genome.fa.s1855.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001855.1 Hibiscus syriacus cultivar Beakdansim tig00003755_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  162707

Tables:   1   

This is table  1  of  1  ( 102 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
675--715	21	1.9	22	85	5	57	29	7	0	63	1.21
1467--1535	29	2.4	29	79	13	90	37	10	7	44	1.66
2552--2590	18	2.1	19	85	4	53	58	0	2	38	1.12
6005--6037	16	2.0	17	94	5	59	33	6	12	48	1.65
6264--6310	22	2.1	22	81	14	53	53	2	2	42	1.25
10483--10540	21	2.8	21	83	0	80	22	12	29	36	1.90
13205--13231	3	9.0	3	100	0	54	66	0	0	33	0.92
14562--15180	128	4.8	128	95	0	1096	23	23	18	33	1.97
15363--15463	34	3.0	34	82	2	123	38	2	2	55	1.30
15984--16053	21	3.3	20	90	5	95	18	27	35	18	1.94
16057--16104	21	2.3	21	85	0	60	22	10	39	27	1.87
17821--17909	34	2.7	31	79	6	88	58	2	0	39	1.11
17821--17900	34	2.4	33	81	8	92	60	1	0	38	1.05
20441--20570	57	2.3	57	85	2	163	30	13	29	27	1.94
23700--24000	20	14.9	20	75	15	205	39	23	20	16	1.92
23761--23937	62	2.9	62	75	12	177	37	24	20	16	1.93
23700--24012	40	7.8	40	81	8	323	39	23	20	16	1.92
23781--24012	20	11.4	20	81	9	229	37	24	21	17	1.94
23702--24012	60	5.1	60	74	13	228	39	23	20	16	1.92
24123--24176	6	9.0	6	100	0	108	33	50	16	0	1.46
24913--24962	6	8.3	6	100	0	100	0	16	50	34	1.45
25073--25123	20	2.5	20	87	6	68	13	21	23	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25086--25124	20	2.0	20	100	0	78	15	23	20	41	1.90
25111--25164	20	2.7	20	91	0	81	12	20	16	50	1.78
25151--25201	19	2.6	19	87	3	66	17	17	17	47	1.84
25535--25581	21	2.2	21	100	0	94	27	34	19	19	1.96
25596--25959	21	17.6	21	73	13	240	20	19	24	36	1.95
25602--25976	42	9.1	40	84	6	280	20	18	24	37	1.94
25621--25751	40	3.2	40	86	6	192	19	18	24	38	1.93
25696--25938	63	3.9	62	78	12	273	21	18	23	36	1.95
25735--25976	84	2.9	83	92	2	382	20	19	23	36	1.95
25722--25989	21	12.9	21	69	16	157	20	19	22	37	1.94
26094--26212	21	5.7	19	70	20	60	35	25	17	21	1.95
26122--26279	42	3.8	41	72	15	126	33	28	17	20	1.95
26230--26279	21	2.4	21	89	0	73	32	30	20	18	1.96
41338--41362	2	12.5	2	100	0	50	48	0	0	52	1.00
43322--43399	35	2.2	35	93	0	129	43	20	0	35	1.52
43322--43415	35	2.7	35	88	0	116	42	24	0	32	1.55
43559--43830	143	1.9	144	85	5	379	37	5	9	47	1.60
44337--44417	35	2.3	36	82	2	101	33	1	23	41	1.62
45630--45672	18	2.2	20	84	15	56	39	4	0	55	1.20
45649--45684	18	1.9	19	88	5	56	36	8	0	55	1.30
48300--48324	12	2.1	12	100	0	50	40	8	36	16	1.77
48353--48408	29	1.9	29	92	0	94	10	35	30	23	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48503--48530	14	2.0	14	100	0	56	7	28	42	21	1.79
48483--48516	10	3.4	10	84	15	52	8	29	38	23	1.85
50924--50991	3	22.3	3	80	8	75	58	0	2	38	1.13
51219--51491	84	3.2	84	84	2	352	22	20	27	29	1.99
51531--52538	106	9.5	106	93	0	1678	22	17	25	33	1.96
