Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001862.1 Hibiscus syriacus cultivar Beakdansim tig00003766_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 67457
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.34
Found at i:6152 original size:110 final size:111
Alignment explanation
Indices: 5955--6180 Score: 386
Period size: 110 Copynumber: 2.0 Consensus size: 111
5945 TCAGTCTATT
*
5955 AATGCTTCGAAAGCACATACTAATTCGAAATTATCAAGCTTTTTAGCATCTCAAAATTAAATGAA
1 AATGCTTCGAAAGCACATACTAATTCGAAATTATCAAACTTTTTAGCATCTCAAAATTAAATGAA
*
6020 CATTCAACCTATAGAAATTTCAAATATT-CCAGGATAATTTGACAA
66 CATTCAACCTATAGAAAATTCAAATATTCCCAGGATAATTTGACAA
*
6065 AATGCTTCGAAAGCAACAT-GTAATTCGAAATTATCAAACTTTTTTAGCATCTCAAAATTAAATG
1 AATGCTTCGAAAGC-ACATACTAATTCGAAATTATCAAAC-TTTTTAGCATCTCAAAATTAAATG
6129 AAC-TTCAACCTATAGAAAATTCAAATATTCCCAGGATAATTTGACAA
64 AACATTCAACCTATAGAAAATTCAAATATTCCCAGGATAATTTGACAA
6176 AATGC
1 AATGC
6181 ATATAGAAAC
Statistics
Matches: 110, Mismatches: 3, Indels: 5
0.93 0.03 0.04
Matches are distributed among these distances:
110 57 0.52
111 53 0.48
ACGTcount: A:0.42, C:0.17, G:0.10, T:0.31
Consensus pattern (111 bp):
AATGCTTCGAAAGCACATACTAATTCGAAATTATCAAACTTTTTAGCATCTCAAAATTAAATGAA
CATTCAACCTATAGAAAATTCAAATATTCCCAGGATAATTTGACAA
Found at i:6909 original size:16 final size:15
Alignment explanation
Indices: 6888--6921 Score: 50
Period size: 16 Copynumber: 2.2 Consensus size: 15
6878 TGATTTAATT
6888 TAATTATAATGAAAAA
1 TAATTATAAT-AAAAA
*
6904 TAATTATTATAAAAA
1 TAATTATAATAAAAA
6919 TAA
1 TAA
6922 ATACATGACA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 8 0.47
16 9 0.53
ACGTcount: A:0.62, C:0.00, G:0.03, T:0.35
Consensus pattern (15 bp):
TAATTATAATAAAAA
Found at i:10936 original size:24 final size:23
Alignment explanation
Indices: 10909--10954 Score: 56
Period size: 24 Copynumber: 2.0 Consensus size: 23
10899 AAAGGATTAA
*
10909 TTTAACTGTTAATGAAATGTTGAG
1 TTTAACTGTTAA-AAAATGTTGAG
* *
10933 TTTAATTTTTAAAAAATGTTGA
1 TTTAACTGTTAAAAAATGTTGA
10955 ATGGTGATTA
Statistics
Matches: 19, Mismatches: 3, Indels: 1
0.83 0.13 0.04
Matches are distributed among these distances:
23 9 0.47
24 10 0.53
ACGTcount: A:0.37, C:0.02, G:0.15, T:0.46
Consensus pattern (23 bp):
TTTAACTGTTAAAAAATGTTGAG
Found at i:11296 original size:39 final size:39
Alignment explanation
Indices: 11252--11328 Score: 118
Period size: 39 Copynumber: 2.0 Consensus size: 39
11242 AATCCGTAGT
* *
11252 AGTATTAAAGCTAGTGAGGGAACAAGTGAGTGCAACTAA
1 AGTATTAAAGCTAATGAGGCAACAAGTGAGTGCAACTAA
* *
11291 AGTATTACAGCTAATGAGGCAACATGTGAGTGCAACTA
1 AGTATTAAAGCTAATGAGGCAACAAGTGAGTGCAACTA
11329 GTTTTTTTAT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
39 34 1.00
ACGTcount: A:0.39, C:0.13, G:0.26, T:0.22
Consensus pattern (39 bp):
AGTATTAAAGCTAATGAGGCAACAAGTGAGTGCAACTAA
Found at i:15840 original size:21 final size:21
Alignment explanation
Indices: 15815--15858 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
15805 TATTTAGGGG
* * *
15815 TAAATTTATGTAATTATTTTA
1 TAAATATATATAATTATATTA
15836 TAAATATATATAATTATATTA
1 TAAATATATATAATTATATTA
15857 TA
1 TA
15859 TTTAATTTAA
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (21 bp):
TAAATATATATAATTATATTA
Found at i:17826 original size:15 final size:16
Alignment explanation
Indices: 17797--17826 Score: 53
Period size: 16 Copynumber: 1.9 Consensus size: 16
17787 ATATATTTGA
17797 ATTTTAAATTAAAATT
1 ATTTTAAATTAAAATT
17813 ATTTTAAA-TAAAAT
1 ATTTTAAATTAAAAT
17827 CTATATATGA
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 6 0.43
16 8 0.57
