Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01001867.1 Hibiscus syriacus cultivar Beakdansim tig00003782_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 73727
ACGTcount: A:0.33, C:0.16, G:0.16, T:0.35
Found at i:711 original size:120 final size:123
Alignment explanation
Indices: 492--746 Score: 331
Period size: 120 Copynumber: 2.1 Consensus size: 123
482 AAGTTGTGAT
* * * *
492 ATGTTGGGGCATGACTGAACCCAATCATGTTGAGATGAAAAGATTCAGACCAAGGAGGCATGAAG
1 ATGTT-GGGCATGACTGAACCCAATCATGTCGAGATGAAAAGATTAAGACCAAGAAGGAATGAAG
* ** *
557 AATGAGCCTTACAATTTGAGGTGATGGGGCATTTTGAAGGCCCGTA-CCATATAAGATA
65 AATGAGCCTTACAAGTTGAGGTGATGGAACATTTTGAAGGCCCGTATCAATATAAGATA
* *
615 ATGTTGGGCATGACTGAACCCACATCATGTCGAGATG-ACA-A-TAAGACTAAGAAGGAATTG-A
1 ATGTTGGGCATGACTGAACCCA-ATCATGTCGAGATGAAAAGATTAAGACCAAGAAGGAA-TGAA
* *
676 GAATGAGCCTTACAAGTTGAGGTGTTGGAATATTTTGAAGGCCCGTATCAATATAAGATA
64 GAATGAGCCTTACAAGTTGAGGTGATGGAACATTTTGAAGGCCCGTATCAATATAAGATA
736 ATGTTGTGGCA
1 ATGTTG-GGCA
747 CAAGTGACGA
Statistics
Matches: 116, Mismatches: 12, Indels: 9
0.85 0.09 0.07
Matches are distributed among these distances:
120 55 0.47
121 20 0.17
122 23 0.20
123 18 0.16
ACGTcount: A:0.34, C:0.15, G:0.27, T:0.25
Consensus pattern (123 bp):
ATGTTGGGCATGACTGAACCCAATCATGTCGAGATGAAAAGATTAAGACCAAGAAGGAATGAAGA
ATGAGCCTTACAAGTTGAGGTGATGGAACATTTTGAAGGCCCGTATCAATATAAGATA
Found at i:1951 original size:36 final size:36
Alignment explanation
Indices: 1909--1985 Score: 100
Period size: 36 Copynumber: 2.1 Consensus size: 36
1899 AGCAAAGTCA
* * * * *
1909 ATCTTAAGCCTTCACTAAAGAGTAGTGAAGCAAACC
1 ATCTTAAGCATGCACCAAAGAATAATGAAGCAAACC
*
1945 GTCTTAAGCATGCACCAAAGAATAATGAAGCAAACC
1 ATCTTAAGCATGCACCAAAGAATAATGAAGCAAACC
1981 ATCTT
1 ATCTT
1986 GTGTCTTCAT
Statistics
Matches: 34, Mismatches: 7, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
36 34 1.00
ACGTcount: A:0.40, C:0.22, G:0.16, T:0.22
Consensus pattern (36 bp):
ATCTTAAGCATGCACCAAAGAATAATGAAGCAAACC
Found at i:2576 original size:53 final size:54
Alignment explanation
Indices: 2393--3626 Score: 701
Period size: 54 Copynumber: 22.9 Consensus size: 54
2383 AGTGAAGCAA
* *
2393 AAGAAGATTTTCGAGTT-TCATACTCCCTAGAGAAAAAGGGAGCGAACCCGTTTG
1 AAGAAGATGTTCGAGTTCT-ATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
* *
2447 AAG-A-TTGTTCGAGTT-TCATACTCCCT-GAAGAAAGAGGGAGCGAACCCATTTG
1 AAGAAGATGTTCGAGTTCT-ATACTCCCTAG-AGAAAGAGGGAGCGAACCCGTTTG
* * * * * *
2499 AAGAAGAGGTACGAGTTTTATACTCCTTAAAGAAAGAGGGAGCGAACCAG-TTG
1 AAGAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
*
2552 AAGAAGATGTCCGAGTTCTATACTCCCTAGAGAAAGA-GGAGCGAACCCGTTTG
1 AAGAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
*
2605 AAGAAGATGTCCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
1 AAGAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
*
2659 AAGAAGAT-TTCTGAGTT-TCATACTTCCTAGAGAAAGAGGGAGCGAACCCG--TG
1 AAGAAGATGTTC-GAGTTCT-ATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
* * * * * * *
2711 -TGAAGATATCCGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTG
1 AAGAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
* * *
2764 AAG-AGATGTTTGAGTTCCATACTCCCTAGAG-AAGAGGGAGAGAACCCG--TG
1 AAGAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
* * * * * *
2814 -TGAAGATATTCGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTG
1 AAGAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
* * *
2867 AAG-AGATGTTTGAGTTCCATACTCCTTAGAGAAAGA-GGAGCGAACCCGTTTG
1 AAGAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
* * * *
2919 AAGAAGATTTTCGAGTTCCATACTTCCTAGAGAAAGAGGGAGTGAACCCCG--T-
1 AAGAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAA-CCCGTTTG
* * * * *
2971 AAGAAGATTATTCGAGTTCTATACTGCCTGAAAGAAAGAGGGAGTGAACCCGATTG
1 AAGAAGA-TGTTCGAGTTCTATACTCCCT-AGAGAAAGAGGGAGCGAACCCGTTTG
** * * * **
3027 TTGAAGATTGTTCGAG-TCTTATACTCTCTCT-GAAGAAATAGGGAG-TAGACACGACTG
1 AAGAAGA-TGTTCGAGTTC-TATACTC-C-CTAG-AGAAAGAGGGAGCGA-ACCCGTTTG
** * * * * * *
3084 TTGAAGATTGTTCGAG-TCTTATACTCTCTAAAGAAATAGGGAGC-ATACACGATCG
1 AAGAAGA-TGTTCGAGTTC-TATACTCCCTAGAGAAAGAGGGAGCGA-ACCCGTTTG
** * * * * * *
3139 TTGAAGATTGTTCGAG-TCTTATACT-CTTTGA-AGAATAGGGAGCGGACACGATTG
1 AAGAAGA-TGTTCGAGTTC-TATACTCCCTAGAGA-AAGAGGGAGCGAACCCGTTTG
** * * *
3193 TTGAAGATTGTTCGAGTAT-TATACTCTCT-GAATGAATAGA--GAGC-AGACACGATTG
1 AAGAAGA-TGTTCGAGT-TCTATACTCCCTAG-A-GAA-AGAGGGAGCGA-ACCCGTTTG
** * ** * * ** * *
3248 TTGAAGATTGTTTGAG-TCTTATACTTTCT-GAAGGAATAGGGAGAAAACACGGTTG
1 AAGAAGA-TGTTCGAGTTC-TATACTCCCTAG-AGAAAGAGGGAGCGAACCCGTTTG
** * * * * * *
3303 TTGAAGGTTGTTCGAG-TCTTATACTCTCT-GAAGGAATAGGGAGC-AGACACGATTG
1 AAGAA-GATGTTCGAGTTC-TATACTCCCTAG-AGAAAGAGGGAGCGA-ACCCGTTTG
** * * * * *
3358 TTGAAGATTGTTCGAG-TCTTATACTCTCT-GAAGGAATAGGGAGC-AGACACGATTG
1 AAGAAGA-TGTTCGAGTTC-TATACTCCCTAG-AGAAAGAGGGAGCGA-ACCCGTTTG
** * *
3413 TTGAAGATGTTCGAGTTCTATACTTCCTAAAGAAAGAGGGAGCGAACCCGATTT-
1 AAGAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCG-TTTG
* * * ***
3467 CAGAAGAT-TTGCGAGTTATATACTCCCTAAAGAAAGAGGGAGCGAACCCGAAGG
1 AAGAAGATGTT-CGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
* * * * * * *
3521 CATAAGATTGTTCGAGTTC-CTACTCCCTAAAGAAATAGGGAGCGAACCCATTGG
1 AAGAAGA-TGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
* * * *
3575 CAGAAGATTATTCGAGTT-TCATACTCTCT-GAAGAAAGAGGGAGCAAACCCGT
1 AAGAAGA-TGTTCGAGTTCT-ATACTCCCTAG-AGAAAGAGGGAGCGAACCCGT
3627 AGGCAGAAGA
Statistics
Matches: 998, Mismatches: 119, Indels: 125
0.80 0.10 0.10
Matches are distributed among these distances:
49 1 0.00
50 26 0.03
51 54 0.05
52 101 0.10
53 195 0.20
54 295 0.30
55 250 0.25
56 26 0.03
57 48 0.05
58 2 0.00
ACGTcount: A:0.32, C:0.17, G:0.26, T:0.25
Consensus pattern (54 bp):
AAGAAGATGTTCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTG
Found at i:2593 original size:106 final size:105
Alignment explanation
Indices: 2404--3022 Score: 670
Period size: 106 Copynumber: 5.9 Consensus size: 105
2394 AGAAGATTTT
* * * * *
2404 CGAGTTTCATACTCCCTAGAGAAAAAGGGAGCGAACCCGTTTGAAGA-TTGTTCGAGTT-TCATA
1 CGAGTTCCATACTCCTTAAAGAAAGAGGGAGCGAACCCGTTTGAAGAGATGTTCGAGTTCT-ATA
* *
2467 CTCCCT-GAAGAAAGAGGGAGCGAACCCATTTGAAGAAGAGGTA
65 CTCCCTAG-AGAAAGAGGGAGCGAACCCGTTTGAAGAAGA--TC
** * *
2510 CGAGTTTTATACTCCTTAAAGAAAGAGGGAGCGAACCAG-TTGAAGAAGATGTCCGAGTTCTATA
1 CGAGTTCCATACTCCTTAAAGAAAGAGGGAGCGAACCCGTTTGAAG-AGATGTTCGAGTTCTATA
2574 CTCCCTAGAGAAAGA-GGAGCGAACCCGTTTGAAGAAGATGTC
65 CTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGA--TC
* * *
2616 CGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGAT-TTCTGAGTT-TCA
1 CGAGTTCCATACTCCTTAAAGAAAGAGGGAGCGAACCCGTTTGAAG-AGATGTTC-GAGTTCT-A
* * *
2679 TACTTCCTAGAGAAAGAGGGAGCGAACCCGTGTGAAG-ATATC
63 TACTCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATC
* * *
2721 CGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGAGATGTTTGAGTTCCATAC
1 CGAGTTCCATACTCCTTAAAGAAAGAGGGAGCGAACCCGTTTGAAGAGATGTTCGAGTTCTATAC
* * * *
2786 TCCCTAGAG-AAGAGGGAGAGAACCCGTGTGAAG-ATATT
66 TCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATC
* * *
2824 CGAGTTCCATACTCCTTAAAGAAAGAAGGAGCGAACCCGTTTGAAGAGATGTTTGAGTTCCATAC
1 CGAGTTCCATACTCCTTAAAGAAAGAGGGAGCGAACCCGTTTGAAGAGATGTTCGAGTTCTATAC
* *
2889 TCCTTAGAGAAAGA-GGAGCGAACCCGTTTGAAGAAGATTTT
66 TCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGA--TC
* * ** * *
2930 CGAGTTCCATACTTCC-TAGAGAAAGAGGGAGTGAACCCCGTAAGAAGA-TTATTCGAGTTCTAT
1 CGAGTTCCATAC-TCCTTAAAGAAAGAGGGAGCGAA-CCCGTTTGAAGAGATGTTCGAGTTCTAT
* * *
2993 ACTGCCTGAAAGAAAGAGGGAGTGAACCCG
64 ACTCCCT-AGAGAAAGAGGGAGCGAACCCG
3023 ATTGTTGAAG
Statistics
Matches: 451, Mismatches: 44, Indels: 34
0.85 0.08 0.06
Matches are distributed among these distances:
103 117 0.26
104 27 0.06
105 52 0.12
106 143 0.32
107 81 0.18
108 31 0.07
ACGTcount: A:0.33, C:0.19, G:0.26, T:0.22
Consensus pattern (105 bp):
CGAGTTCCATACTCCTTAAAGAAAGAGGGAGCGAACCCGTTTGAAGAGATGTTCGAGTTCTATAC
TCCCTAGAGAAAGAGGGAGCGAACCCGTTTGAAGAAGATC
Found at i:3009 original size:314 final size:315
Alignment explanation
Indices: 2395--3022 Score: 826
Period size: 314 Copynumber: 2.0 Consensus size: 315
2385 TGAAGCAAAA
* * * * *
2395 GAAGATTTTCGAGTTTCATACTCCCTAGAGAAAAAGGGAGCGAACCCGTTTGAAGATTGTTCGAG
1 GAAGATATCCGAGTTCCATACTCCCTAAAGAAAAAGGGAGCGAACCCGTTTGAAGAATGTTCGAG
* * * **
2460 TTTCATACTCCCTGAAGAAAGAGGGAGCGAACCCATTTGAAGAAGAGGTACGAGTTTTATACTCC
66 TTCCATACTCCCTGAAGAAAGAGGGAGAGAACCCATGTGAAGAAGA-GTACGAGTTCCATACTCC
* *
2525 TTAAAGAAAGAGGGAGCGAACCAGTTGAAGAAGATGTCCGAGTTCTATACTCCCTAGAGAAAGAG
130 TTAAAGAAAGAAGGAGCGAACCAGTTGAAGAAGATGTCCGAGTTCCATACTCCCTAGAGAAAGAG
*
2590 GAGCGAACCCGTTTGAAGAAGATGTCCGAGTTCTATACTCCCTAGAGAAAGAGGGAGCGAACCCG
195 GAGCGAACCCGTTTGAAGAAGATGTCCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCG
* *
2655 TTTGAAGAAGATTTCTGAGTTTCATACTTCCTAGAGAAAGAGGGAGCGAACCCGTGT
260 -TTGAAGAAGATTTCTGAGTTTCATACTGCCTAAAGAAAGAGGGAGCGAACCCGTGT
* *
2712 GAAGATATCCGAGTTCCATACTCCTTAAAGAAAGAA-GGAGCGAACCCGTTTGAAGAGATGTTTG
1 GAAGATATCCGAGTTCCATACTCCCTAAAGAAA-AAGGGAGCGAACCCGTTTGAAGA-ATGTTCG
* * *
2776 AGTTCCATACTCCCT--AGAGAAGAGGGAGAGAACCCGTGTGAAG-ATA-TTCGAGTTCCATACT
64 AGTTCCATACTCCCTGAAGA-AAGAGGGAGAGAACCCATGTGAAGAAGAGTACGAGTTCCATACT
* ** *
2837 CCTTAAAGAAAGAAGGAGCGAACCCGTTTGAAG-AGATGTTTGAGTTCCATACTCCTTAGAGAAA
128 CCTTAAAGAAAGAAGGAGCGAACCAG-TTGAAGAAGATGTCCGAGTTCCATACTCCCTAGAGAAA
* * * *
2901 GAGGAGCGAACCCGTTTGAAGAAGATTTTCGAGTTCCATACTTCCTAGAGAAAGAGGGAGTGAAC
192 GAGGAGCGAACCCGTTTGAAGAAGATGTCCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAA-
*
2966 CCCG-T-AAGAAGATTAT-TCGAG-TTCTATACTGCCTGAAAGAAAGAGGGAGTGAACCCG
256 CCCGTTGAAGAAGATT-TCT-GAGTTTC-ATACTGCCT-AAAGAAAGAGGGAGCGAACCCG
3023 ATTGTTGAAG
Statistics
Matches: 273, Mismatches: 29, Indels: 21
0.85 0.09 0.07
Matches are distributed among these distances:
312 13 0.05
313 13 0.05
314 142 0.52
315 10 0.04
316 5 0.02
317 69 0.25
318 21 0.08
ACGTcount: A:0.33, C:0.18, G:0.26, T:0.23
Consensus pattern (315 bp):
GAAGATATCCGAGTTCCATACTCCCTAAAGAAAAAGGGAGCGAACCCGTTTGAAGAATGTTCGAG
TTCCATACTCCCTGAAGAAAGAGGGAGAGAACCCATGTGAAGAAGAGTACGAGTTCCATACTCCT
TAAAGAAAGAAGGAGCGAACCAGTTGAAGAAGATGTCCGAGTTCCATACTCCCTAGAGAAAGAGG
AGCGAACCCGTTTGAAGAAGATGTCCGAGTTCCATACTCCCTAGAGAAAGAGGGAGCGAACCCGT
TGAAGAAGATTTCTGAGTTTCATACTGCCTAAAGAAAGAGGGAGCGAACCCGTGT
Found at i:3142 original size:55 final size:55
Alignment explanation
Indices: 2973--3619 Score: 601
Period size: 55 Copynumber: 11.8 Consensus size: 55
2963 AACCCCGTAA
* * * *
2973 GAAGATTATTCGAGT-TCTATACTGC-CTGAAAGAAAGAGGGAG-TGAACCCGATTGTT
1 GAAGATTGTTCGAGTCT-TATACT-CTCT-AAAGAAATAGGGAGCAG-ACACGATTGTT
* * *
3029 GAAGATTGTTCGAGTCTTATACTCTCTCTGAAGAAATAGGGAGTAGACACGACTGTT
1 GAAGATTGTTCGAGTCTTATA--CTCTCTAAAGAAATAGGGAGCAGACACGATTGTT
* *
3086 GAAGATTGTTCGAGTCTTATACTCTCTAAAGAAATAGGGAGCATACACGATCGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTAAAGAAATAGGGAGCAGACACGATTGTT
* * *
3141 GAAGATTGTTCGAGTCTTATACTCTTTGAAG-AATAGGGAGCGGACACGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTAAAGAAATAGGGAGCAGACACGATTGTT
* * *
3195 GAAGATTGTTCGAGTATTATACTCTCTGAATG-AATAGAGAGCAGACACGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCT-AAAGAAATAGGGAGCAGACACGATTGTT
* * * * * * *
3250 GAAGATTGTTTGAGTCTTATACTTTCTGAAGGAATAGGGAGAAAACACGGTTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTAAAGAAATAGGGAGCAGACACGATTGTT
* * *
3305 GAAGGTTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTAAAGAAATAGGGAGCAGACACGATTGTT
* *
3360 GAAGATTGTTCGAGTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTT
1 GAAGATTGTTCGAGTCTTATACTCTCTAAAGAAATAGGGAGCAGACACGATTGTT
* * *
3415 GAAGA-TGTTCGAGT-TCTATACT-TCCTAAAGAAAGAGGGAGC-GAACCCGATT-TCA
1 GAAGATTGTTCGAGTCT-TATACTCT-CTAAAGAAATAGGGAGCAG-ACACGATTGT-T
* * * * ** *
