Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001866.1 Hibiscus syriacus cultivar Beakdansim tig00003781_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  106955

Tables:   1   

This is table  1  of  1  ( 49 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
626--664
20
2.0
20
89
0
60
28
28
15
28
1.96
655--749
21
4.6
21
76
16
90
34
20
22
23
1.96
629--756
62
2.1
62
94
2
222
32
21
21
25
1.97
745--853
21
5.3
21
80
4
132
21
18
28
32
1.96
739--878
42
3.4
42
87
4
162
22
18
25
33
1.97
1494--1525
5
6.4
5
96
0
55
0
25
53
21
1.46
1625--1702
19
3.9
19
73
12
66
37
21
17
23
1.94
1629--1758
40
3.2
41
86
7
176
36
23
16
22
1.94
1654--1767
21
5.6
21
71
14
85
34
25
18
21
1.96
1651--1767
41
2.9
42
85
3
159
35
24
17
22
1.96
1775--1952
21
8.6
21
84
7
238
22
21
25
30
1.99
1775--1952
82
2.1
83
91
6
290
22
21
25
30
1.99
4774--4828
28
2.0
28
100
0
110
32
0
30
36
1.58
4975--5030
28
1.9
28
85
7
76
16
10
19
53
1.71
8061--8103
19
2.3
19
100
0
86
23
4
20
51
1.66
8801--8826
11
2.4
11
100
0
52
38
15
0
46
1.46
9522--9547
2
13.0
2
100
0
52
50
0
0
50
1.00
20364--20510
60
2.5
60
81
6
163
31
19
17
32
1.94
21996--22043
25
2.0
25
91
4
80
39
4
16
39
1.68
33188--33228
21
2.0
21
85
0
55
29
12
2
56
1.49
33745--33796
24
2.1
25
89
3
79
30
7
11
50
1.67
35912--35955
22
2.0
23
90
4
72
50
29
0
20
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40414--40464
26
2.0
24
81
7
57
43
3
3
49
1.39
40635--40695
25
2.5
25
81
7
72
29
0
1
68
0.99
40632--40694
24
2.6
25
82
12
85
30
0
1
68
0.99
41450--41508
19
2.9
20
85
10
75
22
22
25
30
1.99
41545--41616
15
4.9
15
79
3
92
43
6
18
31
1.76
41545--41616
30
2.4
30
95
2
128
43
6
18
31
1.76
41599--41668
20
3.5
20
96
0
131
40
10
14
35
1.79
41834--41937
29
3.5
28
77
21
90
51
1
0
45
1.18
41885--41976
29
3.2
28
75
15
89
47
1
1
50
1.15
41948--41987
16
2.6
16
84
4
55
55
0
0
45
0.99
41921--41994
21
3.1
25
79
16
86
50
0
1
48
1.09
41962--42004
21
2.0
22
86
4
61
51
0
0
48
1.00
42332--42429
21
4.7
19
68
29
67
18
18
26
36
1.94
42355--42426
21
3.4
21
73
21
78
18
19
26
36
1.94
42324--42430
42
2.6
41
92
3
178
20
19
24
35
1.96
43367--43554
21
9.1
21
70
15
117
34
25
17
22
1.96
43407--43448
19
2.2
19
86
0
57
38
26
14
21
1.91
43367--43486
61
2.0
61
93
0
204
36
24
15
23
1.94
47368--47400
14
2.2
16
89
10
52
63
6
0
30
1.18
47375--47446
29
2.4
30
79
9
85
54
1
0
44
1.08
59937--60042
32
3.4
32
88
8
150
50
3
1
44
1.31
65211--65266
28
2.0
28
82
0
67
32
8
14
44
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
65953--66021
23
3.0
23
93
2
111
30
17
13
39
1.87
69473--69529
29
2.0
29
92
0
96
36
28
5
29
1.79
73135--73209
38
2.0
37
84
5
98
45
1
5
48
1.33
73358--73410
20
2.7
20
96
0
97
32
24
3
39
1.73
106793--106844
27
1.9
27
92
0
86
36
21
11
30
1.89

Tables:   1

The End!