Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001874.1 Hibiscus syriacus cultivar Beakdansim tig00003801_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81479

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
984--1018
9
4.0
9
92
3
54
45
0
45
8
1.34
8235--8291
27
2.1
28
93
3
98
33
15
7
43
1.74
12626--12702
26
2.8
28
80
18
81
53
2
5
38
1.37
18142--18170
5
5.8
5
100
0
58
20
0
0
79
0.74
18356--18403
24
2.0
24
100
0
96
16
16
0
66
1.25
19252--19314
33
1.9
33
93
0
108
50
6
15
26
1.68
25470--25676
76
2.7
76
85
4
267
21
24
31
23
1.98
26258--26296
8
4.9
8
84
9
53
53
30
0
15
1.42
26263--26295
17
1.9
17
100
0
66
54
30
0
15
1.41
28220--28302
21
3.8
22
78
12
82
16
24
37
21
1.94
28242--28304
24
2.9
22
88
9
85
17
25
36
20
1.94
34072--34281
76
2.8
75
81
4
253
21
24
30
23
1.99
38878--38924
21
2.3
21
96
3
87
55
12
0
31
1.38
44959--45126
60
2.8
59
81
6
178
33
18
4
42
1.71
48874--48956
29
2.8
29
74
1
85
51
3
3
40
1.37
48932--48976
17
2.7
17
77
16
58
55
0
0
44
0.99
49428--49467
18
2.2
19
95
4
73
45
0
0
55
0.99
49446--49525
34
2.4
33
83
8
92
45
1
1
52
1.16
49446--49525
32
2.4
34
85
4
101
45
1
1
52
1.16
51493--51525
16
2.1
16
100
0
66
57
24
12
6
1.57
51591--51675
10
8.7
10
73
19
81
57
21
11
9
1.62
51595--51659
16
4.1
16
95
0
121
56
23
12
7
1.61
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52420--52475
14
4.3
14
80
17
66
53
25
12
8
1.67
52400--52474
24
3.1
24
88
3
98
56
21
10
12
1.66
61343--61395
23
2.2
24
83
9
65
32
13
3
50
1.59
62210--62234
2
12.5
2
100
0
50
52
0
0
48
1.00
66229--66301
36
2.0
36
100
0
146
10
26
19
43
1.83
66936--67325
108
3.6
106
83
5
471
38
11
12
37
1.79
66936--67324
215
1.8
215
85
4
552
38
11
12
37
1.79
67497--67548
20
2.6
20
87
6
70
38
9
17
34
1.82
67511--67567
20
2.8
20
83
0
60
38
14
17
29
1.89
67607--67648
21
2.1
20
91
8
68
26
21
21
30
1.98
68825--68865
21
2.0
21
100
0
82
24
34
21
19
1.97
70512--70780
100
2.7
100
86
0
367
34
13
11
39
1.82
71609--71689
33
2.5
33
80
8
94
22
6
23
48
1.73
72067--72848
100
7.8
100
84
2
915
33
12
11
43
1.78
72067--72848
401
1.9
402
85
2
1061
33
12
11
43
1.78
72066--72848
301
2.6
299
83
2
985
33
12
11
43
1.78
76239--76326
36
2.5
35
82
8
99
37
6
13
42
1.71
76260--76329
36
2.0
35
91
2
113
35
2
14
47
1.59
80850--80960
39
2.9
38
77
14
122
30
4
15
49
1.64

Tables:   1

The End!