3469 GAAGATT-TGCGAGT-TATATACTCCCTAAAGAAAGAGGGAGC-GAACCCGAAGGCAT
1 GAAGATTGTTCGAGTCT-TATACTCTCTAAAGAAATAGGGAGCAG-ACACGATTG-TT
** * * **
3524 -AAGATTGTTCGAGT-TCCTACTCCCTAAAGAAATAGGGAGC-GA-ACCCATTGGCA
1 GAAGATTGTTCGAGTCTTATACTCTCTAAAGAAATAGGGAGCAGACA-CGATT-GTT
* * *
3577 GAAGATTATTCGAGT-TTCATACTCTCTGAAGAAAGAGGGAGCA
1 GAAGATTGTTCGAGTCTT-ATACTCTCTAAAGAAATAGGGAGCA
3620 AACCCGTAGG
Statistics
Matches: 504, Mismatches: 66, Indels: 42
0.82 0.11 0.07
Matches are distributed among these distances:
53 7 0.01
54 170 0.34
55 260 0.52
56 18 0.04
57 44 0.09
58 5 0.01
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.28
Consensus pattern (55 bp):
GAAGATTGTTCGAGTCTTATACTCTCTAAAGAAATAGGGAGCAGACACGATTGTT
Found at i:3475 original size:219 final size:222
Alignment explanation
Indices: 2973--3619 Score: 720
Period size: 219 Copynumber: 2.9 Consensus size: 222
2963 AACCCCGTAA
* * *
2973 GAAGATTATTCGAGTTCTATACTGCCTGAAAGAAAGAGGGAGTGAACCCGATTGTTGAAGATTGT
1 GAAGATTGTTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCCGATTGTTGAAGATTGT
* *
3038 TCGAGTCTTATACTCTCTCTGAAGAAATAGGGAGTAGACACGACTGTTGAAGATTGTTCGAGTCT
66 TCGAGTCTTATACTCTCTCTGAAGAAATAGGGAGAAAACACGACTGTTGAAGATTGTTCGAGTCT
* *
3103 TATACTCTCTAAAGAAATAGGGAGCATACACGATCGTTGAAGATTGTTCGAGTCTTATACTCTTT
131 TATACTCTCTAAAGAAATAGGGAGCAGACACGATCGTTGAAGATTGTTCGAGTCTTATACTCTCT
*
3168 GAAGAATAGGGAGCGGACACGATTGTT
196 GAAGAATAGGGAGCAGACACGATTGTT
* *
3195 GAAGATTGTTCGAGTAT-TATAC-TCTCTGAATGAATAGA--GAGC-AGACACGATTGTTGAAGA
1 GAAGATTGTTCGAGT-TCTATACTTC-CTGAAAGAA-AGAGGGAGCGA-ACCCGATTGTTGAAGA
* * ** *
3255 TTGTTTGAGTCTTATACT-T-TCTGAAGGAATAGGGAGAAAACACGGTTGTTGAAGGTTGTTCGA
62 TTGTTCGAGTCTTATACTCTCTCTGAAGAAATAGGGAGAAAACACGACTGTTGAAGATTGTTCGA
* * *
3318 GTCTTATACTCTCTGAAGGAATAGGGAGCAGACACGATTGTTGAAGATTGTTCGAGTCTTATACT
127 GTCTTATACTCTCTAAAGAAATAGGGAGCAGACACGATCGTTGAAGATTGTTCGAGTCTTATACT
3383 CTCTGAAGGAATAGGGAGCAGACACGATTGTT
192 CTCTGAA-GAATAGGGAGCAGACACGATTGTT
*
3415 GAAGA-TGTTCGAGTTCTATACTTCCT-AAAGAAAGAGGGAGCGAACCCGATT-TCAGAAGATT-
1 GAAGATTGTTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCCGATTGT-TGAAGATTG
* * * ** * ** *
3476 TGCGAGT-TATATACTC-C-CTAAAGAAAGAGGGAGCGAACCCGAAGGCAT-AAGATTGTTCGAG
65 TTCGAGTCT-TATACTCTCTCTGAAGAAATAGGGAGAAAACACGACTG-TTGAAGATTGTTCGAG
** * * * ** *
3537 T-TCCTACTCCCTAAAGAAATAGGGAGC-GA-ACCCATTGGCAGAAGATTATTCGAGT-TTCATA
128 TCTTATACTCTCTAAAGAAATAGGGAGCAGACA-CGA-TCGTTGAAGATTGTTCGAGTCTT-ATA
*
3598 CTCTCTGAAGAAAGAGGGAGCA
190 CTCTCTGAAG-AATAGGGAGCA
3620 AACCCGTAGG
Statistics
Matches: 361, Mismatches: 45, Indels: 43
0.80 0.10 0.10
Matches are distributed among these distances:
215 1 0.00
216 7 0.02
217 63 0.17
218 50 0.14
219 140 0.39
220 33 0.09
221 36 0.10
222 27 0.07
223 4 0.01
ACGTcount: A:0.32, C:0.15, G:0.26, T:0.28
Consensus pattern (222 bp):
GAAGATTGTTCGAGTTCTATACTTCCTGAAAGAAAGAGGGAGCGAACCCGATTGTTGAAGATTGT
TCGAGTCTTATACTCTCTCTGAAGAAATAGGGAGAAAACACGACTGTTGAAGATTGTTCGAGTCT
TATACTCTCTAAAGAAATAGGGAGCAGACACGATCGTTGAAGATTGTTCGAGTCTTATACTCTCT
GAAGAATAGGGAGCAGACACGATTGTT
Found at i:3819 original size:16 final size:17
Alignment explanation
Indices: 3798--3856 Score: 59
Period size: 19 Copynumber: 3.4 Consensus size: 17
3788 CGGGTTATAA
3798 ATATTATATT-TAAATT
1 ATATTATATTATAAATT
*
3814 ATATTATTATTATATATT
1 ATATTA-TATTATAAATT
*
3832 ATTATTATTATTAT-TATT
1 A-TATTA-TATTATAAATT
3850 ATATTAT
1 ATATTAT
3857 TAATGTTACA
Statistics
Matches: 39, Mismatches: 1, Indels: 6
0.85 0.02 0.13
Matches are distributed among these distances:
16 7 0.18
17 9 0.23
18 11 0.28
19 12 0.31
ACGTcount: A:0.39, C:0.00, G:0.00, T:0.61
Consensus pattern (17 bp):
ATATTATATTATAAATT
Found at i:3823 original size:3 final size:3
Alignment explanation
Indices: 3811--3858 Score: 73
Period size: 3 Copynumber: 16.3 Consensus size: 3
3801 TTATATTTAA
3811 ATT A-T ATT ATT ATT ATAT ATT ATT ATT ATT ATT ATT ATT A-T ATT
1 ATT ATT ATT ATT ATT AT-T ATT ATT ATT ATT ATT ATT ATT ATT ATT
3855 ATT A
1 ATT A
3859 ATGTTACATA
Statistics
Matches: 42, Mismatches: 0, Indels: 6
0.88 0.00 0.12
Matches are distributed among these distances:
2 4 0.10
3 35 0.83
4 3 0.07
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (3 bp):
ATT
Found at i:3826 original size:22 final size:24
Alignment explanation
Indices: 3799--3854 Score: 80
Period size: 25 Copynumber: 2.4 Consensus size: 24
3789 GGGTTATAAA
3799 TATTATATTTA-AATTA-TATTAT
1 TATTATATTTATAATTATTATTAT
*
3821 TATTATATATTATTATTATTATTAT
1 TATTATAT-TTATAATTATTATTAT
3846 TATTATATT
1 TATTATATT
3855 ATTAATGTTA
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
22 8 0.27
23 3 0.10
24 5 0.17
25 14 0.47
ACGTcount: A:0.38, C:0.00, G:0.00, T:0.62
Consensus pattern (24 bp):
TATTATATTTATAATTATTATTAT
Found at i:4475 original size:146 final size:146
Alignment explanation
Indices: 4211--4595 Score: 592
Period size: 146 Copynumber: 2.6 Consensus size: 146
4201 CTCGCCGGAA
* * * ** *
4211 ATCGGGATCTCCGATCAACATTCCGAACATTCAAAAGTTGCGTAAGGCCATCACAAACAACATAT
1 ATCGGAATCTGCGATCAATATTCCGAACGGTCAAAAGTTGCGGAAGGCCATCACAAACAACATAT
* *
4276 TGAAAAATCAGGACGATCTGACGGTGGACGGTGACGGATCGGAGAAAACAAATCCGGGCGGTTTT
66 TGAAAAATCAGGACGATCAGACGGTGGACGGTGACGGATCGGAGAAAACAAATCCGGACGGTTTT
*
4341 TAGCCTCTTGTCGGTG
131 TAGCCTCTTGCCGGTG
** *
4357 ATCGGAATCTTTGATCAATATTCCGAACGGTCAAAAGTTGCGGAAGGCCATCACGAACAACATAT
1 ATCGGAATCTGCGATCAATATTCCGAACGGTCAAAAGTTGCGGAAGGCCATCACAAACAACATAT
4422 TGAAAAATCAGGACGATCAGACGGTGGACGGTGACGGATCGGAGAAAACAAATCCGGACGGTTTT
66 TGAAAAATCAGGACGATCAGACGGTGGACGGTGACGGATCGGAGAAAACAAATCCGGACGGTTTT
4487 TAGCCTCTTGCCGGTG
131 TAGCCTCTTGCCGGTG
* * * *
4503 ATCGGAATCTGCGATCAATATTCCGAACGGTGAAAAGTTGCGCG-ATGCCAACACAAACAACCTA
1 ATCGGAATCTGCGATCAATATTCCGAACGGTCAAAAGTTGCG-GAAGGCCATCACAAACAACATA
* *
4567 TTGAAAAATCAGGACAATCGGACGGTGGA
65 TTGAAAAATCAGGACGATCAGACGGTGGA
4596 TGACGACAGA
Statistics
Matches: 218, Mismatches: 20, Indels: 2
0.91 0.08 0.01
Matches are distributed among these distances:
146 217 1.00
147 1 0.00
ACGTcount: A:0.32, C:0.21, G:0.25, T:0.21
Consensus pattern (146 bp):
ATCGGAATCTGCGATCAATATTCCGAACGGTCAAAAGTTGCGGAAGGCCATCACAAACAACATAT
TGAAAAATCAGGACGATCAGACGGTGGACGGTGACGGATCGGAGAAAACAAATCCGGACGGTTTT
TAGCCTCTTGCCGGTG
Found at i:4773 original size:16 final size:16
Alignment explanation
Indices: 4752--4789 Score: 76
Period size: 16 Copynumber: 2.4 Consensus size: 16
4742 CATTTTCCAT
4752 ATTTTACGCGTATTCA
1 ATTTTACGCGTATTCA
4768 ATTTTACGCGTATTCA
1 ATTTTACGCGTATTCA
4784 ATTTTA
1 ATTTTA
4790 GTCCTGAGTG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 22 1.00
ACGTcount: A:0.26, C:0.16, G:0.11, T:0.47
Consensus pattern (16 bp):
ATTTTACGCGTATTCA
Found at i:7205 original size:209 final size:212
Alignment explanation
Indices: 6848--7234 Score: 604
Period size: 209 Copynumber: 1.8 Consensus size: 212
6838 ATTTAAGAAT
* *
6848 TAAATTGAATAAATATGAAATTACAAATAAAAATTTAAATATATTAAACAACACACATTGATGAG
1 TAAATTGAACAAATATGAAATTACAAAAAAAAATTTAAATATATTAAACAACACACA-T-A-GAG
* * *
6913 GGATTAAATCGAAATAATTTTAAATTGTGATGTTGAAACTAATACAAAAAATACTAAATTATACC
63 GGATCAAATCAAAATAATTTTAAATTGTGAGGTTGAAACTAATACAAAAAATACTAAATTATACC
6978 CAATTAAAAAGTTATGGGCCAATTTAA-AAATAGAAATAAGTAATAAGTATGGGTCACTTTCAGG
128 CAATTAAAAAGTTATGGGCCAA-TTAATAAATAGAAATAAGTAATAAGTATGGGTCACTTTCAGG
7042 TGCAAATAAAATTTGGAGGAC
192 TGCAAATAAAATTTGGAGGAC
7063 TAAATTGAACAAATATGAAATTACAAAAAAAAATTT-AATATATTAAACAACACA-A-A-AGGGA
1 TAAATTGAACAAATATGAAATTACAAAAAAAAATTTAAATATATTAAACAACACACATAGAGGGA
* * * *
7124 TCAAATCAAAATAATTTTAAATTTTGAGGTTGAAATTAATACAAAAATGTACTAAATTATACTCA
66 TCAAATCAAAATAATTTTAAATTGTGAGGTTGAAACTAATACAAAAA-ATACTAAATTATACCCA
*
7189 TTTAAAAAGTTATGGGCCAATTAATAAATAGAAATAAGTAATAAGT
130 ATTAAAAAGTTATGGGCCAATTAATAAATAGAAATAAGTAATAAGT
7235 TGAGAAAAAA
Statistics
Matches: 160, Mismatches: 10, Indels: 10
0.89 0.06 0.06
Matches are distributed among these distances:
208 51 0.32
209 55 0.34
210 1 0.01
213 1 0.01
214 18 0.11
215 34 0.21
ACGTcount: A:0.50, C:0.08, G:0.12, T:0.29
Consensus pattern (212 bp):
TAAATTGAACAAATATGAAATTACAAAAAAAAATTTAAATATATTAAACAACACACATAGAGGGA
TCAAATCAAAATAATTTTAAATTGTGAGGTTGAAACTAATACAAAAAATACTAAATTATACCCAA
TTAAAAAGTTATGGGCCAATTAATAAATAGAAATAAGTAATAAGTATGGGTCACTTTCAGGTGCA
AATAAAATTTGGAGGAC
Found at i:7264 original size:2 final size:2
Alignment explanation
Indices: 7259--7367 Score: 89
Period size: 2 Copynumber: 54.0 Consensus size: 2
7249 AAAACAACTA
*
7259 AT AT AT AT AT AT AT A- AT AT AT AT AT AT AT AT AT AT AC AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
* * * * *
7300 AT AA ACT AT AT AG GT -T AT AT AT AA AGT AT AT GT AT -T AT AT AT
1 AT AT A-T AT AT AT AT AT AT AT AT AT A-T AT AT AT AT AT AT AT AT
* *
7342 AT AA ACT AT AT AGT TT AT AT AT AT AT
1 AT AT A-T AT AT A-T AT AT AT AT AT AT
7368 TATGTATAAA
Statistics
Matches: 85, Mismatches: 15, Indels: 14
0.75 0.13 0.12
Matches are distributed among these distances:
1 3 0.04
2 78 0.92
3 4 0.05
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.45
Consensus pattern (2 bp):
AT
Found at i:7301 original size:29 final size:29
Alignment explanation
Indices: 7259--7393 Score: 83
Period size: 29 Copynumber: 4.8 Consensus size: 29
7249 AAAACAACTA
*
7259 ATATATATATATATAATATATATATATAT
1 ATATATACATATATAATATATATATATAT
**
7288 ATATATACATATATAA-ACTATATAGGT-T
1 ATATATACATATATAATA-TATATATATAT
*
7316 ATATATA-A-AGTAT-ATGTAT-TATATAT
1 ATATATACATA-TATAATATATATATATAT
* *
7342 ATA-A-AC-TATATAGTTTATATATATATT
1 ATATATACATATATAATATATATATATA-T
* *
7369 ATGTATAAAGTATA-AACTATATATA
1 ATATATACA-TATATAA-TATATATA
7394 CCATGTATAA
Statistics
Matches: 80, Mismatches: 12, Indels: 26
0.68 0.10 0.22
Matches are distributed among these distances:
24 4 0.05
25 9 0.11
26 15 0.19
27 7 0.09
28 10 0.12
29 23 0.29
30 1 0.01
31 11 0.14
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.44
Consensus pattern (29 bp):
ATATATACATATATAATATATATATATAT
Found at i:7311 original size:42 final size:40
Alignment explanation
Indices: 7264--7393 Score: 119
Period size: 42 Copynumber: 3.2 Consensus size: 40
7254 AACTAATATA
7264 TATATATATAATATATATATATATATATATACATATATAAAC
1 TATATATAT-ATATATATATATATATATATA-ATATATAAAC
* *
7306 TATATAGGT-TATATATAAAGTATATGTAT-TATATATATAAAC
1 TATATA--TATATATATATA-TATATATATATA-ATATATAAAC
*
7348 TATATAGT-T-TATATATATAT-TATGTATAA-AGTATAAAC
1 TATATA-TATATATATATATATATATATATAATA-TATAAAC
7386 TATATATA
1 TATATATA
7394 CCATGTATAA
Statistics
Matches: 76, Mismatches: 6, Indels: 16
0.78 0.06 0.16
Matches are distributed among these distances:
37 2 0.03
38 17 0.22
39 5 0.07
40 7 0.09
41 3 0.04
42 32 0.42
43 9 0.12
44 1 0.01
ACGTcount: A:0.48, C:0.03, G:0.05, T:0.44
Consensus pattern (40 bp):
TATATATATATATATATATATATATATATAATATATAAAC
Found at i:7329 original size:11 final size:10
Alignment explanation
Indices: 7259--7353 Score: 59
Period size: 11 Copynumber: 9.3 Consensus size: 10
7249 AAAACAACTA
*
7259 ATATATATAT
1 ATATAAATAT
7269 ATATAATATAT
1 ATATAA-ATAT
*
7280 ATATATATAT
1 ATATAAATAT
*
7290 ATATACATAT
1 ATATAAATAT
*
7300 ATA-AACTAT
1 ATATAAATAT
***
7309 ATA-GGTTAT
1 ATATAAATAT
7318 ATATAAAGTAT
1 ATATAAA-TAT
* *
7329 ATGTATTATAT
1 ATATA-AATAT
7340 ATATAAACTAT
1 ATATAAA-TAT
7351 ATA
1 ATA
7354 GTTTATATAT
Statistics
Matches: 65, Mismatches: 15, Indels: 9
0.73 0.17 0.10
Matches are distributed among these distances:
9 13 0.20
10 22 0.34
11 29 0.45
12 1 0.02
ACGTcount: A:0.49, C:0.03, G:0.04, T:0.43
Consensus pattern (10 bp):
ATATAAATAT
Found at i:7375 original size:22 final size:24
Alignment explanation
Indices: 7315--7375 Score: 65
Period size: 22 Copynumber: 2.6 Consensus size: 24
7305 CTATATAGGT
*
7315 TATATATAAAGTATATGTATTATA
1 TATATATAATGTATATGTATTATA
*
7339 TATATA-AA-CTATATAGT-TTATA
1 TATATATAATGTATAT-GTATTATA
*
7361 TATATATTATGTATA
