genome.fa.s1871.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001871.1 Hibiscus syriacus cultivar Beakdansim tig00003793_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  159962

Tables:   1   

This is table  1  of  1  ( 82 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10732--10781	7	7.0	7	90	2	55	2	42	0	56	1.11
13749--13841	17	5.4	17	64	31	54	51	4	8	35	1.52
13743--13848	35	3.0	35	100	0	212	51	5	8	33	1.56
13766--13824	18	3.3	18	66	29	54	50	6	6	35	1.55
16872--16900	2	14.5	2	100	0	58	51	0	0	48	1.00
17470--17549	24	3.2	24	80	13	88	8	15	27	48	1.74
17480--17549	14	5.3	14	86	13	112	7	14	27	51	1.68
17470--17549	38	2.1	38	88	4	117	8	15	27	48	1.74
17487--17569	38	2.2	37	85	8	105	10	12	21	55	1.67
17480--17556	24	3.0	24	92	7	118	7	14	25	51	1.68
18628--18694	16	4.3	16	84	3	84	10	11	20	56	1.64
18626--18686	32	1.9	32	89	0	95	8	14	24	52	1.69
22507--22578	15	4.9	15	73	8	67	47	5	13	33	1.67
22507--22578	30	2.4	30	90	2	110	47	5	13	33	1.67
22890--22934	23	2.0	23	86	0	63	44	0	4	51	1.21
22891--22941	23	2.2	23	82	0	57	47	0	3	49	1.20
22929--23003	20	3.8	20	73	14	59	44	1	0	54	1.08
22928--23086	59	2.7	59	75	14	150	46	1	0	50	1.16
23054--23097	22	2.0	23	86	4	63	54	0	0	45	0.99
22970--23105	31	4.5	31	73	16	92	48	1	0	49	1.15
23012--23114	52	1.9	52	81	11	120	50	0	0	47	1.14
23321--23376	29	1.9	29	96	0	103	46	14	16	23	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23807--23847	21	2.0	21	85	9	57	56	4	9	29	1.53
26774--26826	24	2.2	24	86	6	72	56	22	11	9	1.63
27017--27050	10	3.4	10	84	15	52	58	14	8	17	1.61
46704--46881	60	3.0	60	79	7	191	33	21	6	38	1.79
48176--48214	19	2.0	20	90	5	62	51	10	2	35	1.50
50706--50737	14	2.3	14	100	0	64	6	37	0	56	1.25
52479--52548	34	2.0	35	91	2	115	24	8	14	52	1.69
54215--54280	2	33.0	2	100	0	132	50	0	0	50	1.00
54411--54477	33	2.0	33	94	5	118	50	10	14	23	1.74
62700--62799	2	50.0	2	100	0	200	50	0	0	50	1.00
65263--65301	19	2.0	20	95	5	71	48	0	0	51	1.00
65291--65353	2	31.5	2	100	0	126	49	0	0	50	1.00
66498--66554	20	2.7	22	78	15	66	43	5	14	36	1.67
67084--67239	31	5.0	31	94	1	260	19	18	23	38	1.93
68729--68754	2	13.0	2	100	0	52	50	0	0	50	1.00
69709--69928	92	2.4	89	80	5	237	24	16	12	46	1.81
71262--71942	112	6.1	112	93	1	1118	45	13	14	25	1.82
71814--72265	182	2.5	182	92	2	741	43	13	15	27	1.84
72698--72745	23	2.1	23	88	0	69	37	16	8	37	1.79
74753--74789	20	1.9	19	89	10	58	45	10	24	18	1.81
74943--74973	15	2.1	15	93	0	53	54	0	0	45	0.99
82844--82869	7	3.7	7	100	0	52	73	0	15	11	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
87494--87551	30	1.9	31	82	3	73	17	5	18	58	1.56
88536--88714	55	3.1	55	80	9	205	39	16	13	30	1.88
88515--88741	61	3.8	61	80	7	245	37	16	13	32	1.88
88952--88982	2	15.5	2	100	0	62	48	0	0	51	1.00
94832--94936	35	3.0	35	91	2	167	21	30	30	17	1.96
97799--97868	35	2.0	35	88	5	106	22	30	30	17	1.97
101045--101096	23	2.3	23	96	0	95	57	28	9	3	1.48
102291--102353	23	2.8	22	80	2	72	47	19	14	19	1.82
103661--103835	43	4.1	43	88	1	226	29	21	21	26	1.99
103702--103868	43	3.9	43	86	3	196	27	21	22	28	1.99
103682--103884	86	2.4	88	78	7	229	29	21	21	27	1.99
103996--104036	21	2.0	21	90	0	64	53	24	2	19	1.57
104005--104054	21	2.4	21	82	0	55	60	18	4	18	1.52
105970--106242	41	6.7	41	68	12	166	31	18	16	33	1.93
106026--106304	82	3.4	81	77	8	278	32	19	16	30	1.95
106832--106874	21	2.0	20	83	16	52	65	2	0	32	1.06
108429--108563	35	3.8	35	88	3	191	37	17	22	21	1.94
108420--108563	71	2.0	71	89	2	218	40	16	22	20	1.91
110209--110343	35	3.8	35	87	1	198	35	18	23	22	1.96
110200--110343	71	2.0	71	90	0	225	38	17	23	20	1.93
111991--112125	35	3.8	35	88	1	198	36	18	23	21	1.95
111982--112125	71	2.0	71	90	0	225	38	17	23	20	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116954--116993	21	1.9	21	89	0	62	50	2	0	47	1.14
118778--118824	23	2.0	23	91	0	76	59	6	0	34	1.23
121565--121785	20	10.8	20	76	7	176	38	26	19	15	1.92
121622--121785	42	4.0	42	92	3	287	35	28	20	15	1.93
121621--121785	82	2.0	83	95	2	296	36	27	20	15	1.93
121844--121986	6	24.7	6	99	0	251	30	51	17	0	1.45
122475--122517	6	7.2	6	100	0	86	0	16	48	34	1.46
122613--122758	20	7.2	20	68	15	86	15	19	22	41	1.89
122621--122682	20	3.1	20	90	4	90	19	19	25	35	1.95
123495--123534	2	20.0	2	100	0	80	50	0	0	50	1.00
125302--125335	15	2.1	17	89	10	54	29	2	5	61	1.34
139079--139184	31	3.5	31	75	13	112	30	18	26	24	1.98
139068--139236	60	2.8	60	83	0	212	33	16	21	28	1.95
153462--153586	59	2.1	59	88	5	182	34	17	12	36	1.87
155953--156080	59	2.2	59	91	0	202	35	19	10	34	1.87
156415--156637	95	2.4	94	82	8	265	28	22	15	33	1.95

Tables:   1

The End!