genome.fa.s1857.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001857.1 Hibiscus syriacus cultivar Beakdansim tig00003758_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59220

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2839--2876	19	2.0	19	89	0	58	21	31	26	21	1.98
10219--10340	31	3.9	31	75	10	115	31	18	19	30	1.96
11629--11695	2	34.0	2	96	3	127	50	0	0	49	1.00
14434--14523	32	2.8	32	78	8	103	32	16	18	32	1.94
14439--14555	63	1.9	61	82	7	146	29	16	21	33	1.95
17149--17191	18	2.4	18	84	0	50	6	34	0	58	1.25
20738--20789	24	2.2	24	93	6	88	7	11	23	57	1.59
20738--20800	24	2.6	24	85	7	74	9	9	20	60	1.56
21149--21213	16	4.1	16	89	0	103	9	10	21	58	1.59
21144--21217	10	7.6	10	70	22	59	10	9	20	59	1.58
21706--21773	24	2.9	22	74	22	66	29	2	1	66	1.15
21687--21774	42	2.1	42	85	4	115	31	2	1	64	1.13
21791--21898	39	2.8	39	85	13	159	35	18	0	46	1.50
28655--28701	12	4.0	11	83	10	58	36	2	0	61	1.08
29696--29762	33	2.0	33	97	0	125	34	0	20	44	1.52
30293--30383	2	45.5	2	100	0	182	49	0	0	50	1.00
31078--31107	13	2.3	13	100	0	60	23	20	20	36	1.95
36145--36252	29	3.9	28	70	21	93	80	5	12	1	0.96
36133--36247	33	3.5	33	76	11	105	80	5	12	1	0.94
36142--36258	17	7.1	16	67	24	66	81	5	11	1	0.93
36144--36258	27	4.2	28	76	18	116	80	5	12	1	0.94
37236--37395	33	4.8	33	86	5	225	35	15	20	30	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37235--37395	66	2.4	66	94	2	279	34	14	20	29	1.93
37241--37418	32	5.4	32	86	8	227	34	15	19	31	1.92
37526--37654	34	3.8	34	92	1	197	36	20	10	33	1.86
37747--38234	40	12.4	40	89	4	724	31	14	11	42	1.82
37746--38234	119	4.1	118	88	5	695	31	14	11	41	1.82
38001--38069	23	3.3	23	64	29	62	33	11	14	40	1.82
38299--38351	15	3.7	14	75	12	54	33	15	15	35	1.88
38300--38357	28	2.0	29	90	9	93	32	12	15	39	1.84
38328--38596	76	3.6	72	75	10	225	29	18	14	37	1.90
38871--39121	91	2.7	91	96	0	448	38	15	23	23	1.92
39184--39239	16	3.4	16	68	18	51	48	8	23	19	1.77
39191--39243	17	3.1	17	70	20	56	45	11	18	24	1.82
39043--39648	240	2.5	239	93	1	1034	34	17	21	26	1.95
39642--39946	43	6.8	43	81	12	332	29	12	26	31	1.93
39642--39953	86	3.5	87	86	5	367	29	12	26	30	1.93
39803--39907	54	1.9	55	90	5	169	31	13	24	30	1.93
39963--40272	89	3.5	90	92	3	486	23	20	22	33	1.97
40253--40314	20	3.0	21	72	13	65	20	30	24	24	1.99
40166--40422	131	2.0	131	89	4	403	24	23	22	29	1.99
41599--41670	36	2.0	36	97	0	135	45	0	19	34	1.51
46775--46817	12	3.7	12	90	3	70	27	39	0	32	1.57
48165--48198	9	3.9	9	84	7	52	35	0	2	61	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48164--48215	17	3.1	17	88	5	79	34	0	5	59	1.21
48164--48221	17	3.5	17	88	4	73	32	0	5	62	1.18
49076--49128	26	2.0	26	96	0	97	22	24	15	37	1.92
50443--50503	25	2.4	25	83	5	70	19	3	13	63	1.42
50464--50508	12	3.7	12	79	5	54	17	4	15	62	1.49
57685--57723	20	2.0	20	100	0	78	35	7	30	25	1.84

Tables:   1

The End!