1 TATATATAATGTATA
7376 AAGTATAAAC
Statistics
Matches: 31, Mismatches: 3, Indels: 6
0.77 0.08 0.15
Matches are distributed among these distances:
22 16 0.52
23 5 0.16
24 10 0.32
ACGTcount: A:0.44, C:0.02, G:0.07, T:0.48
Consensus pattern (24 bp):
TATATATAATGTATATGTATTATA
Found at i:7537 original size:9 final size:9
Alignment explanation
Indices: 7493--7567 Score: 52
Period size: 9 Copynumber: 8.6 Consensus size: 9
7483 CTATACAATT
7493 TATATT-TA
1 TATATTATA
*
7501 TATATTATG
1 TATATTATA
7510 TATAATTATA
1 TAT-ATTATA
*
7520 -A-ATAATA
1 TATATTATA
*
7527 TATATTGTA
1 TATATTATA
*
7536 TAAATTATA
1 TATATTATA
7545 TAGT-TTATA
1 TA-TATTATA
7554 TATA-TAGTA
1 TATATTA-TA
7563 TATAT
1 TATAT
7568 GGTTTAGGGT
Statistics
Matches: 51, Mismatches: 8, Indels: 14
0.70 0.11 0.19
Matches are distributed among these distances:
7 5 0.10
8 10 0.20
9 31 0.61
10 5 0.10
ACGTcount: A:0.44, C:0.00, G:0.05, T:0.51
Consensus pattern (9 bp):
TATATTATA
Found at i:7559 original size:13 final size:13
Alignment explanation
Indices: 7524--7567 Score: 52
Period size: 13 Copynumber: 3.3 Consensus size: 13
7514 ATTATAAATA
*
7524 ATATATATTGTAT
1 ATATATATAGTAT
* *
7537 AAATTATATAGTTT
1 ATA-TATATAGTAT
7551 ATATATATAGTAT
1 ATATATATAGTAT
7564 ATAT
1 ATAT
7568 GGTTTAGGGT
Statistics
Matches: 25, Mismatches: 5, Indels: 2
0.78 0.16 0.06
Matches are distributed among these distances:
13 15 0.60
14 10 0.40
ACGTcount: A:0.43, C:0.00, G:0.07, T:0.50
Consensus pattern (13 bp):
ATATATATAGTAT
Found at i:7628 original size:20 final size:20
Alignment explanation
Indices: 7603--7669 Score: 62
Period size: 23 Copynumber: 3.1 Consensus size: 20
7593 TATAAACTAC
7603 ATACTATAATTTATATTTAT
1 ATACTATAATTTATATTTAT
*
7623 ATACTATATTTTATACTATTTAT
1 ATACTATA-ATT-TA-TATTTAT
* *
7646 ATAAACTATAGTTTATATATAT
1 AT--ACTATAATTTATATTTAT
7668 AT
1 AT
7670 GAACTATAGT
Statistics
Matches: 39, Mismatches: 3, Indels: 8
0.78 0.06 0.16
Matches are distributed among these distances:
20 8 0.21
21 2 0.05
22 10 0.26
23 11 0.28
24 2 0.05
25 6 0.15
ACGTcount: A:0.40, C:0.06, G:0.01, T:0.52
Consensus pattern (20 bp):
ATACTATAATTTATATTTAT
Found at i:7646 original size:23 final size:24
Alignment explanation
Indices: 7616--7682 Score: 79
Period size: 22 Copynumber: 2.9 Consensus size: 24
7606 CTATAATTTA
*
7616 TATTTATAT-ACTATATTTTATAC
1 TATTTATATAACTATAGTTTATAC
7639 TATTTATATAAACTATAGTTTATA-
1 TATTTATAT-AACTATAGTTTATAC
7663 TA--TATATGAACTATAGTTTA
1 TATTTATAT-AACTATAGTTTA
7683 CATATGAACT
Statistics
Matches: 40, Mismatches: 2, Indels: 5
0.85 0.04 0.11
Matches are distributed among these distances:
22 17 0.43
23 9 0.22
24 2 0.05
25 12 0.30
ACGTcount: A:0.39, C:0.06, G:0.04, T:0.51
Consensus pattern (24 bp):
TATTTATATAACTATAGTTTATAC
Found at i:7664 original size:18 final size:18
Alignment explanation
Indices: 7643--7786 Score: 55
Period size: 18 Copynumber: 7.7 Consensus size: 18
7633 TTATACTATT
7643 TATATAAACTATAGTTTATA
1 TATATAAACTATAG-TT-TA
7663 TATATATGAACTATAGTTTA
1 TATATA--AACTATAGTTTA
* *
7683 CATATGAACTATA---TA
1 TATATAAACTATAGTTTA
**
7698 TATACTAAGGTTGATA-TTTA
1 TATA-TAA-ACT-ATAGTTTA
* *
7718 TATATGAACTATAGTTTT
1 TATATAAACTATAGTTTA
**
7736 TATACTAAGGTTGATA-TTTA
1 TATA-TAA-ACT-ATAGTTTA
* *
7756 CATATGAACTATAGTTTA
1 TATATAAACTATAGTTTA
* *
7774 CATATGAACTATA
1 TATATAAACTATA
7787 TATATAAACT
Statistics
Matches: 94, Mismatches: 18, Indels: 26
0.68 0.13 0.19
Matches are distributed among these distances:
15 5 0.05
16 2 0.02
17 7 0.07
18 36 0.38
19 6 0.06
20 25 0.27
21 5 0.05
22 8 0.09
ACGTcount: A:0.40, C:0.08, G:0.10, T:0.42
Consensus pattern (18 bp):
TATATAAACTATAGTTTA
Found at i:7674 original size:22 final size:21
Alignment explanation
Indices: 7605--7687 Score: 78
Period size: 22 Copynumber: 3.8 Consensus size: 21
7595 TAAACTACAT
* *
7605 ACTATAATTTATATTTATAT-
1 ACTATAGTTTATATATATATA
*
7625 ACTATATTTTATACTATTTATATAA
1 ACTATAGTTTATA-TA--TATAT-A
7650 ACTATAGTTTATATATATATGA
1 ACTATAGTTTATATATATAT-A
*
7672 ACTATAGTTTACATAT
1 ACTATAGTTTATATAT
7688 GAACTATATA
Statistics
Matches: 53, Mismatches: 5, Indels: 8
0.80 0.08 0.12
Matches are distributed among these distances:
20 12 0.23
21 1 0.02
22 21 0.40
23 5 0.09
24 2 0.04
25 12 0.23
ACGTcount: A:0.40, C:0.07, G:0.04, T:0.49
Consensus pattern (21 bp):
ACTATAGTTTATATATATATA
Found at i:7721 original size:20 final size:20
Alignment explanation
Indices: 7696--7755 Score: 56
Period size: 20 Copynumber: 3.1 Consensus size: 20
7686 ATGAACTATA
7696 TATATACTAAGGTTGATATT
1 TATATACTAAGGTTGATATT
*
7716 TATATA-TGAA--CT-ATAGTT
1 TATATACT-AAGGTTGATA-TT
*
7734 TTTATACTAAGGTTGATATT
1 TATATACTAAGGTTGATATT
7754 TA
1 TA
7756 CATATGAACT
Statistics
Matches: 30, Mismatches: 4, Indels: 12
0.65 0.09 0.26
Matches are distributed among these distances:
17 3 0.10
18 10 0.33
19 2 0.07
20 12 0.40
21 3 0.10
ACGTcount: A:0.35, C:0.05, G:0.13, T:0.47
Consensus pattern (20 bp):
TATATACTAAGGTTGATATT
Found at i:7747 original size:38 final size:38
Alignment explanation
Indices: 7679--7772 Score: 149
Period size: 38 Copynumber: 2.6 Consensus size: 38
7669 TGAACTATAG
*
7679 TTTACATATGAACTATA---TATATACTAAGGTTGATA
1 TTTACATATGAACTATAGTTTTTATACTAAGGTTGATA
*
7714 TTTATATATGAACTATAGTTTTTATACTAAGGTTGATA
1 TTTACATATGAACTATAGTTTTTATACTAAGGTTGATA
7752 TTTACATATGAACTATAGTTT
1 TTTACATATGAACTATAGTTT
7773 ACATATGAAC
Statistics
Matches: 53, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
35 16 0.30
38 37 0.70
ACGTcount: A:0.36, C:0.07, G:0.12, T:0.45
Consensus pattern (38 bp):
TTTACATATGAACTATAGTTTTTATACTAAGGTTGATA
Found at i:7797 original size:31 final size:32
Alignment explanation
Indices: 7757--7825 Score: 113
Period size: 33 Copynumber: 2.2 Consensus size: 32
7747 TGATATTTAC
*
7757 ATATGAAC-TATAGTTTACATATGAACTATAT
1 ATATAAACATATAGTTTACATATGAACTATAT
7788 ATATAAACTATATAGTTTACATATGAACTATAT
1 ATATAAAC-ATATAGTTTACATATGAACTATAT
7821 ATATA
1 ATATA
7826 GTTTATTAGT
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
31 7 0.20
33 28 0.80
ACGTcount: A:0.45, C:0.09, G:0.07, T:0.39
Consensus pattern (32 bp):
ATATAAACATATAGTTTACATATGAACTATAT
Found at i:7854 original size:24 final size:25
Alignment explanation
Indices: 7799--7860 Score: 76
Period size: 24 Copynumber: 2.6 Consensus size: 25
7789 TATAAACTAT
* *
7799 ATAGTTTACATA-TGAACTATATAT
1 ATAGTTTATATAGTGAACTATATAC
7823 ATAGTTTAT-TAGTGAACTATATAC
1 ATAGTTTATATAGTGAACTATATAC
7847 ACTA-TTTATATAGT
1 A-TAGTTTATATAGT
7861 ATATACTCTA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
23 2 0.06
24 25 0.76
25 6 0.18
ACGTcount: A:0.39, C:0.08, G:0.10, T:0.44
Consensus pattern (25 bp):
ATAGTTTATATAGTGAACTATATAC
Found at i:7883 original size:20 final size:20
Alignment explanation
Indices: 7837--7883 Score: 58
Period size: 20 Copynumber: 2.4 Consensus size: 20
7827 TTTATTAGTG
*
7837 AACTATATACACTATTTATA
1 AACTATATACACTATATATA
* * *
7857 TAGTATATACTCTATATATA
1 AACTATATACACTATATATA
7877 AACTATA
1 AACTATA
7884 GTTTATATTT
Statistics
Matches: 21, Mismatches: 6, Indels: 0
0.78 0.22 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.45, C:0.13, G:0.02, T:0.40
Consensus pattern (20 bp):
AACTATATACACTATATATA
Found at i:7890 original size:27 final size:27
Alignment explanation
Indices: 7878--7937 Score: 102
Period size: 27 Copynumber: 2.2 Consensus size: 27
7868 CTATATATAA
7878 ACTATAGTTTATATTTATATACTACAT
1 ACTATAGTTTATATTTATATACTACAT
*
7905 ACTATAGTTTATATTTATATACTATAT
1 ACTATAGTTTATATTTATATACTACAT
*
7932 ATTATA
1 ACTATA
7938 TATATGAACT
Statistics
Matches: 31, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
27 31 1.00
ACGTcount: A:0.38, C:0.08, G:0.03, T:0.50
Consensus pattern (27 bp):
ACTATAGTTTATATTTATATACTACAT
Found at i:7896 original size:20 final size:20
Alignment explanation
Indices: 7873--7950 Score: 50
Period size: 20 Copynumber: 3.5 Consensus size: 20
7863 ATACTCTATA
7873 TATAAACTATAGTTTATATTTAT
1 TATAAACTATAGTTTATA--T-T
7896 ATACTACATACTATAGTTTATATT
1 -TA-TA-A-ACTATAGTTTATATT
* *
7920 TATATACTATA-TATTATATA
1 TATAAACTATAGT-TTATATT
*
7940 TATGAACTATA
1 TATAAACTATA
7951 TATACCATAT
Statistics
Matches: 46, Mismatches: 4, Indels: 12
0.74 0.06 0.19
Matches are distributed among these distances:
19 1 0.02
20 21 0.46
22 2 0.04
23 2 0.04
24 3 0.07
25 3 0.07
26 1 0.02
27 13 0.28
ACGTcount: A:0.41, C:0.08, G:0.04, T:0.47
Consensus pattern (20 bp):
TATAAACTATAGTTTATATT
Found at i:7951 original size:33 final size:33
Alignment explanation
Indices: 7775--7985 Score: 86
Period size: 33 Copynumber: 6.4 Consensus size: 33
7765 TATAGTTTAC
* * *
7775 ATATGAACTATATATATAAACTATATAGTT-TAC
1 ATATGAACTATATTTATATACTATATA-TTATAT
*
7808 ATATGAACTATA--TATATAGT-T-TATTAGTGA-
1 ATATGAACTATATTTATATACTATATATTA-T-AT
* * *
7838 ACTAT-ATAC-ACTATTTATATAGTATATACTCTAT
1 A-TATGA-ACTA-TATTTATATACTATATATTATAT
* * * *
7872 ATATAAACTATAGTTTATAT-TTATATACTACAT
1 ATATGAACTATA-TTTATATACTATATATTATAT
**
7905 ACTAT-AGTTTATATTTATATACTATATATTATAT
1 A-TATGA-ACTATATTTATATACTATATATTATAT
* * *
7939 ATATGAACTATATATACCATA-TAGTATAATT-TAC
1 ATATGAACTATATTTA-TATACTA-TAT-ATTATAT
7973 ATATGAACTATAT
1 ATATGAACTATAT
7986 ATAAAAATAC
Statistics
Matches: 140, Mismatches: 17, Indels: 41
0.71 0.09 0.21
Matches are distributed among these distances:
28 2 0.01
29 2 0.01
30 5 0.04
31 14 0.10
33 59 0.42
34 52 0.37
35 6 0.04
ACGTcount: A:0.42, C:0.09, G:0.06, T:0.44
Consensus pattern (33 bp):
ATATGAACTATATTTATATACTATATATTATAT
Found at i:8049 original size:33 final size:33
Alignment explanation
Indices: 8010--8241 Score: 197
Period size: 33 Copynumber: 7.2 Consensus size: 33
8000 CCCTAAACCC
* *
8010 TAAACTATACATTATATAGTTTATTGGTATATA
1 TAAACTATACATTATATAGTTCATTAGTATATA
* * *
8043 TAAACTATATGATATATATAG-ACTATATGGTATATA
1 TAAACTATA-CAT-TATATAGTTC-AT-TAGTATATA
8079 TAAACTATACATTATATATAGTTCATTAGTATATA
1 TAAACTATACA-T-TATATAGTTCATTAGTATATA
*
8114 T--ACTATAC--TATATAGTTCATTAGTATGTA
1 TAAACTATACATTATATAGTTCATTAGTATATA
*
8143 TAAACTATATATTATATAGTTCATTAGTATATA
1 TAAACTATACATTATATAGTTCATTAGTATATA
*
8176 T-AAC----C--TATATAGTAT-ATGA-TATATA
1 TAAACTATACATTATATAGT-TCATTAGTATATA
* *
8201 CAAACTATATATTATATAGTTCATTAG-AGTATA
1 TAAACTATACATTATATAGTTCATTAGTA-TATA
8234 TAAACTAT
1 TAAACTAT
8242 GTAGTATATA
Statistics
Matches: 163, Mismatches: 15, Indels: 42
0.74 0.07 0.19
Matches are distributed among these distances:
25 6 0.04
26 14 0.09
27 1 0.01
29 21 0.13
31 7 0.04
32 15 0.09
33 48 0.29
34 2 0.01
35 19 0.12
36 29 0.18
37 1 0.01
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (33 bp):
TAAACTATACATTATATAGTTCATTAGTATATA
Found at i:8060 original size:18 final size:18
Alignment explanation
Indices: 8037--8087 Score: 84
Period size: 18 Copynumber: 2.8 Consensus size: 18
8027 AGTTTATTGG
8037 TATATATAAACTATATGA
1 TATATATAAACTATATGA
* *
8055 TATATATAGACTATATGG
1 TATATATAAACTATATGA
8073 TATATATAAACTATA
1 TATATATAAACTATA
8088 CATTATATAT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 30 1.00
ACGTcount: A:0.47, C:0.06, G:0.08, T:0.39
Consensus pattern (18 bp):
TATATATAAACTATATGA
Found at i:8094 original size:18 final size:17
Alignment explanation
Indices: 8037--8098 Score: 61
Period size: 18 Copynumber: 3.5 Consensus size: 17
8027 AGTTTATTGG
*
8037 TATATATAAACTATATGA
1 TATATATAAACTATA-CA
* **
8055 TATATATAGACTATATGG
1 TATATATAAACTATA-CA
8073 TATATATAAACTATACA
1 TATATATAAACTATACA
8090 TTATATATA
1 -TATATATA
8099 GTTCATTAGT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
18 38 1.00
ACGTcount: A:0.47, C:0.06, G:0.06, T:0.40
Consensus pattern (17 bp):
TATATATAAACTATACA
Found at i:8095 original size:36 final size:34
Alignment explanation
Indices: 8010--8127 Score: 120
Period size: 36 Copynumber: 3.5 Consensus size: 34