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (16 bp):
ATTTTAAATTAAAATT
Found at i:18679 original size:3 final size:3
Alignment explanation
Indices: 18673--18703 Score: 62
Period size: 3 Copynumber: 10.3 Consensus size: 3
18663 ATCATAATAA
18673 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT T
18704 TGTTAATTAT
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 28 1.00
ACGTcount: A:0.32, C:0.00, G:0.00, T:0.68
Consensus pattern (3 bp):
TAT
Found at i:19462 original size:2 final size:2
Alignment explanation
Indices: 19455--19487 Score: 59
Period size: 2 Copynumber: 17.0 Consensus size: 2
19445 TATTTTTAAC
19455 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
19488 GGTATAATTA
Statistics
Matches: 30, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 29 0.97
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:21360 original size:28 final size:29
Alignment explanation
Indices: 21302--21365 Score: 94
Period size: 28 Copynumber: 2.2 Consensus size: 29
21292 TATTATAAAA
21302 TTATTATTATATTTATTAAAAATGTACAC
1 TTATTATTATATTTATTAAAAATGTACAC
* * *
21331 TTATTATTATA-TTATTAAAACTTTATAC
1 TTATTATTATATTTATTAAAAATGTACAC
21359 TTATTAT
1 TTATTAT
21366 AATTCAACAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
28 21 0.66
29 11 0.34
ACGTcount: A:0.39, C:0.06, G:0.02, T:0.53
Consensus pattern (29 bp):
TTATTATTATATTTATTAAAAATGTACAC
Found at i:21849 original size:15 final size:15
Alignment explanation
Indices: 21829--21857 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
21819 TGGTCTATCG
21829 AACCGAATTAACCAT
1 AACCGAATTAACCAT
21844 AACCGAATTAACCA
1 AACCGAATTAACCA
21858 AACTTTTTTT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.48, C:0.28, G:0.07, T:0.17
Consensus pattern (15 bp):
AACCGAATTAACCAT
Found at i:28691 original size:34 final size:34
Alignment explanation
Indices: 28646--28710 Score: 112
Period size: 34 Copynumber: 1.9 Consensus size: 34
28636 TTTAAACTAA
* *
28646 AACGAATATTAAATATAAGTATGTGTCTAATGCG
1 AACGAAAATTAAATATAAGTACGTGTCTAATGCG
28680 AACGAAAATTAAATATAAGTACGTGTCTAAT
1 AACGAAAATTAAATATAAGTACGTGTCTAAT
28711 ACGGATATGT
Statistics
Matches: 29, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
34 29 1.00
ACGTcount: A:0.45, C:0.09, G:0.15, T:0.31
Consensus pattern (34 bp):
AACGAAAATTAAATATAAGTACGTGTCTAATGCG
Found at i:32602 original size:4 final size:4
Alignment explanation
Indices: 32593--33611 Score: 1770
Period size: 4 Copynumber: 257.2 Consensus size: 4
32583 GAGAGAAGGT
* * * * ** *
32593 ATAC ATAC ATAC ATGC ATGC AGAC ATAC ATAC ATAC ATGC ATGT ATGC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
*
32641 ATGC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
32689 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
32737 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
32785 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * * * * * *
32833 ATAC ACAC ATAC ACAC ACAC ACAC ACAC ACAC ACAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* * *
32881 ATAC ATAC ATAC ATAC ATAC ATAC ACAT ACAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
32929 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
32977 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
33025 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC --AC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
33071 ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
33117 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
33165 ATAC ATAC ATAC ATAC --AC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
33211 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
