Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001876.1 Hibiscus syriacus cultivar Beakdansim tig00003805_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95567

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8202--8241
2
21.5
2
85
14
59
55
0
0
45
0.99
19349--19458
55
2.0
54
81
11
127
30
19
29
20
1.97
21868--21918
23
2.2
23
96
0
93
19
19
17
43
1.89
22582--22636
2
27.5
2
100
0
110
49
0
0
50
1.00
28326--28378
2
26.5
2
100
0
106
50
0
0
49
1.00
28743--28767
12
2.1
12
100
0
50
16
16
52
16
1.76
31367--31414
9
5.4
9
78
14
55
66
0
2
31
1.03
31912--31945
2
17.0
2
100
0
68
50
0
0
50
1.00
32374--32407
7
4.9
7
100
0
68
0
41
0
58
0.98
33942--34073
60
2.2
61
84
4
169
36
7
25
31
1.84
36165--36219
28
2.0
28
89
7
85
52
5
7
34
1.52
37112--37186
29
2.6
29
97
0
141
20
42
28
9
1.82
37196--37231
19
2.0
18
89
10
56
30
38
19
11
1.86
37245--37300
28
2.0
28
100
0
112
35
32
28
3
1.74
37283--37339
28
2.0
28
93
0
96
26
31
33
8
1.87
37328--37422
29
3.3
29
95
0
163
13
30
32
23
1.93
37430--37467
19
2.0
19
100
0
76
26
42
21
10
1.85
37465--37565
49
2.1
48
92
5
168
19
38
18
22
1.93
37722--37763
16
2.7
16
85
3
50
61
0
35
2
1.09
37773--37811
16
2.3
18
86
8
55
38
0
5
56
1.22
37872--37979
44
2.6
41
78
14
114
40
0
10
49
1.37
37915--38004
44
2.0
45
85
10
123
40
0
11
48
1.39
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37875--37984
40
2.6
41
76
11
107
40
0
10
49
1.38
38030--38073
12
3.5
12
85
11
61
27
0
18
54
1.44
38186--38223
15
2.6
15
87
4
51
34
2
7
55
1.43
40368--40400
17
1.9
17
100
0
66
48
9
6
36
1.60
40367--40417
14
3.4
14
82
12
57
45
7
7
39
1.62
40395--40438
21
2.1
21
86
0
61
45
4
9
40
1.56
40405--40438
11
3.2
11
83
8
52
47
5
8
38
1.59
40385--40449
14
5.2
13
76
17
50
46
7
7
38
1.61
40507--40551
22
2.2
22
84
11
60
44
4
2
48
1.35
40557--40583
7
3.9
7
100
0
54
14
14
14
55
1.70
40656--40703
14
3.6
14
81
16
66
47
16
0
35
1.47
40675--41025
60
6.3
49
82
14
182
45
13
0
40
1.46
40724--41152
60
7.2
60
95
2
751
45
14
0
39
1.47
40724--41152
179
2.4
179
94
4
774
45
14
0
39
1.47
40893--41099
10
20.7
10
67
20
58
44
14
0
40
1.50
44216--44269
28
1.9
28
96
0
99
57
12
0
29
1.36
44212--44276
28
2.3
28
84
10
96
55
10
0
33
1.35
44246--44294
21
2.3
21
85
3
71
53
16
0
30
1.43
44904--45020
20
5.8
20
71
16
82
11
17
47
23
1.79
44904--45006
30
3.4
30
89
0
170
10
18
47
23
1.79
44984--45016
10
3.3
10
100
0
66
9
18
51
21
1.73
45030--45170
29
4.9
29
98
0
264
8
27
43
19
1.80
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47359--47531
60
2.9
60
78
9
151
31
17
4
46
1.67
48993--49033
21
1.9
22
85
5
57
41
29
19
9
1.83
48992--49040
22
2.3
21
78
3
53
40
30
20
8
1.81
50968--51014
22
2.1
22
84
7
60
17
17
4
61
1.49
55183--55248
21
3.1
21
68
23
66
36
0
10
53
1.36
55183--55272
42
2.2
41
94
4
155
38
0
11
50
1.38
63337--63412
30
2.5
31
77
10
84
28
15
15
39
1.89
68744--68781
14
2.8
14
88
4
51
47
5
2
44
1.39
72229--72263
18
1.9
18
88
0
52
45
0
20
34
1.51
73344--73651
154
2.0
154
100
0
616
29
16
18
35
1.92
80860--80920
31
2.0
31
96
0
113
44
11
0
44
1.40
84571--84613
19
2.4
17
85
14
68
41
0
25
32
1.56
84575--84612
19
2.0
19
100
0
76
42
0
26
31
1.56
94718--94778
29
2.1
30
90
3
97
36
8
6
49
1.59

Tables:   1

The End!