Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001870.1 Hibiscus syriacus cultivar Beakdansim tig00003790_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83928

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
792--831
17
2.4
17
100
0
80
40
12
12
35
1.81
4131--4170
16
2.6
16
92
4
64
17
12
50
20
1.78
4247--4386
65
2.2
65
92
0
226
22
28
20
27
1.99
4799--4842
21
2.1
21
91
0
70
29
0
15
54
1.42
5365--5409
24
1.9
24
86
4
65
44
0
6
48
1.29
8639--8975
49
6.9
49
93
0
559
42
0
10
45
1.45
8874--8950
22
3.3
22
66
22
57
44
2
9
44
1.49
8643--8977
146
2.3
147
95
0
609
43
0
11
44
1.45
9064--9106
12
3.7
11
90
9
68
55
0
0
44
0.99
9136--9330
14
15.1
13
73
14
129
46
2
8
43
1.47
9136--9330
26
7.6
26
82
6
166
46
2
8
43
1.47
9172--9266
3
32.7
3
73
10
63
53
2
5
38
1.35
9173--9330
49
3.1
49
82
5
156
48
1
6
42
1.41
9447--9491
24
1.9
24
86
4
65
40
2
4
53
1.33
9458--9499
17
2.5
17
80
0
57
40
0
2
57
1.12
11829--11932
30
3.4
30
84
11
124
47
11
1
39
1.51
11989--12102
40
2.9
38
77
14
115
45
13
1
39
1.53
12112--12151
21
1.9
21
100
0
80
57
15
0
27
1.38
12357--12421
28
2.3
29
78
19
75
44
16
1
36
1.58
12503--12540
9
4.2
9
83
10
51
65
2
0
31
1.06
12562--12625
26
2.5
25
73
16
60
4
34
3
57
1.35
12934--12977
8
5.0
9
81
13
56
20
43
22
13
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
25942--25990
23
2.0
23
84
7
62
73
2
10
14
1.18
25942--26012
25
2.8
25
81
12
83
74
1
8
15
1.12
25917--26018
15
6.6
15
68
17
50
72
0
5
20
1.11
25987--26043
24
2.4
22
78
18
53
71
3
7
17
1.22
27332--27602
83
3.2
83
85
1
380
21
19
26
32
1.97
27604--27694
28
3.1
28
78
17
94
34
9
17
38
1.83
27592--27710
33
3.8
32
84
11
149
32
10
20
36
1.86
27810--28870
105
10.2
106
92
2
1626
23
18
25
32
1.97
27819--28870
313
3.4
312
92
3
1689
23
18
25
32
1.97
27819--28870
418
2.5
417
91
3
1653
23
18
25
32
1.97
28677--28870
94
2.1
93
90
0
298
24
17
25
33
1.96
32560--32608
23
2.0
23
84
7
62
73
2
10
14
1.18
32560--32631
24
2.8
25
79
14
76
75
1
8
15
1.11
32508--32645
13
11.5
11
66
24
50
74
1
5
18
1.09
32510--32645
12
11.0
12
68
21
68
74
1
5
18
1.10
32508--32635
20
6.4
19
67
16
64
75
1
5
17
1.08
32554--32631
28
2.9
27
74
20
74
74
1
7
16
1.11
32588--32644
28
2.1
27
80
9
62
77
0
8
14
0.99
32605--32662
24
2.4
23
78
16
55
72
3
6
17
1.21
38724--38773
23
2.2
23
92
0
82
54
4
4
38
1.38
40709--40746
17
2.2
17
86
9
51
73
5
0
21
1.02
47550--47587
15
2.5
15
95
0
67
15
39
15
28
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50361--50762
201
2.0
201
99
0
795
27
13
22
37
1.91
51083--51219
65
2.2
61
90
5
211
35
21
9
33
1.86
70060--70126
22
3.0
22
79
12
75
28
20
20
29
1.98
70291--70328
16
2.4
16
91
4
60
31
21
10
36
1.87
82486--82515
2
15.0
2
100
0
60
50
0
0
50
1.00
82820--82847
2
14.0
2
100
0
56
50
0
0
50
1.00

Tables:   1

The End!