8000 CCCTAAACCC
**
8010 TAAACTATACAT-TATATAGTTTATTGGTATATA
1 TAAACTATACATATATATAGACTATTGGTATATA
*
8043 TAAACTATATGATATATATAGACTATATGGTATATA
1 TAAACTATA-CATATATATAGACTAT-TGGTATATA
* *
8079 TAAACTATACATTATATATAG-TTCATTAGTATATA
1 TAAACTATACA-TATATATAGACT-ATTGGTATATA
8114 T--ACTATAC-TATATA
1 TAAACTATACATATATA
8128 GTTCATTAGT
Statistics
Matches: 74, Mismatches: 6, Indels: 12
0.80 0.07 0.13
Matches are distributed among these distances:
31 6 0.08
33 16 0.22
34 2 0.03
35 21 0.28
36 29 0.39
ACGTcount: A:0.42, C:0.08, G:0.08, T:0.42
Consensus pattern (34 bp):
TAAACTATACATATATATAGACTATTGGTATATA
Found at i:8190 original size:51 final size:51
Alignment explanation
Indices: 8134--8269 Score: 157
Period size: 58 Copynumber: 2.5 Consensus size: 51
8124 TATAGTTCAT
*
8134 TAGTATGTATAAACTATATATTATATAGTTCATTAGTA-TATATAACCTATA
1 TAGTATGTATAAACTATATATTATATAGTTCATTAG-AGTATATAAACTATA
*
8185 TAGTATATGATATATACAAACTATATATTATATAGTTCATTAGAGTATATAAACTATG
1 TAG--TATG---TAT--AAACTATATATTATATAGTTCATTAGAGTATATAAACTATA
* *
8243 TAGTATATATAAACTATATAGTATATA
1 TAGTATGTATAAACTATATATTATATA
8270 TAAACTATAT
Statistics
Matches: 73, Mismatches: 4, Indels: 16
0.78 0.04 0.17
Matches are distributed among these distances:
51 19 0.26
53 7 0.10
56 6 0.08
57 1 0.01
58 40 0.55
ACGTcount: A:0.43, C:0.07, G:0.09, T:0.41
Consensus pattern (51 bp):
TAGTATGTATAAACTATATATTATATAGTTCATTAGAGTATATAAACTATA
Found at i:8208 original size:25 final size:25
Alignment explanation
Indices: 8170--8217 Score: 69
Period size: 25 Copynumber: 1.9 Consensus size: 25
8160 AGTTCATTAG
* *
8170 TATATATAACCTATATAGTATATGA
1 TATATACAAACTATATAGTATATGA
*
8195 TATATACAAACTATATATTATAT
1 TATATACAAACTATATAGTATAT
8218 AGTTCATTAG
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
25 20 1.00
ACGTcount: A:0.46, C:0.08, G:0.04, T:0.42
Consensus pattern (25 bp):
TATATACAAACTATATAGTATATGA
Found at i:8224 original size:58 final size:58
Alignment explanation
Indices: 8057--8250 Score: 221
Period size: 58 Copynumber: 3.2 Consensus size: 58
8047 CTATATGATA
* *
8057 TATATAGACTATATGGTATATATAAACTATACATTATATATAGTTCATTAGTATATATACTATAC
1 TATATAG--TATATGATATATATAAACTATATA-T-TATATAGTTCATTAGTATATATA--A-AC
* * *
8122 TATATAGT-TCATTAGTATGTATAAACTATATATTATATAGTTCATTAGTATATATAACC
1 TATATAGTAT-ATGA-TATATATAAACTATATATTATATAGTTCATTAGTATATATAAAC
*
8181 TATATAGTATATGATATATACAAACTATATATTATATAGTTCATTAG-AGTATATAAAC
1 TATATAGTATATGATATATATAAACTATATATTATATAGTTCATTAGTA-TATATAAAC
*
8239 TATGTAGTATAT
1 TATATAGTATAT
8251 ATAAACTATA
Statistics
Matches: 115, Mismatches: 10, Indels: 15
0.82 0.07 0.11
Matches are distributed among these distances:
57 1 0.01
58 50 0.43
59 12 0.10
60 2 0.02
62 24 0.21
63 4 0.03
64 15 0.13
65 7 0.06
ACGTcount: A:0.41, C:0.08, G:0.09, T:0.42
Consensus pattern (58 bp):
TATATAGTATATGATATATATAAACTATATATTATATAGTTCATTAGTATATATAAAC
Found at i:8253 original size:18 final size:18
Alignment explanation
Indices: 8230--8280 Score: 93
Period size: 18 Copynumber: 2.8 Consensus size: 18
8220 TTCATTAGAG
*
8230 TATATAAACTATGTAGTA
1 TATATAAACTATATAGTA
8248 TATATAAACTATATAGTA
1 TATATAAACTATATAGTA
8266 TATATAAACTATATA
1 TATATAAACTATATA
8281 TTAATTTATT
Statistics
Matches: 32, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
18 32 1.00
ACGTcount: A:0.49, C:0.06, G:0.06, T:0.39
Consensus pattern (18 bp):
TATATAAACTATATAGTA
Found at i:8501 original size:21 final size:21
Alignment explanation
Indices: 8449--8501 Score: 70
Period size: 21 Copynumber: 2.5 Consensus size: 21
8439 TAGTGTACTA
* *
8449 TATAGTTTATACTTTATAACC
1 TATAGTTTATAATTTATAAAC
* *
8470 TATAATATATAATTTATAAAC
1 TATAGTTTATAATTTATAAAC
8491 TATAGTTTATA
1 TATAGTTTATA
8502 TTAATGTACT
Statistics
Matches: 26, Mismatches: 6, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.42, C:0.08, G:0.04, T:0.47
Consensus pattern (21 bp):
TATAGTTTATAATTTATAAAC
Found at i:8538 original size:22 final size:22
Alignment explanation
Indices: 8491--8539 Score: 71
Period size: 22 Copynumber: 2.1 Consensus size: 22
8481 ATTTATAAAC
*
8491 TATAGTTTATATTAATGTACTA
1 TATAGTTTATATTAATGTAATA
8513 TATAGTTTATATTAATGTTAATTA
1 TATAGTTTATATTAATG-TAA-TA
8537 TAT
1 TAT
8540 TAACTATAAT
Statistics
Matches: 24, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
22 17 0.71
23 2 0.08
24 5 0.21
ACGTcount: A:0.37, C:0.02, G:0.08, T:0.53
Consensus pattern (22 bp):
TATAGTTTATATTAATGTAATA
Found at i:8554 original size:31 final size:31
Alignment explanation
Indices: 8513--8798 Score: 164
Period size: 31 Copynumber: 8.8 Consensus size: 31
8503 TAATGTACTA
* *
8513 TATAGTTTATATTAATGTTAATTATATTAAC
1 TATAATTTATATTAATATTAATTATATTAAC
8544 TATAATTTATATTAATATAGTATATTATTTATATAA-
1 TATAATTTATATTAATAT--TA-ATTA--TAT-TAAC
*
8580 TATACTATACTATATTAATATTAATTATATTAAC
1 TATA--AT-TTATATTAATATTAATTATATTAAC
* *
8614 TATAGTTTATAAACTATACTATATAATT-TA-TAAC
1 TATAATTTAT--A-T-TAATAT-TAATTATATTAAC
* * *
8648 ATATAGTTTATATTAATATTAACTT-TATAAAT
1 -TATAATTTATATTAATATTAA-TTATATTAAC
* *
8680 TATATTTTATATTAATATTAATTACAAATTATAAAC
1 TATAATTTATATTAATATTAATT----A-TATTAAC
8716 TAT-A-TTATATTAATA-TAAGTTAATATTAA-
1 TATAATTTATATTAATATTAA-TT-ATATTAAC
*
8745 TATTAA-TTATATTAATATTAATTATAAT-A-
1 TA-TAATTTATATTAATATTAATTATATTAAC
*
8774 TATAA-TTATTTTAATATTAATTATA
1 TATAATTTATATTAATATTAATTATA
8799 AATAATTTAT
Statistics
Matches: 212, Mismatches: 15, Indels: 59
0.74 0.05 0.21
Matches are distributed among these distances:
28 22 0.10
29 5 0.02
30 15 0.07
31 64 0.30
32 7 0.03
33 10 0.05
34 29 0.14
35 17 0.08
36 25 0.12
37 5 0.02
38 2 0.01
39 11 0.05
ACGTcount: A:0.45, C:0.03, G:0.02, T:0.50
Consensus pattern (31 bp):
TATAATTTATATTAATATTAATTATATTAAC
Found at i:8572 original size:16 final size:16
Alignment explanation
Indices: 8537--8583 Score: 51
Period size: 16 Copynumber: 2.9 Consensus size: 16
8527 ATGTTAATTA
*
8537 TATTAACTATAATTTA-
1 TATTAA-TATAATATAT
*
8553 TATTAATATAGTATAT
1 TATTAATATAATATAT
*
8569 TATTTATATAATATA
1 TATTAATATAATATA
8584 CTATACTATA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
15 7 0.27
16 19 0.73
ACGTcount: A:0.45, C:0.02, G:0.02, T:0.51
Consensus pattern (16 bp):
TATTAATATAATATAT
Found at i:8582 original size:21 final size:22
Alignment explanation
Indices: 8548--8604 Score: 71
Period size: 21 Copynumber: 2.5 Consensus size: 22
8538 ATTAACTATA
*
8548 ATTTATATTAATATAGTATATT
1 ATTTATATTAATATACTATATT
8570 ATTTATA-TAATATACTATACTAT
1 ATTTATATTAATATACTATA-T-T
*
8593 ATTAATATTAAT
1 ATTTATATTAAT
8605 TATATTAACT
Statistics
Matches: 30, Mismatches: 2, Indels: 4
0.83 0.06 0.11
Matches are distributed among these distances:
21 11 0.37
22 8 0.27
23 7 0.23
24 4 0.13
ACGTcount: A:0.44, C:0.04, G:0.02, T:0.51
Consensus pattern (22 bp):
ATTTATATTAATATACTATATT
Found at i:8744 original size:6 final size:6
Alignment explanation
Indices: 8717--8794 Score: 53
Period size: 6 Copynumber: 13.3 Consensus size: 6
8707 ATTATAAACT
*
8717 ATATT- ATATTA ATA-TA A-GTTA ATATTA ATATT- A-ATT- ATATTA
1 ATATTA ATATTA ATATTA ATATTA ATATTA ATATTA ATATTA ATATTA
8759 ATATTA AT-TATA ATATATA ATTATTTTA ATATTA AT
1 ATATTA ATAT-TA ATAT-TA A-TA--TTA ATATTA AT
8795 TATAAATAAT
Statistics
Matches: 61, Mismatches: 2, Indels: 19
0.74 0.02 0.23
Matches are distributed among these distances:
4 4 0.07
5 16 0.26
6 28 0.46
7 5 0.08
8 4 0.07
9 3 0.05
10 1 0.02
ACGTcount: A:0.47, C:0.00, G:0.01, T:0.51
Consensus pattern (6 bp):
ATATTA
Found at i:8787 original size:28 final size:27
Alignment explanation
Indices: 8742--8819 Score: 108
Period size: 28 Copynumber: 3.0 Consensus size: 27
8732 AAGTTAATAT
8742 TAATATTAATTATATTAATATTAATTA
1 TAATATTAATTATATTAATATTAATTA
*
8769 TAATATATAATTATTTTAATATTAATTA
1 TAATAT-TAATTATATTAATATTAATTA
*
8797 TAA-A-TAATT-TATTAATATAAATT
1 TAATATTAATTATATTAATATTAATT
8820 TTATAGGGAT
Statistics
Matches: 47, Mismatches: 3, Indels: 5
0.85 0.05 0.09
Matches are distributed among these distances:
24 12 0.26
25 5 0.11
27 7 0.15
28 23 0.49
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (27 bp):
TAATATTAATTATATTAATATTAATTA
Found at i:8807 original size:21 final size:22
Alignment explanation
Indices: 8686--8819 Score: 102
Period size: 21 Copynumber: 6.1 Consensus size: 22
8676 AAATTATATT
**
8686 TTAT-ATTAATATTAATTACAAA
1 TTATAATTAATATTAA-TATTAA
*
8708 TTATAAACT-ATATT-ATATTAA
1 TTAT-AATTAATATTAATATTAA
8729 -TATAAGTTAATATTAATATTAA
1 TTATAA-TTAATATTAATATTAA
8751 TTAT-ATTAATATTAAT-TATAA
1 TTATAATTAATATTAATAT-TAA
*
8772 TATATAATT-ATTTTAATATTAA
1 T-TATAATTAATATTAATATTAA
* *
8794 TTATAAATAATTTATTAATATAAA
1 TTATAATTAA--TATTAATATTAA
8818 TT
1 TT
8820 TTATAGGGAT
Statistics
Matches: 91, Mismatches: 8, Indels: 24
0.74 0.07 0.20
Matches are distributed among these distances:
19 2 0.02
20 5 0.05
21 30 0.33
22 28 0.31
23 12 0.13
24 14 0.15
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.49
Consensus pattern (22 bp):
TTATAATTAATATTAATATTAA
Found at i:10999 original size:23 final size:23
Alignment explanation
Indices: 10964--11018 Score: 65
Period size: 23 Copynumber: 2.4 Consensus size: 23
10954 CTTAATGCAG
* * *
10964 GATGTTTGCTGAATTGATGCAAT
1 GATGCTTGTTGAATTGATACAAT
* *
10987 GATGCTTGTTGAATTGGTACATT
1 GATGCTTGTTGAATTGATACAAT
11010 GATGCTTGT
1 GATGCTTGT
11019 CGGTTGTTGT
Statistics
Matches: 27, Mismatches: 5, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 27 1.00
ACGTcount: A:0.22, C:0.09, G:0.27, T:0.42
Consensus pattern (23 bp):
GATGCTTGTTGAATTGATACAAT
Found at i:11650 original size:14 final size:14
Alignment explanation
Indices: 11626--11664 Score: 53
Period size: 14 Copynumber: 2.7 Consensus size: 14
11616 ATATAAAAAT
11626 CAAATTTATAATATA
1 CAAA-TTATAATATA
11641 CAAATTATAATATA
1 CAAATTATAATATA
11655 -AGAATTATAA
1 CA-AATTATAA
11665 AAAATATAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
13 1 0.04
14 18 0.78
15 4 0.17
ACGTcount: A:0.56, C:0.05, G:0.03, T:0.36
Consensus pattern (14 bp):
CAAATTATAATATA
Found at i:11678 original size:19 final size:19
Alignment explanation
Indices: 11649--11693 Score: 56
Period size: 19 Copynumber: 2.4 Consensus size: 19
11639 TACAAATTAT
11649 AATAT-AAGAATTATAAAA
1 AATATAAAGAATTATAAAA
* **
11667 AATATAAAGAATTGTAATT
1 AATATAAAGAATTATAAAA
11686 AATATAAA
1 AATATAAA
11694 AGCTAAATTT
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
18 5 0.22
19 18 0.78
ACGTcount: A:0.62, C:0.00, G:0.07, T:0.31
Consensus pattern (19 bp):
AATATAAAGAATTATAAAA
Found at i:12953 original size:19 final size:19
Alignment explanation
Indices: 12929--12967 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
12919 AAAATCTGTT
12929 TTCG-CCCTCTAAAATTTTA
1 TTCGCCCCT-TAAAATTTTA
*
12948 TTCGCCCCTTGAAATTTTA
1 TTCGCCCCTTAAAATTTTA
12967 T
1 T
12968 AAGTTCAAGT
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
19 14 0.78
20 4 0.22
ACGTcount: A:0.23, C:0.26, G:0.08, T:0.44
Consensus pattern (19 bp):
TTCGCCCCTTAAAATTTTA
Found at i:14109 original size:20 final size:20
Alignment explanation
Indices: 14084--14122 Score: 62
Period size: 20 Copynumber: 1.9 Consensus size: 20
14074 TAGCTGTGCA
14084 TATATTT-TCTTTTTATTTCG
1 TATATTTGTCTTTTT-TTTCG
14104 TATATTTGTCTTTTTTTTC
1 TATATTTGTCTTTTTTTTC
14123 TTCTTTTAAA
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
20 11 0.61
21 7 0.39
ACGTcount: A:0.13, C:0.10, G:0.05, T:0.72
Consensus pattern (20 bp):
TATATTTGTCTTTTTTTTCG
Found at i:14185 original size:23 final size:21
Alignment explanation
Indices: 14155--14202 Score: 53
Period size: 22 Copynumber: 2.2 Consensus size: 21
14145 ATGACACGGA
14155 TTTTTCTGCTTTTATAGCAC-TT
1 TTTTTCTG-TTTT-TAGCACATT
*
14177 TTTTCTCTGTTTTTGGCACATT
1 TTTT-TCTGTTTTTAGCACATT
14199 TTTT
1 TTTT
14203 ATTTTCTTAC
Statistics
Matches: 23, Mismatches: 1, Indels: 4
