Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001878.1 Hibiscus syriacus cultivar Beakdansim tig00003814_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79457

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
495--1481
105
9.5
105
86
6
1262
23
17
25
33
1.96
2256--2305
23
2.2
22
85
3
64
72
0
0
28
0.86
2282--2314
16
2.1
16
94
0
57
66
0
3
30
1.06
2243--2360
58
2.1
56
81
12
134
67
0
3
27
1.12
2566--2606
2
21.5
2
90
9
68
53
0
0
46
1.00
3065--3147
37
2.3
37
85
2
105
34
9
13
42
1.77
15638--15812
85
2.1
85
98
0
341
24
22
14
38
1.91
18466--18528
20
3.2
20
88
0
90
33
17
34
14
1.90
22323--22406
43
2.0
43
100
0
168
21
35
30
11
1.90
23601--23657
30
1.9
30
88
0
87
35
7
5
52
1.51
23682--23721
18
2.2
17
83
12
53
50
0
0
50
1.00
23972--24186
3
72.0
3
72
0
54
9
9
21
59
1.57
23989--24223
39
5.7
39
82
12
265
9
11
20
58
1.61
24057--24210
12
12.4
12
68
8
58
9
11
20
58
1.61
24077--24223
48
3.2
48
87
12
213
7
12
21
58
1.58
26474--26576
21
5.1
20
73
3
98
17
19
26
36
1.94
26478--26575
41
2.4
39
100
0
142
18
20
24
36
1.94
26503--26628
20
6.2
20
74
11
96
16
21
23
38
1.92
26588--26633
19
2.5
19
96
3
85
19
21
19
39
1.93
26701--26788
19
4.5
19
77
8
104
39
20
19
20
1.92
26754--26876
20
6.1
20
71
11
90
40
22
21
15
1.90
30282--30329
3
17.0
3
79
12
57
31
4
0
64
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
30282--30329
11
4.3
11
78
5
60
31
4
0
64
1.12
30286--30324
20
2.0
20
89
0
60
33
5
0
61
1.18
30213--30329
6
20.2
6
72
11
59
26
5
3
64
1.30
42756--42811
15
3.6
15
79
9
67
42
12
12
32
1.80
42759--42809
17
3.1
17
77
11
61
43
11
9
35
1.75
43187--43241
13
4.2
13
75
13
58
49
10
3
36
1.56
43227--43325
33
3.0
33
94
1
164
45
15
7
32
1.73
43320--43359
21
1.9
21
94
0
71
47
7
15
30
1.72
45659--45704
12
3.6
12
81
16
56
17
19
17
45
1.85
45658--45697
15
2.9
14
85
14
57
20
17
15
47
1.83
46836--46940
46
2.3
46
91
0
165
37
13
19
30
1.90
53774--54213
214
2.0
218
91
5
708
46
12
13
27
1.78
59410--59485
36
2.1
36
85
7
100
48
1
2
47
1.24
69410--69438
14
2.1
14
100
0
58
6
17
27
48
1.72
70518--70558
15
2.7
15
88
7
57
9
12
21
56
1.65
70816--70882
24
2.8
24
86
0
89
55
16
13
14
1.70

Tables:   1

The End!