genome.fa.s1858.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001858.1 Hibiscus syriacus cultivar Beakdansim tig00003760_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  92055

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6943--7045	52	2.0	52	96	0	188	47	16	18	17	1.83
8173--8213	15	2.8	15	75	17	50	31	4	0	63	1.15
8815--8898	6	13.2	6	76	15	62	71	2	5	20	1.18
8830--8890	14	4.6	14	73	19	58	68	3	6	21	1.27
8837--8896	19	3.2	18	73	13	66	68	3	6	21	1.28
8815--8898	39	2.2	38	95	4	159	71	2	5	20	1.18
15961--16009	22	2.2	23	85	10	66	65	6	8	20	1.41
15961--16020	22	2.7	22	82	12	61	63	6	6	23	1.43
18195--18270	38	2.0	38	100	0	152	42	15	10	31	1.81
23261--23749	228	2.1	227	95	1	863	45	7	8	38	1.63
23829--24292	181	2.6	182	89	2	666	42	13	16	27	1.86
24213--24259	20	2.4	19	82	10	67	53	10	17	19	1.72
24222--24264	20	2.3	19	88	11	63	51	11	16	20	1.75
26469--26512	21	2.1	21	91	0	70	40	11	31	15	1.83
26546--26611	33	2.0	33	90	0	105	28	0	48	22	1.51
28397--28445	19	2.6	19	93	0	80	30	2	10	57	1.43
28564--29513	198	4.9	198	90	6	1555	36	15	17	30	1.91
28801--29513	377	1.9	375	98	0	1372	35	15	17	30	1.91
30979--31040	6	10.3	6	78	0	61	38	8	33	19	1.81
30982--31036	24	2.3	24	93	0	92	36	9	34	20	1.84
30982--31040	12	4.9	12	87	0	82	37	8	33	20	1.83
32237--32270	16	2.1	16	88	0	50	47	8	20	23	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32632--32704	23	3.2	23	88	0	101	34	4	21	39	1.73
33086--33578	183	2.7	182	94	1	878	34	15	17	33	1.91
36046--36110	25	2.6	25	80	0	85	35	9	13	41	1.77
36458--36530	23	3.2	23	88	0	101	34	4	21	39	1.73
36804--36853	25	2.0	25	96	0	91	26	8	22	44	1.80
37240--37276	18	2.1	18	89	0	56	32	5	10	51	1.60
37543--37629	39	2.2	39	95	0	156	48	20	13	17	1.81
38050--38122	23	3.2	23	84	0	92	34	4	20	41	1.72
38050--38147	46	2.1	45	81	7	108	33	6	17	42	1.74
38480--38542	23	2.7	23	90	0	99	36	4	17	41	1.71
37848--39765	431	4.5	430	97	0	3559	41	7	11	39	1.71
38911--38983	23	3.2	23	92	0	119	34	5	21	38	1.77
39342--39414	23	3.2	23	94	0	128	35	5	20	38	1.76
37848--39765	861	2.2	861	97	0	3588	41	7	11	39	1.71
39832--39879	23	2.1	23	88	0	69	35	16	10	37	1.83
40858--40887	9	3.3	9	90	0	51	6	10	3	80	1.01
54263--54322	20	3.0	20	95	0	102	56	21	13	8	1.63
54309--54335	14	1.9	14	100	0	54	59	29	11	0	1.32
54263--54331	20	3.5	20	92	4	95	57	23	11	7	1.58
54262--54321	10	6.0	10	86	0	84	58	21	11	8	1.59
58045--58077	16	2.1	16	100	0	66	57	24	12	6	1.57
58143--58217	10	7.7	10	69	21	61	57	21	12	9	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58147--58211	16	4.1	16	95	0	121	56	23	12	7	1.61
58962--59017	14	4.3	14	76	17	66	53	23	12	10	1.69
58955--59016	24	2.6	24	89	0	97	54	22	11	11	1.67
74709--74743	18	2.0	17	88	5	52	34	8	31	25	1.86
75067--75093	4	6.8	4	100	0	54	0	0	22	77	0.76
77324--77376	22	2.4	22	81	15	56	33	3	3	58	1.34
77410--77442	11	3.1	11	82	8	50	24	0	6	69	1.10
78055--78092	19	2.1	17	90	9	58	10	10	0	78	0.95
83908--83957	2	25.0	2	100	0	100	50	0	0	50	1.00
85266--85307	19	2.2	19	83	8	50	30	2	4	61	1.29

Tables:   1

The End!