genome.fa.s1861.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001861.1 Hibiscus syriacus cultivar Beakdansim tig00003764_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  120286

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2950--3042	28	3.3	27	76	5	87	35	11	17	35	1.86
22418--22458	21	2.0	21	85	0	55	31	29	21	17	1.96
22487--22531	22	2.0	22	86	4	63	31	33	26	8	1.87
23543--23760	103	2.1	103	95	0	391	26	13	23	36	1.92
23776--23836	23	2.7	23	79	5	70	21	24	26	27	1.99
28953--28989	16	2.3	16	95	0	65	32	18	8	40	1.80
35084--35133	26	1.9	26	88	8	75	30	12	10	48	1.73
40698--40727	3	9.7	3	92	7	51	66	0	0	33	0.92
44512--44552	16	2.5	15	85	14	55	29	7	12	51	1.66
45447--45539	21	4.5	21	78	4	100	39	18	24	17	1.91
45528--45662	20	6.7	20	76	7	94	33	23	17	25	1.96
45447--45539	41	2.3	41	100	0	186	39	18	24	17	1.91
45527--45662	41	3.3	41	76	6	141	33	23	16	25	1.96
47472--47516	18	2.5	18	88	0	72	26	44	15	13	1.83
47998--48064	20	3.4	20	81	2	73	38	23	22	14	1.92
48053--48110	14	3.9	14	79	16	71	48	24	17	10	1.78
48037--48127	32	2.8	33	94	3	166	47	21	18	12	1.81
48144--48201	14	3.9	14	79	16	71	8	15	25	50	1.73
48139--48326	32	5.4	33	80	17	211	12	19	22	45	1.84
48253--48310	14	3.9	14	79	16	71	10	17	24	48	1.78
48139--48347	109	1.9	109	96	0	382	13	20	22	43	1.87
48311--48366	20	2.8	19	86	7	76	17	25	21	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50234--50269	14	2.6	14	90	0	54	30	0	22	47	1.52
50386--50472	19	4.8	19	87	10	130	48	16	21	13	1.80
50357--50472	33	3.4	33	81	11	142	44	18	22	13	1.85
50491--50568	20	3.9	20	94	0	138	15	24	24	35	1.94
51625--51678	24	2.2	24	90	0	81	24	16	20	38	1.92
51853--51877	12	2.1	12	100	0	50	72	0	28	0	0.86
54169--54295	33	3.8	33	83	4	175	43	18	22	16	1.88
54173--54302	66	2.0	66	96	0	242	43	17	21	17	1.88
54295--54384	33	2.7	33	87	0	126	13	20	20	46	1.83
54491--54527	14	2.6	14	91	0	65	45	24	0	29	1.53
55882--55948	21	3.2	21	68	4	55	19	19	35	25	1.95
55882--56004	42	2.9	41	79	7	113	22	17	36	22	1.95
57999--58130	19	7.1	19	75	11	112	45	19	22	12	1.83
58126--58170	19	2.4	19	88	0	72	6	15	24	53	1.66
58722--58855	20	6.7	20	86	5	153	24	18	25	31	1.98
58926--58966	21	2.0	21	85	0	55	34	31	17	17	1.93
68158--68182	2	12.5	2	100	0	50	48	0	0	52	1.00
68225--68266	22	2.0	21	85	4	57	66	4	0	28	1.12
74989--75072	31	2.5	34	75	15	93	50	0	10	39	1.37
75013--75079	31	2.1	32	91	2	109	49	0	13	37	1.42
80321--80353	17	1.9	17	93	0	57	39	9	6	45	1.61
81327--81364	18	2.3	16	86	13	51	42	36	5	15	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88610--88984	178	2.1	182	86	5	521	40	12	11	36	1.79
96470--96517	3	16.0	3	100	0	96	33	0	0	66	0.92
98677--98730	18	3.0	18	94	0	90	29	33	18	18	1.95
100107--100151	22	2.0	22	95	0	81	26	24	22	26	2.00
100112--100158	22	2.1	22	92	0	76	27	27	21	23	1.99
101906--101938	15	2.1	16	88	5	50	39	3	0	57	1.14
102653--102686	2	17.0	2	100	0	68	50	0	0	50	1.00
103158--103220	29	2.2	29	82	0	72	38	7	1	52	1.40
103315--103370	24	2.3	23	88	8	85	60	0	7	32	1.24
106856--106895	15	2.6	16	77	22	50	60	7	0	32	1.25

Tables:   1

The End!