genome.fa.s1877.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001877.1 Hibiscus syriacus cultivar Beakdansim tig00003813_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102219

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1849--2457	113	5.5	113	87	4	861	26	19	14	39	1.90
1849--2457	221	2.7	221	91	4	960	26	19	14	39	1.90
3312--3534	83	2.7	84	96	1	412	38	21	13	25	1.91
4902--4966	12	5.3	12	80	9	69	0	16	0	83	0.66
4903--4966	8	8.1	8	86	11	80	0	15	0	84	0.63
4903--4962	21	3.0	20	88	9	86	0	15	0	85	0.61
17735--17784	3	17.0	3	88	12	77	68	0	0	32	0.90
25365--25556	98	2.0	98	95	0	348	32	11	21	33	1.90
26572--26616	19	2.4	18	85	14	56	53	0	0	46	1.00
27523--27560	15	2.5	15	86	0	58	13	68	13	5	1.37
29547--29599	4	13.2	4	79	0	61	20	5	28	45	1.74
29547--29609	12	5.4	12	81	5	67	19	4	30	46	1.70
56766--56792	2	13.5	2	100	0	54	48	0	0	51	1.00
58105--58203	47	2.1	47	90	7	157	51	4	23	21	1.64
58341--58413	37	2.0	37	86	0	101	45	16	17	20	1.86
58576--58626	24	2.1	24	92	7	86	39	0	11	49	1.40
60462--60520	31	1.9	32	82	6	77	45	10	5	38	1.60
67209--67309	21	4.9	20	74	4	76	34	23	16	24	1.95
67276--67470	20	9.7	20	76	8	78	35	25	19	18	1.95
67276--67470	40	4.9	39	82	3	201	35	25	19	18	1.95
67276--67469	60	3.2	60	83	0	253	35	25	19	19	1.95
67849--67919	33	2.2	33	92	0	115	12	22	16	47	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67999--68108	21	5.8	20	74	17	108	45	18	24	11	1.83
67992--68108	41	3.1	38	81	14	145	46	17	25	11	1.81
68059--68115	14	3.7	14	75	20	60	43	22	24	8	1.81
68051--68131	33	2.5	33	95	0	144	46	22	22	8	1.78
68127--68240	14	7.1	17	70	26	79	10	23	21	43	1.84
68132--68242	33	3.5	33	90	7	185	9	23	21	45	1.82
69760--70016	93	2.8	93	100	0	514	22	13	19	44	1.85
70054--70182	19	7.3	19	75	17	125	45	28	17	8	1.77
70090--70182	33	2.8	32	91	4	150	46	27	18	7	1.76
70054--70182	52	2.5	52	74	14	140	45	28	17	8	1.77
70200--70256	14	3.7	14	77	20	60	10	21	22	45	1.82
70183--70275	33	2.8	33	95	0	168	10	20	21	47	1.80
70178--70292	19	6.6	19	73	18	106	10	20	23	46	1.81
72212--72247	14	2.6	14	90	0	54	30	0	22	47	1.52
72354--72451	19	5.4	19	82	13	134	45	17	21	15	1.84
72354--72469	53	2.2	53	96	1	216	43	18	23	14	1.86
72484--72538	14	3.6	14	73	21	56	10	23	20	45	1.82
72476--72623	33	4.5	33	86	7	210	14	21	19	44	1.86
72498--72590	20	5.4	19	67	27	82	13	20	19	46	1.84
74884--74908	12	2.1	12	100	0	50	0	28	0	72	0.86
75082--75128	24	2.0	24	87	8	69	38	21	14	25	1.92
75811--76000	20	9.5	20	83	4	204	19	18	25	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75987--76069	21	4.0	21	73	6	78	25	16	24	33	1.96
75967--76065	42	2.4	43	77	11	100	21	18	23	37	1.94
90612--90679	28	2.4	29	90	5	111	16	14	10	58	1.62
95009--95080	2	38.0	2	89	10	116	47	0	0	52	1.00
99178--99222	21	2.1	21	87	0	63	31	28	24	15	1.96
100496--100795	146	2.1	146	90	6	477	28	16	21	34	1.95

Tables:   1

The End!