55002--55034	17	1.9	17	93	0	57	72	9	12	6	1.26
57629--57694	3	22.3	3	80	9	73	59	0	3	37	1.13
58298--58325	14	2.0	14	100	0	56	21	42	28	7	1.79
58347--58392	23	2.0	23	91	8	76	26	23	39	10	1.88
58410--58494	29	2.9	29	87	0	134	20	30	34	15	1.93
58553--58609	29	2.0	29	92	0	96	17	35	33	14	1.90
59210--59242	17	1.9	17	93	0	57	66	0	0	33	0.92
59315--59360	16	3.1	14	81	9	56	63	0	2	34	1.07
59323--59366	16	2.8	15	82	6	52	63	0	0	36	0.95
59308--59366	23	2.5	24	86	2	84	61	0	1	37	1.07
61231--61272	15	2.7	15	86	13	59	52	2	0	45	1.13
63515--63589	38	2.0	37	84	5	98	48	4	1	46	1.29
69551--69613	32	2.0	32	87	6	92	42	17	1	38	1.59
70664--70724	22	2.8	22	95	2	106	68	6	0	24	1.13
73230--73324	2	47.5	2	100	0	190	50	0	0	49	1.00
79790--79824	18	1.9	18	88	0	52	28	17	0	54	1.43
82288--82370	29	2.8	29	90	1	130	42	10	14	32	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87040--87122	29	2.8	29	90	1	130	42	9	14	33	1.78
88251--88282	16	2.0	16	100	0	64	37	12	18	31	1.88
106841--107108	6	45.2	6	93	3	312	58	0	41	0	0.98
107164--107406	114	2.1	115	96	0	443	34	6	27	30	1.83
107275--107299	3	8.3	3	100	0	50	64	0	36	0	0.94
107485--107841	6	60.8	6	83	10	355	48	0	49	2	1.17
107623--107871	6	42.0	6	84	7	116	54	0	42	2	1.15
107919--107957	12	3.2	12	88	0	60	71	0	23	5	1.05
107984--108147	85	1.9	85	87	2	240	38	3	17	40	1.67
108149--108581	6	72.5	6	76	10	298	48	0	48	2	1.16
108140--108571	9	46.6	9	72	7	197	48	0	49	2	1.16
108480--108574	3	31.7	3	80	0	82	44	0	53	2	1.12
112356--112451	31	3.1	31	75	3	102	20	12	30	36	1.90
112359--112450	32	2.9	30	75	9	85	21	13	30	34	1.91
113227--113282	16	3.5	16	77	0	58	7	14	30	48	1.70
113263--113307	22	2.0	22	91	0	72	8	13	33	44	1.75
116857--116883	2	13.5	2	100	0	54	48	0	0	51	1.00
126839--126891	17	3.1	17	81	10	54	35	11	13	39	1.80
127674--127829	64	2.5	63	84	8	201	31	16	20	31	1.95
136376--136481	45	2.4	45	87	6	153	31	16	20	31	1.95
143046--143108	24	2.7	23	76	16	67	41	1	9	47	1.45
143127--143510	75	5.0	75	81	11	420	44	2	6	47	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
143203--143378	87	2.0	86	95	1	316	44	2	6	47	1.41
143077--143452	162	2.4	157	87	7	546	44	2	6	47	1.40
143288--143510	37	6.0	37	84	8	258	42	1	7	47	1.42
143288--143500	112	1.9	112	86	7	306	43	1	7	47	1.42
143510--143567	4	14.0	4	82	7	71	22	5	0	72	1.04
143522--143573	26	2.0	26	88	0	77	19	7	0	73	1.07
144966--145004	16	2.3	18	83	16	57	15	10	2	71	1.23
147693--147725	16	2.1	16	100	0	66	33	12	18	36	1.88
149525--149710	92	2.0	92	83	6	234	46	11	8	33	1.69
157228--157434	29	7.2	29	88	3	285	50	15	4	29	1.65
157240--157431	28	6.7	29	89	3	282	50	16	4	29	1.64
157228--157431	57	3.6	58	90	2	297	50	15	4	29	1.64
161664--161866	56	3.6	57	89	2	282	48	14	5	30	1.68
161664--161866	29	7.1	29	85	3	268	48	14	5	30	1.68

Tables:   1

The End!