genome.fa.s1863.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001863.1 Hibiscus syriacus cultivar Beakdansim tig00003767_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87034

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13424--13467	22	2.0	22	95	0	79	27	20	4	47	1.69
15586--15614	14	2.1	14	93	6	51	41	6	0	51	1.28
19114--19180	22	3.0	22	85	8	84	55	7	13	23	1.63
19114--19175	23	2.8	23	88	9	85	53	8	14	24	1.68
26412--26470	28	2.1	28	90	0	91	45	6	3	44	1.47
34863--34904	17	2.6	17	85	7	52	30	4	0	64	1.14
39342--39384	9	4.7	9	80	5	50	72	9	4	13	1.26
39336--39385	19	2.7	19	78	3	57	72	8	4	16	1.24
39416--39457	17	2.6	17	85	7	52	30	4	0	64	1.14
39844--39884	20	2.0	20	85	9	55	56	0	2	41	1.13
42130--42484	177	2.0	177	97	2	669	31	20	15	33	1.93
44921--44971	27	1.9	27	84	4	68	41	13	11	33	1.81
45242--45287	18	2.7	17	90	6	67	36	6	28	28	1.82
46020--46317	153	1.9	153	85	8	415	34	30	12	23	1.91
46987--47058	30	2.4	30	95	2	126	20	22	41	15	1.89
47621--47722	50	2.0	50	98	0	195	56	16	1	24	1.50
47875--47931	30	1.9	30	92	0	96	15	43	19	21	1.87
52423--52542	43	2.7	43	83	7	136	29	17	26	26	1.98
52438--52624	43	4.3	43	80	1	169	27	19	24	28	1.98
52483--52690	86	2.4	86	86	0	281	23	19	24	33	1.97
52465--52710	43	5.7	43	78	0	204	24	19	23	32	1.98
52483--52735	86	2.9	82	75	12	231	23	19	24	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52532--52776	129	1.9	127	79	8	271	23	19	24	33	1.97
54680--54728	3	16.3	3	100	0	98	34	0	0	65	0.93
57591--57972	42	9.2	42	82	3	443	34	18	19	26	1.96
57606--57972	83	4.4	85	83	6	430	34	19	19	26	1.96
57591--57972	125	3.1	124	87	3	525	34	18	19	26	1.96
57606--57972	166	2.2	166	87	2	488	34	19	19	26	1.96
58539--58742	41	5.0	41	82	7	202	32	16	16	34	1.91
58541--58744	82	2.5	81	82	11	229	32	16	16	35	1.91
58582--58908	82	3.9	82	77	12	276	28	18	18	34	1.95
58582--58909	42	7.9	40	77	14	224	28	18	18	34	1.95
58606--58908	166	1.8	165	79	11	350	26	18	19	35	1.95
64483--64532	26	2.0	26	88	4	75	30	2	0	68	1.01
66044--66076	3	11.0	3	100	0	66	66	0	0	33	0.92
74447--74656	18	11.7	18	92	0	312	19	26	41	13	1.88

Tables:   1

The End!