33259 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
33307 ATAC ATAC ATAC ATAC ATAC ATAC ACAC ACAC ATAC AT-- ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
33353 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
33401 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
33449 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
33497 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
33545 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC AT-- ATAC ATAC ATAC
1 ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC ATAC
* *
33591 ATGC ATGC ATAC ATAC ATAC A
1 ATAC ATAC ATAC ATAC ATAC A
33612 AGGCATATGC
Statistics
Matches: 985, Mismatches: 20, Indels: 20
0.96 0.02 0.02
Matches are distributed among these distances:
2 10 0.01
4 975 0.99
ACGTcount: A:0.49, C:0.26, G:0.01, T:0.24
Consensus pattern (4 bp):
ATAC
Found at i:32848 original size:2 final size:2
Alignment explanation
Indices: 32835--32869 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
32825 ATACATACAT
*
32835 AC AC AC AT AC AC AC AC AC AC AC AC AC AC AC AC AC A
1 AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC AC A
32870 TACATACATA
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.51, C:0.46, G:0.00, T:0.03
Consensus pattern (2 bp):
AC
Found at i:33630 original size:19 final size:19
Alignment explanation
Indices: 33606--33669 Score: 74
Period size: 19 Copynumber: 3.3 Consensus size: 19
33596 TGCATACATA
33606 CATACAAGGCATATGCATG
1 CATACAAGGCATATGCATG
*** * *
33625 CATACATATTTACATGCATA
1 CATACA-AGGCATATGCATG
33645 CATACAAGGCATATGCATG
1 CATACAAGGCATATGCATG
33664 CATACA
1 CATACA
33670 TATTTACATA
Statistics
Matches: 34, Mismatches: 10, Indels: 2
0.74 0.22 0.04
Matches are distributed among these distances:
19 20 0.59
20 14 0.41
ACGTcount: A:0.39, C:0.22, G:0.14, T:0.25
Consensus pattern (19 bp):
CATACAAGGCATATGCATG
Found at i:33639 original size:31 final size:31
Alignment explanation
Indices: 33590--33681 Score: 85
Period size: 39 Copynumber: 2.7 Consensus size: 31
33580 TACATACATA
* **
33590 CATGCATGCATACATACATACAAGGCATATG
1 CATGCATACATATTTACATACAAGGCATATG
33621 CATGCATACATATTTACATGCATACATACAAGGCATATG
1 CATGCATACATA--T---T---TACATACAAGGCATATG
33660 CATGCATACATATTTACATACA
1 CATGCATACATATTTACATACA
33682 GGGATGGATG
Statistics
Matches: 50, Mismatches: 3, Indels: 16
0.72 0.04 0.23
Matches are distributed among these distances:
31 19 0.38
34 1 0.02
37 1 0.02
39 29 0.58
ACGTcount: A:0.39, C:0.22, G:0.12, T:0.27
Consensus pattern (31 bp):
CATGCATACATATTTACATACAAGGCATATG
Found at i:33671 original size:39 final size:39
Alignment explanation
Indices: 33602--33678 Score: 154
Period size: 39 Copynumber: 2.0 Consensus size: 39
33592 TGCATGCATA
33602 CATACATACAAGGCATATGCATGCATACATATTTACATG
1 CATACATACAAGGCATATGCATGCATACATATTTACATG
33641 CATACATACAAGGCATATGCATGCATACATATTTACAT
1 CATACATACAAGGCATATGCATGCATACATATTTACAT
33679 ACAGGGATGG
Statistics
Matches: 38, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
39 38 1.00
ACGTcount: A:0.39, C:0.21, G:0.12, T:0.29
Consensus pattern (39 bp):
CATACATACAAGGCATATGCATGCATACATATTTACATG
Found at i:37497 original size:30 final size:30
Alignment explanation
Indices: 37462--37529 Score: 75
Period size: 30 Copynumber: 2.3 Consensus size: 30
37452 ATATAAATTT
* * *
37462 TTTTTATATTTTTATATTTTTAATA-ATATA
1 TTTTTATATTTTAAAATTTATAA-ACATATA
* *
37492 TTTTTATCTTTTAAAATTTATAAACTTATA
1 TTTTTATATTTTAAAATTTATAAACATATA
37522 TTTTTATA
1 TTTTTATA
37530 AAATTTTATA
Statistics
Matches: 31, Mismatches: 6, Indels: 2
