Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001875.1 Hibiscus syriacus cultivar Beakdansim tig00003802_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58781

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2489--2529
18
2.3
18
95
0
73
34
0
0
65
0.93
6373--6404
15
2.1
15
94
0
55
78
3
0
18
0.89
8125--8149
12
2.1
12
100
0
50
44
0
0
56
0.99
8915--8972
30
1.9
30
85
0
80
34
3
3
58
1.32
17396--17568
93
1.9
92
97
1
328
41
12
25
21
1.87
19263--19325
23
2.6
24
78
19
60
52
0
0
47
1.00
19280--19340
22
2.8
23
82
7
65
47
0
0
52
1.00
19291--19369
31
2.5
31
82
16
90
46
1
0
51
1.08
19368--19414
24
2.0
23
83
4
58
40
0
2
57
1.11
19393--19456
28
2.2
28
86
8
85
43
1
1
53
1.19
19623--19692
20
3.5
20
96
0
131
35
14
10
40
1.79
19623--19701
40
2.0
40
89
0
122
35
15
8
40
1.78
19675--19741
15
4.5
15
81
3
82
34
17
7
40
1.78
19675--19746
30
2.4
30
95
2
128
31
18
6
43
1.76
20575--20599
2
12.5
2
100
0
50
52
0
0
48
1.00
29211--29294
12
7.1
11
74
15
78
42
8
19
29
1.80
29202--29305
24
4.3
24
93
0
172
45
8
18
27
1.79
30073--30097
6
4.2
6
100
0
50
36
48
16
0
1.46
33468--33513
22
2.1
22
84
4
58
52
8
0
39
1.33
35596--35624
13
2.1
14
93
6
51
44
0
0
55
0.99
35911--35940
7
4.3
7
95
0
51
60
13
0
26
1.34
36987--37033
21
2.2
21
85
7
60
63
6
0
29
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53555--53584
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1

The End!