0.82 0.04 0.14
Matches are distributed among these distances:
21 5 0.22
22 14 0.61
23 4 0.17
ACGTcount: A:0.10, C:0.17, G:0.10, T:0.62
Consensus pattern (21 bp):
TTTTTCTGTTTTTAGCACATT
Found at i:17450 original size:21 final size:21
Alignment explanation
Indices: 17432--17476 Score: 90
Period size: 21 Copynumber: 2.1 Consensus size: 21
17422 TATTTTATAT
17432 AAATAAATATGATGCTTATGA
1 AAATAAATATGATGCTTATGA
17453 AAATAAATATGATGCTTATGA
1 AAATAAATATGATGCTTATGA
17474 AAA
1 AAA
17477 ATAGATCTCA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 24 1.00
ACGTcount: A:0.51, C:0.04, G:0.13, T:0.31
Consensus pattern (21 bp):
AAATAAATATGATGCTTATGA
Found at i:21470 original size:25 final size:25
Alignment explanation
Indices: 21422--21488 Score: 86
Period size: 25 Copynumber: 2.7 Consensus size: 25
21412 GAAAATAAAA
21422 ATAAAATAT-TTTAAGTTAAGTTAAT
1 ATAAAATATATTTAAG-TAAGTTAAT
21447 AGTAAAATATATTTAA-TAAGTTAAT
1 A-TAAAATATATTTAAGTAAGTTAAT
21472 ATAAAA-ATATTTTAAGT
1 ATAAAATATA-TTTAAGT
21489 CAATATATAT
Statistics
Matches: 38, Mismatches: 0, Indels: 8
0.83 0.00 0.17
Matches are distributed among these distances:
23 3 0.08
24 10 0.26
25 12 0.32
26 8 0.21
27 5 0.13
ACGTcount: A:0.51, C:0.00, G:0.07, T:0.42
Consensus pattern (25 bp):
ATAAAATATATTTAAGTAAGTTAAT
Found at i:21787 original size:39 final size:39
Alignment explanation
Indices: 21744--21819 Score: 111
Period size: 39 Copynumber: 1.9 Consensus size: 39
21734 TATTTTAAAA
21744 AATAATTTAGAAAATTAAT-GTG-AAATAATTTAAGAAATT
1 AATAATTTAGAAAATT-ATGGTGTAAA-AATTTAAGAAATT
*
21783 AATAATTTAGAAAGTTATGGTGTAAAAATTTAAGAAA
1 AATAATTTAGAAAATTATGGTGTAAAAATTTAAGAAA
21820 AATTTAATAA
Statistics
Matches: 34, Mismatches: 1, Indels: 4
0.87 0.03 0.10
Matches are distributed among these distances:
38 2 0.06
39 29 0.85
40 3 0.09
ACGTcount: A:0.53, C:0.00, G:0.13, T:0.34
Consensus pattern (39 bp):
AATAATTTAGAAAATTATGGTGTAAAAATTTAAGAAATT
Found at i:22329 original size:31 final size:31
Alignment explanation
Indices: 22258--22330 Score: 74
Period size: 31 Copynumber: 2.4 Consensus size: 31
22248 ACTCGGGGTA
* * *
22258 ACCACATCTAAATTAAATAAAAACGAAAGTT
1 ACCAAATCTTAATTAAATAAAAACGAAAGTG
* * * * *
22289 ATCATATCTTAATTAACTAAAAATGTAAGTG
1 ACCAAATCTTAATTAAATAAAAACGAAAGTG
22320 ACCAAATCTTA
1 ACCAAATCTTA
22331 TGTATTTTAA
Statistics
Matches: 33, Mismatches: 9, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
31 33 1.00
ACGTcount: A:0.49, C:0.15, G:0.07, T:0.29
Consensus pattern (31 bp):
ACCAAATCTTAATTAAATAAAAACGAAAGTG
Found at i:22484 original size:13 final size:13
Alignment explanation
Indices: 22466--22497 Score: 64
Period size: 13 Copynumber: 2.5 Consensus size: 13
22456 CGTAGGATAG
22466 GCGCAATTATAAC
1 GCGCAATTATAAC
22479 GCGCAATTATAAC
1 GCGCAATTATAAC
22492 GCGCAA
1 GCGCAA
22498 AACGCAAGAA
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 19 1.00
ACGTcount: A:0.38, C:0.25, G:0.19, T:0.19
Consensus pattern (13 bp):
GCGCAATTATAAC
Found at i:23143 original size:33 final size:33
Alignment explanation
Indices: 23101--23164 Score: 128
Period size: 33 Copynumber: 1.9 Consensus size: 33
23091 GCCGTGGAAA
23101 TGGAATGCGAGCAGCTTCGGAAGAAAACTAATT
1 TGGAATGCGAGCAGCTTCGGAAGAAAACTAATT
23134 TGGAATGCGAGCAGCTTCGGAAGAAAACTAA
1 TGGAATGCGAGCAGCTTCGGAAGAAAACTAA
23165 CATGATAATG
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.38, C:0.16, G:0.28, T:0.19
Consensus pattern (33 bp):
TGGAATGCGAGCAGCTTCGGAAGAAAACTAATT
Found at i:25613 original size:48 final size:48
Alignment explanation
Indices: 25558--25654 Score: 151
Period size: 48 Copynumber: 2.0 Consensus size: 48
25548 GTTCGGTTCA
*
25558 GGTCATTTTA-GGTTTCGGTTTTATTCGGGTCTATAGTAAGTCGGGTCG
1 GGTCA-TTTAGGGTTTCGGTTTTATTCGGGCCTATAGTAAGTCGGGTCG
* *
25606 GGTCATTTAGGGTTTTGGTTTTATTCGTGCCTATAGTAAGTCGGGTCG
1 GGTCATTTAGGGTTTCGGTTTTATTCGGGCCTATAGTAAGTCGGGTCG
25654 G
1 G
25655 TTCAGGTAAC
Statistics
Matches: 45, Mismatches: 3, Indels: 2
0.90 0.06 0.04
Matches are distributed among these distances:
47 4 0.09
48 41 0.91
ACGTcount: A:0.14, C:0.12, G:0.32, T:0.41
Consensus pattern (48 bp):
GGTCATTTAGGGTTTCGGTTTTATTCGGGCCTATAGTAAGTCGGGTCG
Found at i:25899 original size:16 final size:16
Alignment explanation
Indices: 25878--25924 Score: 60
Period size: 16 Copynumber: 3.0 Consensus size: 16
25868 GTAAATTTAA
25878 TTTGGGTTAATTTCGG
1 TTTGGGTTAATTTCGG
* *
25894 TTTGGGTTACTTTCAG
1 TTTGGGTTAATTTCGG
*
25910 TTT-GGTTAAATTCGG
1 TTTGGGTTAATTTCGG
25925 GTCAGTTTTG
Statistics
Matches: 26, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
15 9 0.35
16 17 0.65
ACGTcount: A:0.15, C:0.09, G:0.28, T:0.49
Consensus pattern (16 bp):
TTTGGGTTAATTTCGG
Found at i:26483 original size:20 final size:20
Alignment explanation
Indices: 26454--26526 Score: 110
Period size: 20 Copynumber: 3.6 Consensus size: 20
26444 TAATACAAAA
*
26454 TCGCAACGCGATACTGAATT
1 TCGCAACGCGATACTGACTT
*
26474 TCGTAACGCGATACTGACTT
1 TCGCAACGCGATACTGACTT
*
26494 TCGCAACGCGATTCTGACTT
1 TCGCAACGCGATACTGACTT
*
26514 TCGCAACGAGATA
1 TCGCAACGCGATA
26527 ATACATAATC
Statistics
Matches: 47, Mismatches: 6, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.27, C:0.26, G:0.21, T:0.26
Consensus pattern (20 bp):
TCGCAACGCGATACTGACTT
Found at i:26699 original size:12 final size:12
Alignment explanation
Indices: 26680--26713 Score: 52
Period size: 12 Copynumber: 2.9 Consensus size: 12
26670 CTCTCTGGCG
26680 ACATCCGTTCCT
1 ACATCCGTTCCT
*
26692 ATATCCGTTCCT
1 ACATCCGTTCCT
26704 ACATCC-TTCC
1 ACATCCGTTCC
26714 CCATCCGGCA
Statistics
Matches: 20, Mismatches: 2, Indels: 1
0.87 0.09 0.04
Matches are distributed among these distances:
11 4 0.20
12 16 0.80
ACGTcount: A:0.18, C:0.41, G:0.06, T:0.35
Consensus pattern (12 bp):
ACATCCGTTCCT
Found at i:27295 original size:24 final size:24
Alignment explanation
Indices: 27268--27321 Score: 72
Period size: 24 Copynumber: 2.2 Consensus size: 24
27258 GTATTCGAAA
* *
27268 TTTGATCTTGGTCAATACCCGGAC
1 TTTGATATTAGTCAATACCCGGAC
* *
27292 TTTGATATTAGTCAATACTCGGAT
1 TTTGATATTAGTCAATACCCGGAC
27316 TTTGAT
1 TTTGAT
27322 GATGTTTCAG
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 26 1.00
ACGTcount: A:0.24, C:0.17, G:0.19, T:0.41
Consensus pattern (24 bp):
TTTGATATTAGTCAATACCCGGAC
Found at i:29798 original size:20 final size:20
Alignment explanation
Indices: 29773--29841 Score: 120
Period size: 20 Copynumber: 3.5 Consensus size: 20
29763 ATTCATTTGA
29773 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
29793 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGCGAAAATGG
* *
29813 CTATCGCAACGAGAAAATCG
1 CTATCGCAACGCGAAAATGG
29833 CTATCGCAA
1 CTATCGCAA
29842 TGAGAAAACC
Statistics
Matches: 47, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
20 47 1.00
ACGTcount: A:0.36, C:0.26, G:0.22, T:0.16
Consensus pattern (20 bp):
CTATCGCAACGCGAAAATGG
Found at i:29846 original size:20 final size:20
Alignment explanation
Indices: 29773--29849 Score: 118
Period size: 20 Copynumber: 3.9 Consensus size: 20
29763 ATTCATTTGA
*
29773 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGAGAAAATGG
*
29793 CTATCGCAACGCGAAAATGG
1 CTATCGCAACGAGAAAATGG
*
29813 CTATCGCAACGAGAAAATCG
1 CTATCGCAACGAGAAAATGG
*
29833 CTATCGCAATGAGAAAA
1 CTATCGCAACGAGAAAA
29850 CCGCATTGTG
Statistics
Matches: 54, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 54 1.00
ACGTcount: A:0.39, C:0.23, G:0.22, T:0.16
Consensus pattern (20 bp):
CTATCGCAACGAGAAAATGG
Found at i:31961 original size:20 final size:19
Alignment explanation
Indices: 31938--32005 Score: 82
Period size: 20 Copynumber: 3.5 Consensus size: 19
31928 GAAACTTAAA
31938 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCG-AAATGACT
*
31958 ATCGCAACGCGGAAATGCCT
1 ATCGCAACGC-GAAATGACT
* **
31978 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGACT
31997 ATCGCAACG
1 ATCGCAACG
32006 ACAAAATCGC
Statistics
Matches: 41, Mismatches: 6, Indels: 3
0.82 0.12 0.06
Matches are distributed among these distances:
19 14 0.34
20 26 0.63
21 1 0.02
ACGTcount: A:0.38, C:0.25, G:0.22, T:0.15
Consensus pattern (19 bp):
ATCGCAACGCGAAATGACT
Found at i:32013 original size:14 final size:14
Alignment explanation
Indices: 31994--32084 Score: 83
Period size: 14 Copynumber: 5.9 Consensus size: 14
31984 ATGCGAAATG
31994 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
32008 AAAATCGCAATGCGAAATG
1 AAAATCGCAA--CG--A-C
32027 AAAATCGCAACGAC
1 AAAATCGCAACGAC
*
32041 AAAATCGCAATGCGAA
1 AAAATCGCAA--CGAC
32057 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
32073 AAAATCGCAACG
1 AAAATCGCAACG
32085 CGAAACACAA
Statistics
Matches: 64, Mismatches: 4, Indels: 18
0.74 0.05 0.21
Matches are distributed among these distances:
14 31 0.48
15 1 0.02
16 10 0.16
17 2 0.03
18 10 0.16
19 10 0.16
ACGTcount: A:0.48, C:0.23, G:0.18, T:0.11
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:32069 original size:32 final size:33
Alignment explanation
Indices: 31978--32089 Score: 208
Period size: 33 Copynumber: 3.4 Consensus size: 33
31968 GGAAATGCCT
31978 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
32011 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
32044 ATCGCAATGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAA
*
32076 ATCGCAACGCGAAA
1 ATCGCAATGCGAAA
32090 CACAAATCGC
Statistics
Matches: 78, Mismatches: 1, Indels: 1
0.98 0.01 0.01
Matches are distributed among these distances:
32 29 0.37
33 49 0.63
ACGTcount: A:0.47, C:0.22, G:0.19, T:0.12
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAA
Found at i:32097 original size:65 final size:66
Alignment explanation
Indices: 31978--32100 Score: 205
Period size: 65 Copynumber: 1.9 Consensus size: 66
31968 GGAAATGCCT
* *
31978 ATCGCAATGCGAAATGAAAATCGCAACGACAAAATCGCAATGCGAAATGAAAATCGCAACGACAA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAAATCGCAACGCGAAATCAAAATCGCAACGACAA
32043 A
66 A
32044 ATCGCAATGCGAAATG-AAATCGCAACGACAAAATCGCAACGCGAAA-CACAAATCGCA
1 ATCGCAATGCGAAATGAAAATCGCAACGACAAAATCGCAACGCGAAATCA-AAATCGCA
32101 TTGCGATTTT
Statistics
Matches: 54, Mismatches: 2, Indels: 3
0.92 0.03 0.05
Matches are distributed among these distances:
64 1 0.02
65 37 0.69
66 16 0.30
ACGTcount: A:0.47, C:0.24, G:0.18, T:0.11
Consensus pattern (66 bp):
ATCGCAATGCGAAATGAAAATCGCAACGACAAAATCGCAACGCGAAATCAAAATCGCAACGACAA
A
Found at i:32118 original size:19 final size:19
Alignment explanation
Indices: 32096--32192 Score: 97
Period size: 19 Copynumber: 5.6 Consensus size: 19
32086 GAAACACAAA
32096 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
32115 TCGCGTTGCGATTTT-A--
1 TCGCATTGCGATTTTCATT
32131 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
* *
32148 TCGCATTGTGA-TTT--TG
1 TCGCATTGCGATTTTCATT
32164 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
32181 TCGCATTGCGAT
1 TCGCATTGCGAT
32193 AGCCATTTCC
Statistics
Matches: 63, Mismatches: 5, Indels: 20
0.72 0.06 0.23
Matches are distributed among these distances:
14 15 0.24
15 4 0.06
16 7 0.11
17 7 0.11
18 4 0.06
19 26 0.41
ACGTcount: A:0.13, C:0.19, G:0.21, T:0.47
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:32137 original size:14 final size:14
Alignment explanation
Indices: 32118--32176 Score: 55
Period size: 14 Copynumber: 3.9 Consensus size: 14
32108 TTTCATTTCG
32118 CGTTGCGATTTTAT
1 CGTTGCGATTTTAT
32132 CGTTGCGATTTTCATTT
1 CGTTGCGATTTT-A--T
* *
32149 CGCATTGTGATTTTGT
1 CG--TTGCGATTTTAT
32165 CGTTGCGATTTT
1 CGTTGCGATTTT
32177 CATTTCGCAT
Statistics
Matches: 37, Mismatches: 3, Indels: 10
0.74 0.06 0.20
Matches are distributed among these distances:
14 21 0.57
15 1 0.03
16 3 0.08
17 3 0.08
19 9 0.24
ACGTcount: A:0.12, C:0.15, G:0.22, T:0.51
Consensus pattern (14 bp):
