Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001860.1 Hibiscus syriacus cultivar Beakdansim tig00003763_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 87029
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Found at i:5656 original size:17 final size:17
Alignment explanation
Indices: 5630--5665 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
5620 TTAGGTGCGA
*
5630 GTGTTGGACAAAGATAT
1 GTGTTCGACAAAGATAT
*
5647 GTGTTCGACACAGATAT
1 GTGTTCGACAAAGATAT
5664 GT
1 GT
5666 TCTTTTTTTT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
17 17 1.00
ACGTcount: A:0.31, C:0.11, G:0.28, T:0.31
Consensus pattern (17 bp):
GTGTTCGACAAAGATAT
Found at i:9039 original size:18 final size:19
Alignment explanation
Indices: 9016--9057 Score: 59
Period size: 20 Copynumber: 2.2 Consensus size: 19
9006 ATAATATAGA
*
9016 AAAATTCTC-CTTTTCACC
1 AAAATTCACACTTTTCACC
9034 AAAATTCACATCTTTTCACC
1 AAAATTCACA-CTTTTCACC
9054 AAAA
1 AAAA
9058 ATAACATGGT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 8 0.38
20 13 0.62
ACGTcount: A:0.38, C:0.29, G:0.00, T:0.33
Consensus pattern (19 bp):
AAAATTCACACTTTTCACC
Found at i:9064 original size:20 final size:20
Alignment explanation
Indices: 9025--9064 Score: 62
Period size: 20 Copynumber: 2.0 Consensus size: 20
9015 AAAAATTCTC
* *
9025 CTTTTCACCAAAATTCACAT
1 CTTTTCACCAAAAATAACAT
9045 CTTTTCACCAAAAATAACAT
1 CTTTTCACCAAAAATAACAT
9065 GGTATCATAG
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
20 18 1.00
ACGTcount: A:0.40, C:0.28, G:0.00, T:0.33
Consensus pattern (20 bp):
CTTTTCACCAAAAATAACAT
Found at i:10447 original size:18 final size:19
Alignment explanation
Indices: 10424--10466 Score: 61
Period size: 20 Copynumber: 2.3 Consensus size: 19
10414 AATAATATAA
*
10424 CAAAATTCTC-CTTTTCAC
1 CAAAATTCACACTTTTCAC
10442 CAAAATTCACATCTTTTCAC
1 CAAAATTCACA-CTTTTCAC
10462 CAAAA
1 CAAAA
10467 ATAACAACAC
Statistics
Matches: 22, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
18 9 0.41
20 13 0.59
ACGTcount: A:0.37, C:0.30, G:0.00, T:0.33
Consensus pattern (19 bp):
CAAAATTCACACTTTTCAC
Found at i:11867 original size:13 final size:14
Alignment explanation
Indices: 11843--11873 Score: 55
Period size: 13 Copynumber: 2.3 Consensus size: 14
11833 AAACATTTCA
11843 CAAATCAGAAAAGT
1 CAAATCAGAAAAGT
11857 CAAAT-AGAAAAGT
1 CAAATCAGAAAAGT
11870 CAAA
1 CAAA
11874 GAAGCCAATA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.71
14 5 0.29
ACGTcount: A:0.61, C:0.13, G:0.13, T:0.13
Consensus pattern (14 bp):
CAAATCAGAAAAGT
Found at i:14180 original size:2 final size:2
Alignment explanation
Indices: 14173--14234 Score: 94
Period size: 2 Copynumber: 32.5 Consensus size: 2
14163 CTTCATTCAA
14173 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
*