0.79 0.15 0.05
Matches are distributed among these distances:
29 1 0.03
30 30 0.97
ACGTcount: A:0.34, C:0.03, G:0.00, T:0.63
Consensus pattern (30 bp):
TTTTTATATTTTAAAATTTATAAACATATA
Found at i:37513 original size:22 final size:24
Alignment explanation
Indices: 37464--37513 Score: 63
Period size: 22 Copynumber: 2.2 Consensus size: 24
37454 ATAAATTTTT
*
37464 TTTATATTTTTATATTTTTAATAA
1 TTTATATTTTTATACTTTTAATAA
37488 --TATATTTTTAT-CTTTTAA-AA
1 TTTATATTTTTATACTTTTAATAA
37508 TTTATA
1 TTTATA
37514 AACTTATATT
Statistics
Matches: 23, Mismatches: 1, Indels: 6
0.77 0.03 0.20
Matches are distributed among these distances:
20 2 0.09
21 6 0.26
22 15 0.65
ACGTcount: A:0.34, C:0.02, G:0.00, T:0.64
Consensus pattern (24 bp):
TTTATATTTTTATACTTTTAATAA
Found at i:38345 original size:12 final size:12
Alignment explanation
Indices: 38328--38354 Score: 54
Period size: 12 Copynumber: 2.2 Consensus size: 12
38318 GTGCATGGTG
38328 GTTGTCATTGTT
1 GTTGTCATTGTT
38340 GTTGTCATTGTT
1 GTTGTCATTGTT
38352 GTT
1 GTT
38355 CATTTTCTTG
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 15 1.00
ACGTcount: A:0.07, C:0.07, G:0.26, T:0.59
Consensus pattern (12 bp):
GTTGTCATTGTT
Found at i:54293 original size:14 final size:14
Alignment explanation
Indices: 54274--54301 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
54264 TGTTACAAAA
54274 TGTAAAATTTCTTT
1 TGTAAAATTTCTTT
54288 TGTAAAATTTCTTT
1 TGTAAAATTTCTTT
54302 AGTTTTATAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.29, C:0.07, G:0.07, T:0.57
Consensus pattern (14 bp):
TGTAAAATTTCTTT
Found at i:54983 original size:30 final size:30
Alignment explanation
Indices: 54929--55023 Score: 100
Period size: 30 Copynumber: 3.1 Consensus size: 30
54919 TACATTTTAC
* * * *
54929 TTTAGACACTTGACATGTATCATATCGTCAT
1 TTTAGAC-CATGACATATACCATATCATCAT
*
54960 TTTAGACCATGACATATACCATATTATCAT
1 TTTAGACCATGACATATACCATATCATCAT
* ** *
54990 TTTAGACCATGACATGTATTAAATCATCAT
1 TTTAGACCATGACATATACCATATCATCAT
55020 TTTA
1 TTTA
55024 TCTATATATA
Statistics
Matches: 54, Mismatches: 10, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
30 47 0.87
31 7 0.13
ACGTcount: A:0.34, C:0.18, G:0.09, T:0.39
Consensus pattern (30 bp):
TTTAGACCATGACATATACCATATCATCAT
Found at i:55163 original size:18 final size:19
Alignment explanation
Indices: 55134--55169 Score: 65
Period size: 18 Copynumber: 1.9 Consensus size: 19
55124 ATTTTATCTC
55134 AAAATAAAATATTAAAATT
1 AAAATAAAATATTAAAATT
55153 AAAAT-AAATATTAAAAT
1 AAAATAAAATATTAAAAT
55170 AATAATTTTT
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 12 0.71
19 5 0.29
ACGTcount: A:0.69, C:0.00, G:0.00, T:0.31
Consensus pattern (19 bp):
AAAATAAAATATTAAAATT
Found at i:57764 original size:2 final size:2
Alignment explanation
Indices: 57757--57786 Score: 60
Period size: 2 Copynumber: 15.0 Consensus size: 2
57747 GATTTATTGG
57757 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
57787 CGTTAAATGA
Statistics
Matches: 28, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 28 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:66997 original size:25 final size:25
Alignment explanation
Indices: 66968--67021 Score: 108
Period size: 25 Copynumber: 2.2 Consensus size: 25
66958 GGGGCTGTTT
66968 GTGCGAGAGGTGGCTGCTGGTGGCG
1 GTGCGAGAGGTGGCTGCTGGTGGCG
66993 GTGCGAGAGGTGGCTGCTGGTGGCG
1 GTGCGAGAGGTGGCTGCTGGTGGCG
67018 GTGC
1 GTGC
67022 AAGAAGGGAA
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
25 29 1.00
ACGTcount: A:0.07, C:0.17, G:0.56, T:0.20
Consensus pattern (25 bp):
GTGCGAGAGGTGGCTGCTGGTGGCG
Done.