CGTTGCGATTTTAT
Found at i:32143 original size:33 final size:33
Alignment explanation
Indices: 32101--32192 Score: 157
Period size: 33 Copynumber: 2.8 Consensus size: 33
32091 ACAAATCGCA
*
32101 TTGCGATTTTCATTTCGCGTTGCGATTTTATCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTATCG
* *
32134 TTGCGATTTTCATTTCGCATTGTGATTTTGTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTTATCG
32167 TTGCGATTTTCATTTCGCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGAT
32193 AGCCATTTCC
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 55 1.00
ACGTcount: A:0.13, C:0.17, G:0.21, T:0.49
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTATCG
Found at i:32211 original size:20 final size:19
Alignment explanation
Indices: 32177--32231 Score: 65
Period size: 20 Copynumber: 2.8 Consensus size: 19
32167 TTGCGATTTT
*
32177 CATTTCGCATTGCGATAGC
1 CATTTCGCGTTGCGATAGC
*
32196 CATTTCCGCGTTGCGATAGT
1 CATTT-CGCGTTGCGATAGC
*
32216 CATTTTCGTGTTGCGA
1 CA-TTTCGCGTTGCGA
32232 AAGTAAACTA
Statistics
Matches: 31, Mismatches: 3, Indels: 3
0.84 0.08 0.08
Matches are distributed among these distances:
19 5 0.16
20 23 0.74
21 3 0.10
ACGTcount: A:0.16, C:0.24, G:0.24, T:0.36
Consensus pattern (19 bp):
CATTTCGCGTTGCGATAGC
Found at i:32739 original size:18 final size:18
Alignment explanation
Indices: 32713--32757 Score: 72
Period size: 18 Copynumber: 2.5 Consensus size: 18
32703 GTCGATCAGA
*
32713 TGATGGCTCTGGGTGAGG
1 TGATGGCTCTGGGCGAGG
*
32731 TGATAGCTCTGGGCGAGG
1 TGATGGCTCTGGGCGAGG
32749 TGATGGCTC
1 TGATGGCTC
32758 CCGAAGTAGA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.13, C:0.16, G:0.44, T:0.27
Consensus pattern (18 bp):
TGATGGCTCTGGGCGAGG
Found at i:34125 original size:20 final size:20
Alignment explanation
Indices: 34077--34135 Score: 73
Period size: 20 Copynumber: 3.0 Consensus size: 20
34067 AATAGTTTCT
** *
34077 GAAAATGAAAATCGCAACAC
1 GAAAATGACTATCGCAACGC
34097 GAAAATGACTATCGCAACGC
1 GAAAATGACTATCGCAACGC
**
34117 GAATTTGACTATCGCAACG
1 GAAAATGACTATCGCAACG
34136 AGAGAATCGC
Statistics
Matches: 34, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.42, C:0.22, G:0.19, T:0.17
Consensus pattern (20 bp):
GAAAATGACTATCGCAACGC
Found at i:34425 original size:22 final size:22
Alignment explanation
Indices: 34398--34441 Score: 79
Period size: 22 Copynumber: 2.0 Consensus size: 22
34388 GATGGAGATA
34398 GACGGATTTCGCCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
*
34420 GACGGATTTCGTCGGAGATGGG
1 GACGGATTTCGCCGGAGATGGG
34442 TGAGAGATGG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.18, C:0.16, G:0.45, T:0.20
Consensus pattern (22 bp):
GACGGATTTCGCCGGAGATGGG
Found at i:34712 original size:20 final size:20
Alignment explanation
Indices: 34621--34756 Score: 105
Period size: 20 Copynumber: 6.7 Consensus size: 20
34611 GATTATGTAT
*
34621 TATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGATAGTCAG
* *
34641 AATCGCGTTGCGAAAGTCAG
1 TATCGCGTTGCGATAGTCAG
* * *
34661 TATCTCGTTGCGATTTTGT-AT
1 TATCGCGTTGCGA--TAGTCAG
*
34682 TATCGCATTGCGATAGTCAG
1 TATCGCGTTGCGATAGTCAG
* * *
34702 TATCTCGTTGCGATTTTGT-AT
1 TATCGCGTTGCGA--TAGTCAG
* *
34723 TATCGCATTGCGATAGTTAG
1 TATCGCGTTGCGATAGTCAG
*
34743 TATCGCATTGCGAT
1 TATCGCGTTGCGAT
34757 TTTCCCAATT
Statistics
Matches: 92, Mismatches: 18, Indels: 12
0.75 0.15 0.10
Matches are distributed among these distances:
19 6 0.07
20 57 0.62
21 24 0.26
22 5 0.05
ACGTcount: A:0.22, C:0.18, G:0.24, T:0.36
Consensus pattern (20 bp):
TATCGCGTTGCGATAGTCAG
Found at i:34777 original size:41 final size:41
Alignment explanation
Indices: 34642--34759 Score: 191
Period size: 41 Copynumber: 2.9 Consensus size: 41
34632 GAAAGTCAGA
* *
34642 ATCGCGTTGCGAAAGTCAGTATCTCGTTGCGATTTTGTATT
1 ATCGCATTGCGATAGTCAGTATCTCGTTGCGATTTTGTATT
34683 ATCGCATTGCGATAGTCAGTATCTCGTTGCGATTTTGTATT
1 ATCGCATTGCGATAGTCAGTATCTCGTTGCGATTTTGTATT
* * *
34724 ATCGCATTGCGATAGTTAGTATCGCATTGCGATTTT
1 ATCGCATTGCGATAGTCAGTATCTCGTTGCGATTTT
34760 CCCAATTCGC
Statistics
Matches: 72, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
41 72 1.00
ACGTcount: A:0.20, C:0.17, G:0.23, T:0.40
Consensus pattern (41 bp):
ATCGCATTGCGATAGTCAGTATCTCGTTGCGATTTTGTATT
Found at i:36156 original size:3 final size:3
Alignment explanation
Indices: 36148--36190 Score: 86
Period size: 3 Copynumber: 14.3 Consensus size: 3
36138 AATTTTCACT
36148 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA T
36191 AAATAATAAT
Statistics
Matches: 40, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 40 1.00
ACGTcount: A:0.33, C:0.00, G:0.00, T:0.67
Consensus pattern (3 bp):
TTA
Found at i:36749 original size:37 final size:32
Alignment explanation
Indices: 36708--36786 Score: 86
Period size: 33 Copynumber: 2.3 Consensus size: 32
36698 ATCTAAAATC
*
36708 TAAAATTTAAAAGTCTATAATATATATAATTTACAAA
1 TAAAATTTAAAAAT-TA-AAT-TATATAA-TTA-AAA
*
36745 TAAAATTCAAAAAATTAAATTATATAATTAAAA
1 TAAAATT-TAAAAATTAAATTATATAATTAAAA
36778 TAAAATTTA
1 TAAAATTTA
36787 TTAAAATTCA
Statistics
Matches: 38, Mismatches: 3, Indels: 7
0.79 0.06 0.15
Matches are distributed among these distances:
32 1 0.03
33 10 0.26
34 3 0.08
35 7 0.18
36 3 0.08
37 9 0.24
38 5 0.13
ACGTcount: A:0.58, C:0.04, G:0.01, T:0.37
Consensus pattern (32 bp):
TAAAATTTAAAAATTAAATTATATAATTAAAA
Found at i:36801 original size:22 final size:21
Alignment explanation
Indices: 36744--36812 Score: 61
Period size: 22 Copynumber: 3.2 Consensus size: 21
36734 TAATTTACAA
36744 ATAAAATTCAAAA-AATTAAATT
1 ATAAAATTCAAAATAA--AAATT
* *
36766 ATATAATT-AAAATAAAATTT
1 ATAAAATTCAAAATAAAAATT
*
36786 ATTAAAATTCAAAATAAAGAAAT
1 A-TAAAATTCAAAATAAA-AATT
36809 ATAA
1 ATAA
36813 TTAAATTTCA
Statistics
Matches: 38, Mismatches: 5, Indels: 8
0.75 0.10 0.16
Matches are distributed among these distances:
20 5 0.13
21 10 0.26
22 20 0.53
23 3 0.08
ACGTcount: A:0.64, C:0.03, G:0.01, T:0.32
Consensus pattern (21 bp):
ATAAAATTCAAAATAAAAATT
Found at i:36906 original size:39 final size:38
Alignment explanation
Indices: 36859--36963 Score: 97
Period size: 38 Copynumber: 2.7 Consensus size: 38
36849 TTCAAAAAAT
* *
36859 AATTTAGAATGTTAATGTGAAATAATTTAATAAATTAAG
1 AATTTAGAATGTT-ATGTGAAATAATTTAAGAAAATAAG
* * *
36898 AATTTAGAACGTTATGTGTTAA-AATTTAAGAAAATAGG
1 AATTTAGAATGTTATGTG-AAATAATTTAAGAAAATAAG
* *
36936 ATTTTAGAATGCTGGA-GTGAAATAATTT
1 AATTTAGAATG-T-TATGTGAAATAATTT
36964 GAGGATTATG
Statistics
Matches: 53, Mismatches: 9, Indels: 8
0.76 0.13 0.11
Matches are distributed among these distances:
38 29 0.55
39 23 0.43
40 1 0.02
ACGTcount: A:0.44, C:0.02, G:0.17, T:0.37
Consensus pattern (38 bp):
AATTTAGAATGTTATGTGAAATAATTTAAGAAAATAAG
Found at i:37401 original size:31 final size:31
Alignment explanation
Indices: 37355--37430 Score: 98
Period size: 31 Copynumber: 2.5 Consensus size: 31
37345 TTAACTCGGG
* *
37355 GTGACCACATTTTAATTAAATAAAAACAAAA
1 GTGACCATATCTTAATTAAATAAAAACAAAA
* ***
37386 GTGACCCTATCTTAATTAAATAAAAATGTAA
1 GTGACCATATCTTAATTAAATAAAAACAAAA
37417 GTGACCATATCTTA
1 GTGACCATATCTTA
37431 TGTATTTTGA
Statistics
Matches: 38, Mismatches: 7, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
31 38 1.00
ACGTcount: A:0.46, C:0.14, G:0.09, T:0.30
Consensus pattern (31 bp):
GTGACCATATCTTAATTAAATAAAAACAAAA
Found at i:44151 original size:15 final size:15
Alignment explanation
Indices: 44062--44106 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 15
44052 TCGGGCCGAG
* *
44062 TATATATATTTAAAT
1 TATATATATATATAT
* *
44077 TAAATATATAAATAT
1 TATATATATATATAT
44092 TATATATATATATAT
1 TATATATATATATAT
44107 ATTTTCAATT
Statistics
Matches: 24, Mismatches: 6, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (15 bp):
TATATATATATATAT
Found at i:44175 original size:45 final size:45
Alignment explanation
Indices: 44069--44160 Score: 141
Period size: 45 Copynumber: 2.1 Consensus size: 45
44059 GAGTATATAT
* * **
44069 ATTTAAATTAAATATATAAATATTATATATATATATATATTTTCA
1 ATTTAAATTAAATTTATTAATATTATATATATATATATATAATCA
44114 ATTTAAATTAAATTTATTAATATTATATATATATATATATAAT-A
1 ATTTAAATTAAATTTATTAATATTATATATATATATATATAATCA
44158 ATT
1 ATT
44161 ATTTTTAATA
Statistics
Matches: 43, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
44 4 0.09
45 39 0.91
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.50
Consensus pattern (45 bp):
ATTTAAATTAAATTTATTAATATTATATATATATATATATAATCA
Found at i:46910 original size:32 final size:31
Alignment explanation
Indices: 46842--46927 Score: 127
Period size: 32 Copynumber: 2.7 Consensus size: 31
46832 AAGTCAATCG
* * * *
46842 ATCCAATTTTGACATGACTTGGAAACCACCA
1 ATCCAATTTTGACCTGAATTGAAAACAACCA
46873 ATCCAATTTTGACCTGAATTGAAAAGCAACCA
1 ATCCAATTTTGACCTGAATTGAAAA-CAACCA
46905 ATCCAATTTTGACCTGAATTGAA
1 ATCCAATTTTGACCTGAATTGAA
46928 TTTTCATAGA
Statistics
Matches: 50, Mismatches: 4, Indels: 1
0.91 0.07 0.02
Matches are distributed among these distances:
31 22 0.44
32 28 0.56
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.28
Consensus pattern (31 bp):
ATCCAATTTTGACCTGAATTGAAAACAACCA
Found at i:47252 original size:75 final size:75
Alignment explanation
Indices: 47152--47309 Score: 284
Period size: 75 Copynumber: 2.1 Consensus size: 75
47142 TAAAAATTAA
*
47152 TATT-AAAATGATATTTATATAAATGATAAAGTATCCAAATCCATGATATAAATAGTTTAACTAT
1 TATTAAAAATGATATTAATATAAATGATAAAGTATCCAAATCCATGATATAAATAGTTTAACTAT
47216 AAATTAAAAT
66 AAATTAAAAT
47226 TATTAAAAATGAATATTAATAT-AATGATAAAGTATCCAAATCCATGATATAAATAGTTTAACTA
1 TATTAAAAATG-ATATTAATATAAATGATAAAGTATCCAAATCCATGATATAAATAGTTTAACTA
47290 TAAATTAAAAT
65 TAAATTAAAAT
47301 TATTAAAAA
1 TATTAAAAA
47310 ATCTTTTGAT
Statistics
Matches: 81, Mismatches: 1, Indels: 3
0.95 0.01 0.04
Matches are distributed among these distances:
74 4 0.05
75 68 0.84
76 9 0.11
ACGTcount: A:0.52, C:0.06, G:0.06, T:0.35
Consensus pattern (75 bp):
TATTAAAAATGATATTAATATAAATGATAAAGTATCCAAATCCATGATATAAATAGTTTAACTAT
AAATTAAAAT
Found at i:48362 original size:28 final size:27
Alignment explanation
Indices: 48331--48391 Score: 81
Period size: 25 Copynumber: 2.3 Consensus size: 27
48321 GTTTAGTGTT
*
48331 TAACGTTATTTCGTTCTAGTTTGCTGTC
1 TAACGTT-TTTCATTCTAGTTTGCTGTC
*
48359 TAACG--TTTCATTCTAGTTTGGTGTC
1 TAACGTTTTTCATTCTAGTTTGCTGTC
48384 TAACGTTT
1 TAACGTTT
48392 CATTCTGTAA
Statistics
Matches: 29, Mismatches: 2, Indels: 5
0.81 0.06 0.14
Matches are distributed among these distances:
25 23 0.79
27 1 0.03
28 5 0.17
ACGTcount: A:0.16, C:0.16, G:0.18, T:0.49
Consensus pattern (27 bp):
TAACGTTTTTCATTCTAGTTTGCTGTC
Found at i:48373 original size:25 final size:25
Alignment explanation
Indices: 48339--48397 Score: 100
Period size: 25 Copynumber: 2.4 Consensus size: 25
48329 TTTAACGTTA
*
48339 TTTCGTTCTAGTTTGCTGTCTAACG
1 TTTCATTCTAGTTTGCTGTCTAACG
*
48364 TTTCATTCTAGTTTGGTGTCTAACG
1 TTTCATTCTAGTTTGCTGTCTAACG
48389 TTTCATTCT
1 TTTCATTCT
48398 GTAACTTAGT
Statistics
Matches: 32, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
25 32 1.00
ACGTcount: A:0.14, C:0.19, G:0.17, T:0.51
Consensus pattern (25 bp):
TTTCATTCTAGTTTGCTGTCTAACG
Found at i:56996 original size:17 final size:16
Alignment explanation
Indices: 56950--57004 Score: 74
Period size: 16 Copynumber: 3.4 Consensus size: 16
56940 TAACTGTATT
*
56950 ACCTGACATGTTTTCA
1 ACCTGACATGTTTTTA
*
56966 ACCTGACCTGTTTTTA
1 ACCTGACATGTTTTTA
*
56982 ATCTGACATGTTTTTTA
1 ACCTGACATG-TTTTTA
56999 ACCTGA
1 ACCTGA
57005 TCTGATATTT
Statistics
Matches: 33, Mismatches: 5, Indels: 1
0.85 0.13 0.03
Matches are distributed among these distances:
16 22 0.67
17 11 0.33
ACGTcount: A:0.24, C:0.22, G:0.13, T:0.42
Consensus pattern (16 bp):
ACCTGACATGTTTTTA
Found at i:57540 original size:17 final size:17
Alignment explanation