14215 AT AT GT AT -T AT -T A- AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT A
14235 CATGCTTACT
Statistics
Matches: 55, Mismatches: 2, Indels: 6
0.87 0.03 0.10
Matches are distributed among these distances:
1 3 0.05
2 52 0.95
ACGTcount: A:0.48, C:0.00, G:0.02, T:0.50
Consensus pattern (2 bp):
AT
Found at i:21021 original size:32 final size:33
Alignment explanation
Indices: 20985--21075 Score: 105
Period size: 32 Copynumber: 2.8 Consensus size: 33
20975 TATTAGGTCG
*
20985 GGTCAATGTCAAATCAATCAATTTTCAGATT-A
1 GGTCAATATCAAATCAATCAATTTTCAGATTCA
* * * *
21017 GGTCAATATTAAATCATTCAATTTTC-GGTTCG
1 GGTCAATATCAAATCAATCAATTTTCAGATTCA
* *
21049 GGTAAATATCATATCAATCAATTTTCA
1 GGTCAATATCAAATCAATCAATTTTCA
21076 TGTTAGTCCA
Statistics
Matches: 48, Mismatches: 9, Indels: 3
0.80 0.15 0.05
Matches are distributed among these distances:
31 3 0.06
32 45 0.94
ACGTcount: A:0.35, C:0.15, G:0.12, T:0.37
Consensus pattern (33 bp):
GGTCAATATCAAATCAATCAATTTTCAGATTCA
Found at i:28151 original size:2 final size:2
Alignment explanation
Indices: 28144--28170 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
28134 CTCTAACCAT
28144 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
28171 CTTTTTACAT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:36968 original size:2 final size:2
Alignment explanation
Indices: 36961--36985 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
36951 CTAATATGTT
36961 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
36986 TATCACTACA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:37307 original size:2 final size:2
Alignment explanation
Indices: 37300--37324 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
37290 ATTGTAACTT
37300 TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA T
37325 TTAGAAGATT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:38084 original size:6 final size:6
Alignment explanation
Indices: 38075--38105 Score: 62
Period size: 6 Copynumber: 5.2 Consensus size: 6
38065 GTTAAATTTA
38075 ATTTCC ATTTCC ATTTCC ATTTCC ATTTCC A
1 ATTTCC ATTTCC ATTTCC ATTTCC ATTTCC A
38106 GTAAAAACTT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 25 1.00
ACGTcount: A:0.19, C:0.32, G:0.00, T:0.48
Consensus pattern (6 bp):
ATTTCC
Found at i:39944 original size:19 final size:19
Alignment explanation
Indices: 39881--39944 Score: 76
Period size: 19 Copynumber: 3.3 Consensus size: 19
39871 TATTTATTAT
*
39881 AGTGATTTCATTGGTCGTCA
1 AGTG-TTTCATAGGTCGTCA
*
39901 AGTG-CTCTATAGGTCGTCA
1 AGTGTTTC-ATAGGTCGTCA
*
39920 AGTGTTTCATAGATCGTCA
1 AGTGTTTCATAGGTCGTCA
39939 AGTGTT
1 AGTGTT
39945 CCTTGAAACA
Statistics
Matches: 38, Mismatches: 4, Indels: 5
0.81 0.09 0.11
Matches are distributed among these distances:
18 2 0.05
19 30 0.79
20 6 0.16
ACGTcount: A:0.22, C:0.16, G:0.25, T:0.38
Consensus pattern (19 bp):
