Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001859.1 Hibiscus syriacus cultivar Beakdansim tig00003762_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  126625

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
184--208
9
2.8
9
100
0
50
32
0
0
68
0.90
2239--2263
12
2.1
12
100
0
50
56
0
0
44
0.99
7817--7857
18
2.3
18
95
0
73
65
0
0
34
0.93
16892--16969
31
2.5
32
93
4
126
33
30
1
34
1.66
19131--19225
3
31.7
3
91
0
154
31
2
1
65
1.11
19623--19683
22
2.7
22
74
2
68
70
4
24
0
1.07
20544--20585
20
2.0
22
86
9
61
38
2
2
57
1.25
20760--20838
17
4.8
16
68
20
63
51
0
3
44
1.19
23874--23923
20
2.4
21
83
10
66
56
20
4
20
1.58
28815--28863
17
2.9
17
76
11
55
55
0
2
42
1.11
28854--28888
16
2.1
17
89
5
54
31
0
0
68
0.90
30490--30530
3
14.0
3
85
14
59
31
0
0
68
0.90
32605--32673
30
2.3
29
75
9
68
27
5
1
65
1.24
33196--33233
17
2.3
17
86
4
51
36
2
2
57
1.26
35922--35953
15
2.1
15
94
0
55
25
18
9
46
1.79
43281--43332
1
52.0
1
76
0
50
88
0
11
0
0.52
43261--43332
20
3.7
20
89
7
96
84
0
15
0
0.62
43263--43332
29
2.4
29
92
0
113
85
0
14
0
0.59
43263--43332
9
7.3
9
81
12
86
85
0
14
0
0.59
44174--44415
93
2.6
92
93
2
403
28
14
21
35
1.93
45098--45136
20
1.9
20
84
5
51
48
10
7
33
1.66
50258--50292
18
2.0
18
88
5
54
60
2
0
37
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50291--50360
29
2.3
32
83
11
85
52
2
1
42
1.24
62129--62205
5
15.8
5
94
5
140
59
0
0
40
0.97
62294--62333
19
2.2
18
86
8
55
35
2
0
62
1.09
63436--63473
18
2.3
16
86
13
51
52
0
0
47
1.00
64047--64132
31
2.9
29
75
3
82
54
1
6
37
1.35
74296--74340
23
2.0
23
86
0
63
26
26
26
20
1.99
74308--74623
150
2.1
149
95
1
571
34
21
18
26
1.96
75078--75234
64
2.4
63
80
10
158
28
18
20
33
1.96
81349--81393
23
2.0
23
86
0
63
26
26
26
20
1.99
81981--82137
64
2.4
63
80
10
158
28
18
20
33
1.96
83816--83868
23
2.3
23
90
0
88
26
26
26
20
1.99
83979--84014
18
2.0
18
100
0
72
33
33
22
11
1.89
83875--84115
121
2.0
121
95
0
437
36
24
14
24
1.93
83905--84100
62
3.2
63
66
23
164
37
23
14
25
1.92
85297--85341
21
2.1
21
87
0
63
15
24
28
31
1.96
94236--94300
21
3.4
21
72
24
61
50
0
0
49
1.00
94236--94319
36
2.3
35
84
10
105
53
0
2
44
1.13
95440--95499
23
2.6
23
83
0
84
13
35
28
23
1.92
103582--103620
21
1.9
21
89
5
62
23
12
30
33
1.92
110239--110362
62
2.0
62
98
0
239
35
16
11
36
1.85
111546--111623
27
3.1
25
80
8
95
38
15
12
33
1.85
115169--115352
2
97.5
2
69
22
96
41
1
4
52
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
115171--115351
21
8.2
21
74
15
118
41
1
4
51
1.31
115169--115387
12
18.2
12
74
15
116
40
1
4
53
1.32
122167--122203
19
2.0
19
89
5
58
59
0
0
40
0.97

Tables:   1

The End!