Indices: 57507--57540 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
57497 CTTTATAGTT
**
57507 TATATATATATGTTATA
1 TATATATATATACTATA
57524 TATATATATATACTATA
1 TATATATATATACTATA
57541 CAGGTTTATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 15 1.00
ACGTcount: A:0.44, C:0.03, G:0.03, T:0.50
Consensus pattern (17 bp):
TATATATATATACTATA
Found at i:57987 original size:7 final size:7
Alignment explanation
Indices: 57975--58052 Score: 59
Period size: 7 Copynumber: 11.3 Consensus size: 7
57965 GTCTATTTAA
57975 TTAGGGT
1 TTAGGGT
57982 TTAGGGT
1 TTAGGGT
**
57989 TTATAGT
1 TTAGGGT
*
57996 TTATGGT
1 TTAGGGT
**
58003 TTAAAGT
1 TTAGGGT
* *
58010 TAATGGT
1 TTAGGGT
58017 TTAGGGT
1 TTAGGGT
* *
58024 TTATGTT
1 TTAGGGT
*
58031 TTAAGGT
1 TTAGGGT
58038 TTA-GGT
1 TTAGGGT
58044 TTAGGGT
1 TTAGGGT
58051 TT
1 TT
58053 TTATATATAT
Statistics
Matches: 56, Mismatches: 14, Indels: 2
0.78 0.19 0.03
Matches are distributed among these distances:
6 6 0.11
7 50 0.89
ACGTcount: A:0.21, C:0.00, G:0.29, T:0.50
Consensus pattern (7 bp):
TTAGGGT
Found at i:58061 original size:2 final size:2
Alignment explanation
Indices: 58054--58117 Score: 87
Period size: 2 Copynumber: 33.0 Consensus size: 2
58044 TTAGGGTTTT
*
58054 TA TA TA TA TA TA TA TA TA TA TA T- TA TA TA TA TA TA TT TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
* *
58095 TA TT TA TA TA T- TT TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA
58118 GAAAATTAAA
Statistics
Matches: 55, Mismatches: 5, Indels: 4
0.86 0.08 0.06
Matches are distributed among these distances:
1 2 0.04
2 53 0.96
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (2 bp):
TA
Found at i:58096 original size:29 final size:29
Alignment explanation
Indices: 58054--58117 Score: 101
Period size: 29 Copynumber: 2.2 Consensus size: 29
58044 TTAGGGTTTT
58054 TATATATATATATATATATATATTATATA
1 TATATATATATATATATATATATTATATA
* * *
58083 TATATATTTATATATTTATATATTTTATA
1 TATATATATATATATATATATATTATATA
58112 TATATA
1 TATATA
58118 GAAAATTAAA
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 32 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (29 bp):
TATATATATATATATATATATATTATATA
Found at i:58379 original size:17 final size:17
Alignment explanation
Indices: 58347--58398 Score: 86
Period size: 17 Copynumber: 3.0 Consensus size: 17
58337 ATTTCCCAAT
*
58347 TTTCCTCTAAATTCTCAA
1 TTTCC-CTATATTCTCAA
58365 TTTCCCTATATTCTCAA
1 TTTCCCTATATTCTCAA
58382 TTTCCCTATATTCTCAA
1 TTTCCCTATATTCTCAA
58399 ATTTTCTCAA
Statistics
Matches: 33, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
17 28 0.85
18 5 0.15
ACGTcount: A:0.25, C:0.29, G:0.00, T:0.46
Consensus pattern (17 bp):
TTTCCCTATATTCTCAA
Found at i:58384 original size:44 final size:45
Alignment explanation
Indices: 58336--58450 Score: 155
Period size: 44 Copynumber: 2.6 Consensus size: 45
58326 ATTCCCTCTG
58336 AATTTCCCAATTTTCCTCTAAATTCTCAATTTCCCTATATTCTC-
1 AATTTCCCAATTTTCCTCTAAATTCTCAATTTCCCTATATTCTCA
* *
58380 AATTTCCCTATATT-CTC-AAATTTTCTCAATTTCCCTATATTCTCA
1 AATTTCCCAATTTTCCTCTAAA--TTCTCAATTTCCCTATATTCTCA
*
58425 AATTTTCTCAATTTTCCTCTAAATTC
1 AA-TTTCCCAATTTTCCTCTAAATTC
58451 CCAAATAAAA
Statistics
Matches: 60, Mismatches: 5, Indels: 10
0.80 0.07 0.13
Matches are distributed among these distances:
42 3 0.05
43 3 0.05
44 34 0.57
45 2 0.03
46 12 0.20
47 3 0.05
48 3 0.05
ACGTcount: A:0.26, C:0.27, G:0.00, T:0.47
Consensus pattern (45 bp):
AATTTCCCAATTTTCCTCTAAATTCTCAATTTCCCTATATTCTCA
Found at i:58405 original size:27 final size:27
Alignment explanation
Indices: 58375--58456 Score: 128
Period size: 27 Copynumber: 3.0 Consensus size: 27
58365 TTTCCCTATA
58375 TTCTCAATTTCCCTATATTCTCAAATT
1 TTCTCAATTTCCCTATATTCTCAAATT
58402 TTCTCAATTTCCCTATATTCTCAAATT
1 TTCTCAATTTCCCTATATTCTCAAATT
* *
58429 TTCTCAATTTTCCTCTAAATTCCCAAAT
1 TTCTCAA-TTTCC-CTATATTCTCAAAT
58457 AAAATCAAAT
Statistics
Matches: 51, Mismatches: 2, Indels: 2
0.93 0.04 0.04
Matches are distributed among these distances:
27 34 0.67
28 5 0.10
29 12 0.24
ACGTcount: A:0.27, C:0.27, G:0.00, T:0.46
Consensus pattern (27 bp):
TTCTCAATTTCCCTATATTCTCAAATT
Found at i:58853 original size:31 final size:32
Alignment explanation
Indices: 58781--58867 Score: 92
Period size: 31 Copynumber: 2.8 Consensus size: 32
58771 TCATTATTTA
58781 TTCACATTTTACATTTATTTCAA-TTTAATCCT
1 TTCAC-TTTTACATTTATTTCAATTTTAATCCT
* *
58813 TTTATTTTTA-ATTTATTTCAATTTTAAGT-CT
1 TTCACTTTTACATTTATTTCAATTTTAA-TCCT
* *
58844 TTCACTTTTATATGTA-TTCAATTT
1 TTCACTTTTACATTTATTTCAATTT
58868 AGTCCTTAAA
Statistics
Matches: 47, Mismatches: 5, Indels: 7
0.80 0.08 0.12
Matches are distributed among these distances:
30 11 0.23
31 28 0.60
32 8 0.17
ACGTcount: A:0.26, C:0.13, G:0.02, T:0.59
Consensus pattern (32 bp):
TTCACTTTTACATTTATTTCAATTTTAATCCT
Found at i:64145 original size:20 final size:20
Alignment explanation
Indices: 64122--64160 Score: 60
Period size: 20 Copynumber: 1.9 Consensus size: 20
64112 TAATAATTTT
* *
64122 ATAATATTATTTTTATTAAA
1 ATAATATTAATTATATTAAA
64142 ATAATATTAATTATATTAA
1 ATAATATTAATTATATTAA
64161 TATTTTATAT
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (20 bp):
ATAATATTAATTATATTAAA
Found at i:64175 original size:17 final size:16
Alignment explanation
Indices: 64109--64176 Score: 61
Period size: 15 Copynumber: 4.3 Consensus size: 16
64099 TATTAATCAT
*
64109 TATTAATAATTTTATAA
1 TATTAAT-ATTTTATTA
64126 TATT-AT-TTTTATTA
1 TATTAATATTTTATTA
* * *
64140 AAATAATA-TTAATTA
1 TATTAATATTTTATTA
64155 TATTAATATTTTATATA
1 TATTAATATTTTAT-TA
64172 TATTA
1 TATTA
64177 TTAAATTAAA
Statistics
Matches: 40, Mismatches: 7, Indels: 8
0.73 0.13 0.15
Matches are distributed among these distances:
14 9 0.22
15 14 0.35
16 6 0.15
17 11 0.28
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
TATTAATATTTTATTA
Found at i:64273 original size:18 final size:19
Alignment explanation
Indices: 64228--64273 Score: 53
Period size: 18 Copynumber: 2.6 Consensus size: 19
64218 CTTAGTATAT
*
64228 ATTA-ATATAATATTAAAA
1 ATTATATATATTATTAAAA
*
64246 AGTATA-ATATTATT-AAA
1 ATTATATATATTATTAAAA
64263 ATTATATATAT
1 ATTATATATAT
64274 ATATATTAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 4
0.77 0.10 0.13
Matches are distributed among these distances:
17 8 0.35
18 14 0.61
19 1 0.04
ACGTcount: A:0.54, C:0.00, G:0.02, T:0.43
Consensus pattern (19 bp):
ATTATATATATTATTAAAA
Found at i:64274 original size:58 final size:55
Alignment explanation
Indices: 64168--64274 Score: 146
Period size: 58 Copynumber: 1.9 Consensus size: 55
64158 TAATATTTTA
*
64168 TATATATTATTAAATTAAAAAGTATAATATTCATATATATTATAATATAACTTAG
1 TATATATTATTAAATTAAAAAGTATAATATTCATATAAATTATAATATAACTTAG
64223 TATATATTAATATAATATTAAAAAGTATAATATT-AT-TAAAATTATATATATA
1 TATATATT-AT-TAA-ATTAAAAAGTATAATATTCATAT-AAATTATA-ATATA
64275 TATATTAAAT
Statistics
Matches: 46, Mismatches: 1, Indels: 7
0.85 0.02 0.13
Matches are distributed among these distances:
55 8 0.17
56 3 0.07
57 12 0.26
58 23 0.50
ACGTcount: A:0.51, C:0.02, G:0.03, T:0.44
Consensus pattern (55 bp):
TATATATTATTAAATTAAAAAGTATAATATTCATATAAATTATAATATAACTTAG
Found at i:64284 original size:20 final size:20
Alignment explanation
Indices: 64153--64284 Score: 55
Period size: 20 Copynumber: 6.5 Consensus size: 20
64143 TAATATTAAT
*
64153 TATATTAATATTTTATATATA
1 TATATTAA-ATTATATATATA
* *
64174 T-TATTAAATTAAAAAGTATA
1 TATATTAAATTATATA-TATA
*
64194 -ATATT-CA-TATATAT-TA
1 TATATTAAATTATATATATA
*
64210 TA-ATATAACTTAGTATATAT-
1 TATAT-TAAATTA-TATATATA
* *
64230 TA-ATATAATATTAAAAAGTATAA
1 TATAT-TAA-ATTATATA-TAT-A
64253 TATTATTAAAATTATATATATA
1 TA-TATT-AAATTATATATATA
64275 TATATTAAAT
1 TATATTAAAT
64285 ATTTTAATAA
Statistics
Matches: 83, Mismatches: 13, Indels: 31
0.65 0.10 0.24
Matches are distributed among these distances:
16 4 0.05
17 3 0.04
18 4 0.05
19 8 0.10
20 33 0.40
21 12 0.14
22 3 0.04
23 5 0.06
24 7 0.08
25 4 0.05
ACGTcount: A:0.50, C:0.02, G:0.02, T:0.46
Consensus pattern (20 bp):
TATATTAAATTATATATATA
Found at i:69515 original size:23 final size:23
Alignment explanation
Indices: 69489--69536 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
69479 TAAAAGTACA
*
69489 ATAACATATTAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
69512 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
69535 AT
1 AT
69537 TGACCTATTT
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.35, C:0.10, G:0.19, T:0.35
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:70003 original size:23 final size:22
Alignment explanation
Indices: 69976--70044 Score: 81
Period size: 23 Copynumber: 3.2 Consensus size: 22
69966 ATACTTTATA
69976 ATATAAGCACTACCTATTACATT
1 ATATAAGC-CTACCTATTACATT
*
69999 ATATAAACGCTACCTATTACATT
1 ATATAAGC-CTACCTATTACATT
*
70022 ATAT--G-CTACCTATTACATC
1 ATATAAGCCTACCTATTACATT
70041 ATAT
1 ATAT
70045 TTTACCTATT
Statistics
Matches: 42, Mismatches: 4, Indels: 4
0.84 0.08 0.08
Matches are distributed among these distances:
19 17 0.40
23 25 0.60
ACGTcount: A:0.38, C:0.22, G:0.04, T:0.36
Consensus pattern (22 bp):
ATATAAGCCTACCTATTACATT
Found at i:70031 original size:19 final size:19
Alignment explanation
Indices: 69985--70055 Score: 79
Period size: 19 Copynumber: 3.5 Consensus size: 19
69975 AATATAAGCA
69985 CTACCTATTACATTATATAAACG
1 CTACCTATTACATTATAT----G
70008 CTACCTATTACATTATATG
1 CTACCTATTACATTATATG
* *
70027 CTACCTATTACATCATATT
1 CTACCTATTACATTATATG
*
70046 TTACCTATTA
1 CTACCTATTA
70056 TATTGAAAGT
Statistics
Matches: 45, Mismatches: 3, Indels: 4
0.87 0.06 0.08
Matches are distributed among these distances:
19 27 0.60
23 18 0.40
ACGTcount: A:0.34, C:0.23, G:0.03, T:0.41
Consensus pattern (19 bp):
CTACCTATTACATTATATG
Found at i:70439 original size:23 final size:23
Alignment explanation
Indices: 70409--70458 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
70399 ATACTTTACA
*
70409 ATATAAGCACTACCTATTACATT
1 ATATAAGCACTACCTATTACATC
*
70432 ATATAAGCGCTACCTATTACATC
1 ATATAAGCACTACCTATTACATC
70455 ATAT
1 ATAT
70459 TTTTACCTAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.38, C:0.22, G:0.06, T:0.34
Consensus pattern (23 bp):
ATATAAGCACTACCTATTACATC
Found at i:71252 original size:21 final size:21
Alignment explanation
Indices: 71222--71269 Score: 78
Period size: 21 Copynumber: 2.3 Consensus size: 21
71212 GATAAATACT
*
71222 TTACAATATAAGCACTACCTA
1 TTACATTATAAGCACTACCTA
*
71243 TTACATTATAAGCGCTACCTA
1 TTACATTATAAGCACTACCTA
71264 TTACAT
1 TTACAT
71270 CATATTTTTA
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.38, C:0.23, G:0.06, T:0.33
Consensus pattern (21 bp):
TTACATTATAAGCACTACCTA
Found at i:71728 original size:818 final size:817
Alignment explanation
Indices: 70007--72308 Score: 3778
Period size: 818 Copynumber: 2.9 Consensus size: 817
69997 TTATATAAAC
70007 GCTACCTATTACATTATAT----GCTACCTATTACATCATA-TTTTACCTATTATATTGAAAGTG
1 GCTACCTATTACATTATATAAGCGCTA-CTATTACATCATATTTTTACCTATTATATT-AAAGTG
* *
70067 TCCATACTTTTTATAAAAATGATCAATACTTTTTTTAAAGTTATGTAATTTATGTTTCAAATTTT
64 TCCATAC-TTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTTTC-AATTTT
70132 TTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATT
127 TTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATT
70197 ATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATTAACCAAAG
192 ATTTGATTGTTTTGATATTTTAT-AAATAATATTTAGAATTTAAATTTAACAATATTAACCAAAG
70262 ATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTACTAAATTAATATCTTAAAACT
256 ATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTACTAAATTAATATCTTAAAACT
70327 CACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAA
321 CACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAA
70392 ATGATAGATACTTTACAATATAAGCACTACCTATTACATTATATAAGCGCTACCTATTACATCAT