AGTGTTTCATAGGTCGTCA
Found at i:40027 original size:19 final size:19
Alignment explanation
Indices: 40003--40040 Score: 60
Period size: 19 Copynumber: 2.0 Consensus size: 19
39993 ACTGTTGCAG
40003 CTCCATA-AGTTGCCATATA
1 CTCCATAGA-TTGCCATATA
40022 CTCCATAGATTGCCATATA
1 CTCCATAGATTGCCATATA
40041 TTCTTGGAGA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
19 17 0.94
20 1 0.06
ACGTcount: A:0.32, C:0.26, G:0.11, T:0.32
Consensus pattern (19 bp):
CTCCATAGATTGCCATATA
Found at i:42777 original size:237 final size:237
Alignment explanation
Indices: 42362--42835 Score: 903
Period size: 237 Copynumber: 2.0 Consensus size: 237
42352 CTATCACTCT
42362 CAACAATCAATCGTTCCTTAGAGCACCATTTAGAAGTAGCGAAGAAACATAAACCATGTTTAATG
1 CAACAATCAATCGTTCCTTAGAGCACCATTTAGAAGTAGCGAAGAAACATAAACCATGTTTAATG
** *
42427 GCCTTTAATTCCATCAAAGAAGGAGGACCTGGACCAGAAGCTTCTTGAAATGATCCTAGCATTGT
66 GCCTTTAATTCCAAAAAAGAAGGAGGACCTGGACCAGAAGCTTCTTGAAATGATCCTAGCACTGT
*
42492 GTCAGACTCATCTCTTAAAACTCCACCTAAACCACTAGCCTTCCAATCACTTTTGACAGCAACAT
131 GTCAGACTCATCTCTTAAAACTCAACCTAAACCACTAGCCTTCCAATCACTTTTGACAGCAACAT
42557 CCACGTTCAACTTTAGAAATCCCACAGGGGGAGGGGACCAAG
196 CCACGTTCAACTTTAGAAATCCCACAGGGGGAGGGGACCAAG
*
42599 CAACAATCAATCGTTCCTTAGAGCACCATTTAGAAGTATCGAAGAAACATAAACCATGTTTAATG
1 CAACAATCAATCGTTCCTTAGAGCACCATTTAGAAGTAGCGAAGAAACATAAACCATGTTTAATG
42664 GCCTTTAATTCCAAAAAAGAAGGAGGACCTGGACCAGAAGCTTCTTGAAATGATCCTAGCACTGT
66 GCCTTTAATTCCAAAAAAGAAGGAGGACCTGGACCAGAAGCTTCTTGAAATGATCCTAGCACTGT
42729 GTCAGACTCATCTCTTAAAACTCAACCTAAACCACTAGCCTTCCAATCACTTTTGACAGCAACAT
131 GTCAGACTCATCTCTTAAAACTCAACCTAAACCACTAGCCTTCCAATCACTTTTGACAGCAACAT
42794 CCACGTTCAACTTTAGAAATCCCACAGGGGGAGGGGACCAAG
196 CCACGTTCAACTTTAGAAATCCCACAGGGGGAGGGGACCAAG
42836 AAATCTGATT
Statistics
Matches: 232, Mismatches: 5, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
237 232 1.00
ACGTcount: A:0.34, C:0.25, G:0.17, T:0.23
Consensus pattern (237 bp):
CAACAATCAATCGTTCCTTAGAGCACCATTTAGAAGTAGCGAAGAAACATAAACCATGTTTAATG
GCCTTTAATTCCAAAAAAGAAGGAGGACCTGGACCAGAAGCTTCTTGAAATGATCCTAGCACTGT
GTCAGACTCATCTCTTAAAACTCAACCTAAACCACTAGCCTTCCAATCACTTTTGACAGCAACAT
CCACGTTCAACTTTAGAAATCCCACAGGGGGAGGGGACCAAG
Found at i:51219 original size:135 final size:135
Alignment explanation
Indices: 50892--51587 Score: 821
Period size: 135 Copynumber: 5.1 Consensus size: 135
50882 CCAAAACAAA
* * * * * * *
50892 ACAAAAATGATAAATTAGATACTAAACGTGTAGTTTATAGGGATGTTCATTTTTCGGTTTTAGAT
1 ACAAAAGTGAT-AATTAGGTACTAAAAGTGTAGTTTATAGGGGTGTTCATTGTTCGGTTTTAAAC
* * *
50957 GTATAGTTTAGTACCCAATTATCACTTTTGTTTCGTTTTA-GTCATCTAACTTTTTTTTTTTGTC
65 GTGTAGTTTAGTACCCAATTATCACTTTTGTTTCG-TTTAGGTCATCCAAC---TATTTTTT-TC
51021 AAAATCATAGC
125 AAAATCATAGC
* * *
51032 ACAAAAGTGATAATT-GAGTATTAAATGTGTAGTTTAAAGGGGTGTTCATTGTTCGGTTTTAAAC
