Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001865.1 Hibiscus syriacus cultivar Beakdansim tig00003776_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85564

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3712--3745
2
17.0
2
100
0
68
50
0
0
50
1.00
12480--12534
21
2.5
21
79
8
56
25
38
3
32
1.73
23845--24088
119
2.0
119
97
0
461
36
10
20
32
1.86
24548--24589
22
1.9
22
90
0
66
45
2
0
52
1.13
24863--24949
14
6.1
14
69
6
59
54
0
0
45
1.00
24889--24949
20
2.8
22
74
16
56
54
0
0
45
1.00
24871--24928
17
3.6
17
70
25
54
53
0
0
46
1.00
24866--24949
28
3.0
27
74
6
78
53
0
0
46
1.00
25157--25208
13
3.9
13
82
2
59
32
1
1
63
1.16
25182--25222
21
2.0
20
85
4
55
29
0
2
68
1.03
27369--27406
20
1.9
20
88
0
58
44
7
0
47
1.32
27711--27816
36
2.9
36
95
0
194
30
16
15
38
1.89
29683--29720
17
2.2
17
100
0
76
42
13
31
13
1.82
34546--34579
7
4.9
7
100
0
68
14
26
29
29
1.95
43425--43503
21
3.8
21
79
9
90
22
21
24
31
1.98
43593--43629
12
3.1
12
88
0
56
35
40
16
8
1.78
44090--44183
21
4.6
20
78
7
84
36
21
22
20
1.95
44083--44177
41
2.3
41
94
5
167
34
21
22
22
1.97
44488--44534
11
4.5
11
76
10
53
44
2
2
51
1.25
44482--44559
31
2.5
31
82
13
99
48
1
2
47
1.23
52419--52565
72
2.0
73
86
1
206
42
14
10
31
1.81
53269--53388
63
1.9
63
84
6
163
40
35
10
13
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54690--54733
23
1.9
23
90
0
70
25
11
13
50
1.75
57640--57719
40
2.0
40
100
0
160
27
17
2
52
1.57
58226--58279
22
2.5
22
93
0
99
18
16
27
37
1.93
58358--58390
6
5.5
6
100
0
66
33
51
15
0
1.43
58990--59073
41
2.0
42
88
2
125
41
21
19
17
1.90
58990--59054
22
3.1
21
69
13
62
38
23
18
20
1.93
59045--59140
20
4.8
20
90
0
147
46
20
21
10
1.80
59017--59140
60
2.0
62
87
9
184
45
20
20
12
1.84
59152--59189
19
1.9
19
89
5
58
34
15
28
21
1.94
63801--63962
43
3.8
43
84
0
207
40
25
10
24
1.87
63804--63962
86
1.8
86
90
0
255
40
24
10
24
1.86
78112--78137
13
2.0
13
100
0
52
15
0
30
53
1.42
85225--85305
27
2.9
27
85
12
101
43
9
14
32
1.79

Tables:   1

The End!