Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001872.1 Hibiscus syriacus cultivar Beakdansim tig00003795_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  82925

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3246--3456
103
2.0
106
94
4
374
33
18
9
38
1.84
5652--5746
2
48.0
2
97
2
183
50
0
0
49
1.00
5762--5798
18
2.0
19
94
5
67
75
2
10
10
1.14
5764--5804
18
2.2
18
86
4
55
75
7
9
7
1.18
12171--12231
30
2.0
30
81
18
72
29
4
13
52
1.61
15343--15388
24
2.0
23
83
12
58
58
6
2
32
1.36
20439--20475
17
2.2
17
100
0
74
13
24
43
18
1.86
20471--20520
19
2.7
18
85
14
66
26
26
30
18
1.98
27701--27737
17
2.2
17
100
0
74
10
21
48
18
1.78
27741--27804
19
3.3
20
81
12
80
26
28
28
17
1.97
27741--27825
10
8.7
10
76
12
79
28
25
27
18
1.98
29712--29771
25
2.6
23
82
10
61
36
5
1
56
1.31
30014--30105
46
2.0
46
97
0
175
28
20
28
22
1.99
35393--35432
12
3.6
11
87
9
55
47
2
0
50
1.14
35418--35718
22
13.6
22
79
9
285
44
0
8
45
1.37
35416--35718
66
4.6
66
82
3
385
45
0
8
45
1.37
35741--35800
31
1.9
31
96
0
111
45
6
5
43
1.52
37894--38165
147
1.9
147
87
3
404
43
19
11
25
1.84
38284--38312
2
14.5
2
100
0
58
51
0
0
48
1.00
39169--39201
16
2.0
17
94
5
59
18
12
24
45
1.83
39292--39381
45
2.0
45
97
0
171
25
15
8
50
1.73
42270--42309
20
2.0
21
90
5
64
35
5
15
45
1.68
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42238--42366
53
2.5
52
93
3
224
31
6
11
50
1.63
42323--42362
20
2.0
20
90
9
64
37
5
10
47
1.59
48165--48203
20
2.0
20
94
0
69
35
5
17
41
1.72
48217--48256
20
2.0
21
90
5
64
37
5
12
45
1.64
48164--48313
53
2.9
51
95
3
264
33
6
12
48
1.66
48270--48309
20
2.0
20
95
0
71
37
5
12
45
1.64
60223--60851
159
4.0
158
78
7
583
25
23
12
37
1.91
77638--77784
60
2.5
60
79
14
153
32
16
17
33
1.92
80046--80121
35
2.2
35
92
0
125
39
23
1
35
1.63
80513--80754
126
1.9
127
88
3
362
35
15
12
36
1.86
82635--82673
20
1.9
21
84
5
53
41
20
10
28
1.85

Tables:   1

The End!