1 ACAAAAGTGATAATTAG-GTACTAAAAGTGTAGTTTATAGGGGTGTTCATTGTTCGGTTTTAAAC
* * *
51096 GCGTAGTTTAGTACCGAATTATCACTTTTATTTCGTTTAGGTCATCCAACTATTTTTTTCAAAAT
65 GTGTAGTTTAGTACCCAATTATCACTTTTGTTTCGTTTAGGTCATCCAACTATTTTTTTCAAAAT
51161 CATAGC
130 CATAGC
* * * *
51167 ACAAAAGTGATAATTAGGTATTAAAAGTGTAGTTTATAGGGGTATACATTGTTCAGTTTTAAACG
1 ACAAAAGTGATAATTAGGTACTAAAAGTGTAGTTTATAGGGGTGTTCATTGTTCGGTTTTAAACG
* *
51232 TGTAGTTTAGTACCCAATTATCACTTTTGTTTCATTTTGGTCATCCAACTATTTTTTTGTCAAAA
66 TGTAGTTTAGTACCCAATTATCACTTTTGTTTCGTTTAGGTCATCCAACTA-TTTTTT-TCAAAA
51297 TCATAGC
129 TCATAGC
* * * * *
51304 ACAAAAGCGATAATTGGGTACTAAATGTGTAGTTTAAAGGGGTGTTCATTGTTCAGTTTTAAACG
1 ACAAAAGTGATAATTAGGTACTAAAAGTGTAGTTTATAGGGGTGTTCATTGTTCGGTTTTAAACG
* * * * * * * *
51369 TGTAGTTTAGTATCGAATTATCACTTTTATTTTGTTTTTGGTCATCTAAATA-TTTTGTCAAAAT
66 TGTAGTTTAGTACCCAATTATCACTTTTGTTTCG-TTTAGGTCATCCAACTATTTTTTTCAAAAT
51433 CATAGC
130 CATAGC
* * * *
51439 ATAAAAGTGATAATTTAGGTACTAAACA-TGTAGTTTATAGGGATATACATTGTTCGGTTTTAAA
1 ACAAAAGTGATAA-TTAGGTACTAAA-AGTGTAGTTTATAGGGGTGTTCATTGTTCGGTTTTAAA
* * * *
51503 CGTGTAGTTTAGTACCCAATTATCATTTTTGTTTCGGTTT-GGACACCCACCTA-TTTTTTC-AA
64 CGTGTAGTTTAGTACCCAATTATCACTTTTGTTTC-GTTTAGGTCATCCAACTATTTTTTTCAAA
51565 ATCATAGC
128 ATCATAGC
* *
51573 AGAAAAGTAATAATT
1 ACAAAAGTGATAATT
51588 GAGTAGCTTA
Statistics
Matches: 485, Mismatches: 62, Indels: 25
0.85 0.11 0.04
Matches are distributed among these distances:
133 2 0.00
134 21 0.04
135 155 0.32
136 93 0.19
137 101 0.21
138 20 0.04
139 83 0.17
140 10 0.02
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.41
Consensus pattern (135 bp):
ACAAAAGTGATAATTAGGTACTAAAAGTGTAGTTTATAGGGGTGTTCATTGTTCGGTTTTAAACG
TGTAGTTTAGTACCCAATTATCACTTTTGTTTCGTTTAGGTCATCCAACTATTTTTTTCAAAATC
ATAGC
Found at i:51535 original size:273 final size:269
Alignment explanation
Indices: 50892--51660 Score: 999
Period size: 272 Copynumber: 2.9 Consensus size: 269
50882 CCAAAACAAA
* * * * * * * *
50892 ACAAAAATGATAAATTAGATACTAAACGTGTAGTTTATAGGGATGTTCATTTTTCGGTTTTAGAT
1 ACAAAAGTGAT-AATTAGGTACTAAACATGTAGTTTATAGGGATATACATTGTTCGGTTTTAAAC
* * * *
50957 GTATAGTTTAGTACCCAATTATCACTTTTGTTTCGTTTTAGTCATCTAACTTTTTTTTTTTGTCA
65 GTGTAGTTTAGTACCCAATTATCACTTTTGTTTCGTTTTGGTCATCCAAC--TATTTTTTTGTCA
*
51022 AAATCATAGCACAAAAGTGATAATTGAGTATTAAATGTGTAGTTTAAAGGGGTGTTCATTGTTCG
128 AAATCATAGCACAAAAG-GATAATTG-GTA-TAAATGTGTAGTTTAAAGGGGTGTTCATTGTTCA
* * *
51087 GTTTTAAACGCGTAGTTTAGTACCGAATTATCACTTTTATTTCGTTTAGGTCATCCAACTATTTT
190 GTTTTAAACGTGTAGTTTAGTATCGAATTATCACTTTTATTTCGTTTAGGTCATCCAAATATTTT
*
51152 TTTCAAAATCATAGC
255 TGTCAAAATCATAGC
* * *
51167 ACAAAAGTGATAATTAGGTATTAAA-AGTGTAGTTTATAGGGGTATACATTGTTCAGTTTTAAAC
1 ACAAAAGTGATAATTAGGTACTAAACA-TGTAGTTTATAGGGATATACATTGTTCGGTTTTAAAC
*
51231 GTGTAGTTTAGTACCCAATTATCACTTTTGTTTCATTTTGGTCATCCAACTATTTTTTTGTCAAA
