2.3
29
80
15
75
42
1
4
51
1.31
114657--114711
26
2.2
25
93
3
92
23
18
1
56
1.51
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
120121--120171
22
2.2
22
82
10
57
45
3
1
49
1.32
120192--120224
15
2.1
16
88
5
50
36
0
0
63
0.95
120923--120954
14
2.3
14
94
0
55
37
9
0
53
1.34
121948--121988
22
1.9
22
90
5
66
58
2
0
39
1.11
121970--122001
15
2.1
15
94
0
55
71
0
0
28
0.86
122442--122530
2
46.5
2
90
8
132
44
1
0
53
1.07
122537--122906
77
5.0
75
74
14
218
43
4
8
43
1.55
122616--122932
39
8.6
38
78
14
283
44
4
5
45
1.47
122653--123042
141
2.7
146
82
8
414
44
3
6
45
1.47
122774--122953
39
4.6
40
87
5
226
46
5
4
43
1.47
122917--122984
29
2.3
30
87
5
93
48
4
4
42
1.43
123002--123048
25
1.9
24
82
4
58
36
0
10
53
1.36
145720--145750
3
10.3
3
100
0
62
32
0
0
67
0.91
152301--152370
30
2.4
30
80
2
79
47
1
7
44
1.39
160625--160661
2
18.5
2
100
0
74
51
0
0
48
1.00
168228--168269
21
1.9
23
85
9
61
71
2
2
23
1.10
170921--170973
21
2.5
21
81
6
63
33
0
15
50
1.44

Tables:   1

The End!