386 ATGATAGATACTTTACAATATAAGCACTACCTATTACA-T-TATAAGCGCTACCTATTACATCAT
70457 ATTTTTACCTATTATATTGAAAGTGT-CTATACTTTTTATAAAAAGGATCGATACTTTTTTTAAA
449 ATTTTTACCTATTATATTGAAAGTGTGC-ATACTTTTTATAAAAAGGATCGATAC-TTTTTTAAA
70521 GTTATGTAATTTATGTTTCAAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATT
512 GTTATGTAA-TT-TGTTTC-AATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATT
*
70586 TAATAATTTCATTTGCACAAAAAATTATTTAATTG-TTTGATATTTTATAAAATAATATTTAGAA
574 TAATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAA
70650 TTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTA
639 TTTAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTA
70715 A-TTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTG
704 ATTTACTAAATTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTG
70779 AAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAA
769 AAAAAAGTATGGACACTTTTATAAAAAGGATAGATACTTTACAATATAA
70828 GC-ACCTATTACATTATATAAGCGCTACATATTACATCATATTTTTACCTATTATATTAAAGTGT
1 GCTACCTATTACATTATATAAGCGCTAC-TATTACATCATATTTTTACCTATTATATTAAAGTGT
70892 CCATACTTTTAT-AAAAGGATCGATACTTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTT
65 CCATACTTTTATAAAAAGGATCGATAC-TTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTT
*
70956 TAATAGTGTTTCATGTTTTCAACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTAT
129 TAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTAT
*
71021 TTGATTATTTTGATATTTTATAAATAATATTTAGAATTTAAATTTAACAATATTAACCAAAGATA
194 TTGATTGTTTTGATATTTTATAAATAATATTTAGAATTTAAATTTAACAATATTAACCAAAGATA
71086 ATAATAAATATGT-A-ATATATGTTTATTG-TTTTAATTTACTAAATTAATATCTTAAAACTCAC
259 ATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTACTAAATTAATATCTTAAAACTCAC
*
71148 TCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAAGG
324 TCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAATG
*
71213 ATAAATACTTTACAATATAAGCACTACCTATTACATTATAAGCGCTACCTATTACATCATATTTT
389 ATAGATACTTTACAATATAAGCACTACCTATTACATTATAAGCGCTACCTATTACATCATATTTT
71278 TACCTATTATATTGAAAGTGTGCATACTTTTTATAAAAAGGATCGATACTTTTTTAAAGTTATGT
454 TACCTATTATATTGAAAGTGTGCATACTTTTTATAAAAAGGATCGATACTTTTTTAAAGTTATGT
*
71343 AATTTGTTTCAATTTTTTTAATAGTGTTTCTTGTTTTCCACCTACAATATTAATTTAATAATTTC
519 AATTTGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTC
*
71408 ATTTGTACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTA
584 ATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTA
71473 ACAATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTACTAAA
649 ACAATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTACTAAA
71538 TTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTAT
714 TTAATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTAT
*
71603 GGACACTTTTATAAAAAGGATATATACTTTACAATATAA
779 GGACACTTTTATAAAAAGGATAGATACTTTACAATATAA
71642 GTACTACCTATTACATTATATAAGCGCTATCTATTACATCATATTTTTA-CTATTATATTAAAAG
1 G--CTACCTATTACATTATATAAGCGCTA-CTATTACATCATATTTTTACCTATTATATT-AAAG
71706 TGTCCATACTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTT
62 TGTCCATACTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTT
*
71771 TTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATA
127 TTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATT
71836 ATTTGATTGTTTTGATATTTTATAACATAATATTTAGAATTTAAATTTAACAATATTAACCAAAG
192 ATTTGATTGTTTTGATATTTTATAA-ATAATATTTAGAATTTAAATTTAACAATATTAACCAAAG
* *
71901 ATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAAATTAATATCTTAAAACC
256 ATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTACTAAATTAATATCTTAAAACT
* *
71966 CACTCAAAAGATAATCTTAAATTAATGTTTTCCACAGTAAAAAAAGTATGGACACTTTTATAAAA
321 CACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAA
* *
72031 ATGATAGATACTTTAC-ATATATA-C-CTA--TACATACCTATTAT-A-CGCTACCTATTACATT
386 ATGATAGATACTTTACAATATA-AGCACTACCTA-TTA-C-ATTATAAGCGCTACCTATTACATC
72089 AT-TTTTTACCTATTATATTGAAA----G---------T-T-------AT-G---------T-AA
447 ATATTTTTACCTATTATATTGAAAGTGTGCATACTTTTTATAAAAAGGATCGATACTTTTTTAAA
72121 --T-T-T-A--TGTTTCAATTTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTA
512 GTTATGTAATTTGTTTCAA-TTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTA
72179 ATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATT
576 ATAATTTCATTTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATT
*
72244 TAAATTTAACAATATTAACCAAAGATAATAAT-AA-ATGTAATATATATGTTTATCG-TTTTAAT
641 TAAATTTAACAATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAAT
72306 TTA
706 TTA
72309 ATAATAATGT
Statistics
Matches: 1432, Mismatches: 24, Indels: 95
0.92 0.02 0.06
Matches are distributed among these distances:
776 10 0.01
777 20 0.01
778 10 0.01
779 140 0.10
780 1 0.00
781 1 0.00
782 1 0.00
783 1 0.00
785 2 0.00
786 1 0.00
795 1 0.00
796 2 0.00
803 1 0.00
804 1 0.00
812 77 0.05
813 102 0.07
814 114 0.08
815 18 0.01
816 87 0.06
817 208 0.15
818 221 0.15
819 20 0.01
820 42 0.03
821 166 0.12
822 104 0.07
823 36 0.03
824 29 0.02
825 16 0.01
ACGTcount: A:0.39, C:0.11, G:0.08, T:0.43
Consensus pattern (817 bp):
GCTACCTATTACATTATATAAGCGCTACTATTACATCATATTTTTACCTATTATATTAAAGTGTC
CATACTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTTTCAATTTTTTTA
ATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACAAAAAATTATTT
GATTGTTTTGATATTTTATAAATAATATTTAGAATTTAAATTTAACAATATTAACCAAAGATAAT
AATAAATATGTAATATATATGTTTATTGTTTTTAATTTACTAAATTAATATCTTAAAACTCACTC
AAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTTTATAAAAATGAT
AGATACTTTACAATATAAGCACTACCTATTACATTATAAGCGCTACCTATTACATCATATTTTTA
CCTATTATATTGAAAGTGTGCATACTTTTTATAAAAAGGATCGATACTTTTTTAAAGTTATGTAA
TTTGTTTCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCAT
TTGCACAAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAAC
AATATTAACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTACTAAATT
AATATCTTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGG
ACACTTTTATAAAAAGGATAGATACTTTACAATATAA
Found at i:71933 original size:412 final size:414
Alignment explanation
Indices: 69999--72113 Score: 3695
Period size: 412 Copynumber: 5.2 Consensus size: 414
69989 CTATTACATT
* *
69999 ATATAAACGCTACCTATTACATTATAT----GCTACCTATTACATCATA-TTTTACCTATTATAT
1 ATATAAGCACTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATAT
* *
70059 TGAAAGTGTCCATACTTTTTATAAAAATGATCAATACTTTTTTTAAAGTTATGTAATTTATGTTT
66 TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTTT
70124 CAAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCAC
131 C-AATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCAC
70189 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATT
195 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATT
70254 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTACTAAATTAATATC
260 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTACTAAATTAATATC
70319 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
325 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
*
70384 TTATAAAAATGATAGATACTTTACA
390 TTATAAAAAGGATAGATACTTTACA
70409 ATATAAGCACTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATAT
1 ATATAAGCACTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATAT
*
70474 TGAAAGTGTCTATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTTT
66 TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTTT
70539 CAAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCAC
131 C-AATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCAC
*
70604 AAAAAATTATTTAATTG-TTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATT
195 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATT
70668 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAA-TTACTAAATTAATATC
260 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTACTAAATTAATATC
70732 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
325 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
70797 TTATAAAAAGGATAGATACTTTACA
390 TTATAAAAAGGATAGATACTTTACA
*
70822 ATATAAG--C-ACCTATTACATTATATAAGCGCTACATATTACATCATATTTTTACCTATTATAT
1 ATATAAGCACTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATAT
70884 T-AAAGTGTCCATAC-TTTTAT-AAAAGGATCGATACTTTTTTTTAAAGTTATGTAATTTATGTT
66 TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATAC-TTTTTTTAAAGTTATGTAATTTATGTT
*
70946 TCAATTTTTTTAATAGTGTTTCATGTTTTCAACCTACAATATTAATTTAATAATTTCATTTGCAC
130 TCAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCAC
*
71011 AAAAAATTATTTGATTATTTTGATATTTTAT-AAATAATATTTAGAATTTAAATTTAACAATATT
195 AAAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATT
71075 AACCAAAGATAATAATAAATATGT-A-ATATATGTTTATTG-TTTTAATTTACTAAATTAATATC
260 AACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTACTAAATTAATATC
71137 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
325 TTAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTT
*
71202 TTATAAAAAGGATAAATACTTTACA
390 TTATAAAAAGGATAGATACTTTACA
71227 ATATAAGCACTACCTATTACA-T-TATAAGCGCTACCTATTACATCATATTTTTACCTATTATAT
1 ATATAAGCACTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATAT
*
71290 TGAAAGTGTGCATACTTTTTATAAAAAGGATCGATAC-TTTTTTAAAGTTATGTAA-TT-TGTTT
66 TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTTT
* *
71352 CAATTTTTTTAATAGTGTTTCTTGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGTACA
131 CAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACA
71417 AAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATTA
196 AAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATTA
71482 ACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTACTAAATTAATATCT
261 ACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTACTAAATTAATATCT
71547 TAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTT
326 TAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTT
*
71612 TATAAAAAGGATATATACTTTACA
391 TATAAAAAGGATAGATACTTTACA
* *
71636 ATATAAGTACTACCTATTACATTATATAAGCGCTATCTATTACATCATATTTTTA-CTATTATAT
1 ATATAAGCACTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATAT
*
71700 TAAAAGTGTCCATAC-TTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTTT
66 TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTTT
71764 CAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACA
131 CAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACA
* *
71829 AAAAATAATTTGATTGTTTTGATATTTTATAACATAATATTTAGAATTTAAATTTAACAATATTA
196 AAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATTA
*
71894 ACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTAATAAATTAATATCT
261 ACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTACTAAATTAATATCT
* * *
71959 TAAAACCCACTCAAAAGATAATCTTAAATTAATGTTTTCCACAGTAAAAAAAGTATGGACACTTT
326 TAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTT
*
72024 TATAAAAATGATAGATACTTTAC-
391 TATAAAAAGGATAGATACTTTACA
*
72047 ATAT----A-TACCTA-TACA-TACCTATTATA-CGCTACCTATTACATTAT-TTTTTACCTATT
1 ATATAAGCACTACCTATTACATTA--TA-TA-AGCGCTACCTATTACATCATATTTTTACCTATT
72103 ATATTGAAAGT
62 ATATTGAAAGT
72114 TATGTAATTT
Statistics
Matches: 1640, Mismatches: 37, Indels: 59
0.94 0.02 0.03
Matches are distributed among these distances:
404 8 0.00
405 226 0.14
406 115 0.07
407 215 0.13
408 79 0.05
409 179 0.11
410 120 0.07
411 37 0.02
412 278 0.17
413 112 0.07
414 113 0.07
415 158 0.10
ACGTcount: A:0.39, C:0.11, G:0.08, T:0.42
Consensus pattern (414 bp):
ATATAAGCACTACCTATTACATTATATAAGCGCTACCTATTACATCATATTTTTACCTATTATAT
TGAAAGTGTCCATACTTTTTATAAAAAGGATCGATACTTTTTTTAAAGTTATGTAATTTATGTTT
CAATTTTTTTAATAGTGTTTCATGTTTTCCACCTACAATATTAATTTAATAATTTCATTTGCACA
AAAAATTATTTGATTGTTTTGATATTTTATAAAATAATATTTAGAATTTAAATTTAACAATATTA
ACCAAAGATAATAATAAATATGTAATATATATGTTTATTGTTTTTAATTTACTAAATTAATATCT
TAAAACTCACTCAAAAGATAACCTTAAATTAATGTTTTCCACAGTGAAAAAAGTATGGACACTTT
TATAAAAAGGATAGATACTTTACA
Done.