65 GTGTAGTTTAGTACCCAATTATCACTTTTGTTTCGTTTTGGTCATCCAACTATTTTTTTGTCAAA
51296 ATCATAGCACAAAAGCGATAATTGGGTACTAAATGTGTAGTTTAAAGGGGTGTTCATTGTTCAGT
130 ATCATAGCACAAAAG-GATAATT-GGTA-TAAATGTGTAGTTTAAAGGGGTGTTCATTGTTCAGT
* * *
51361 TTTAAACGTGTAGTTTAGTATCGAATTATCACTTTTATTTTGTTTTTGGTCATCTAAATA-TTTT
192 TTTAAACGTGTAGTTTAGTATCGAATTATCACTTTTATTTCG-TTTAGGTCATCCAAATATTTTT
51425 GTCAAAATCATAGC
256 GTCAAAATCATAGC
*
51439 ATAAAAGTGATAATTTAGGTACTAAACATGTAGTTTATAGGGATATACATTGTTCGGTTTTAAAC
1 ACAAAAGTGATAA-TTAGGTACTAAACATGTAGTTTATAGGGATATACATTGTTCGGTTTTAAAC
* * * * *
51504 GTGTAGTTTAGTACCCAATTATCATTTTTGTTTCGGTTTGGACACCCACCTA--TTTTT-TC-AA
65 GTGTAGTTTAGTACCCAATTATCACTTTTGTTTCGTTTTGGTCATCCAACTATTTTTTTGTCAAA
* * * * * *
51565 ATCATAGCAGAAAA-G-T-A-----ATAATTGAGTAGCTTAAGGGGGTGTTCATTGTTCCGTTTT
130 ATCATAGCACAAAAGGATAATTGGTATAAATGTGTAGTTTAAAGGGGTGTTCATTGTTCAGTTTT
*
51622 AAACATGTAGTTTAGTATCGAATTATCACTTTTATTTCG
195 AAACGTGTAGTTTAGTATCGAATTATCACTTTTATTTCG
51661 ACTGAACATT
Statistics
Matches: 445, Mismatches: 44, Indels: 27
0.86 0.09 0.05
Matches are distributed among these distances:
258 71 0.16
259 1 0.00
265 1 0.00
266 1 0.00
267 1 0.00
269 15 0.03
270 2 0.00
271 5 0.01
272 142 0.32
273 107 0.24
274 89 0.20
275 10 0.02
ACGTcount: A:0.30, C:0.12, G:0.17, T:0.41
Consensus pattern (269 bp):
ACAAAAGTGATAATTAGGTACTAAACATGTAGTTTATAGGGATATACATTGTTCGGTTTTAAACG
TGTAGTTTAGTACCCAATTATCACTTTTGTTTCGTTTTGGTCATCCAACTATTTTTTTGTCAAAA
TCATAGCACAAAAGGATAATTGGTATAAATGTGTAGTTTAAAGGGGTGTTCATTGTTCAGTTTTA
AACGTGTAGTTTAGTATCGAATTATCACTTTTATTTCGTTTAGGTCATCCAAATATTTTTGTCAA
AATCATAGC
Found at i:59158 original size:2 final size:2
Alignment explanation
Indices: 59151--59177 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
59141 TCATAAAATT
59151 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
59178 TTACAAAATT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:62714 original size:31 final size:32
Alignment explanation
Indices: 62654--62715 Score: 81
Period size: 31 Copynumber: 2.0 Consensus size: 32
62644 ATTTAGACAA
* * *
62654 AAAAATAAAATATTTTAAGCATTTGTTTTGAT
1 AAAAATAAAATACTTTAAACATTTATTTTGAT
*
62686 AAAAA-AAAATACTTTAAATATTTATTTTGA
1 AAAAATAAAATACTTTAAACATTTATTTTGA
62716 CCAAAACGGT
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
31 21 0.81
32 5 0.19
ACGTcount: A:0.48, C:0.03, G:0.06, T:0.42
Consensus pattern (32 bp):
AAAAATAAAATACTTTAAACATTTATTTTGAT
Found at i:80317 original size:20 final size:21
Alignment explanation
Indices: 80292--80331 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
80282 CTCCGTGCTA
*
80292 AGGCTAAGGTAA-GCTAAACT
1 AGGCTAAGATAAGGCTAAACT
80312 AGGCTAAGATAAGGCTAAAC
1 AGGCTAAGATAAGGCTAAAC
80332 ACACTGGTCA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.42, C:0.15, G:0.25, T:0.17
Consensus pattern (21 bp):
AGGCTAAGATAAGGCTAAACT
Done.