genome.fa.s188.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000188.1 Hibiscus syriacus cultivar Beakdansim tig00000337_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131815

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16357--16422	3	22.0	3	93	0	114	36	0	0	63	0.95
18333--18412	21	3.9	21	81	3	99	20	36	26	17	1.94
18335--18412	41	1.9	41	89	0	120	19	37	25	17	1.94
19691--19738	19	2.5	20	82	3	62	54	6	10	29	1.59
21116--21236	42	2.9	40	82	8	145	19	33	28	18	1.95
21114--21236	21	5.9	21	80	5	126	20	34	27	17	1.95
22531--22571	21	2.0	21	86	9	59	19	7	4	68	1.32
25018--25046	10	3.0	10	95	5	51	48	0	0	51	1.00
25249--25325	35	2.2	36	90	6	122	42	0	7	49	1.31
28055--28096	22	1.9	22	95	0	75	45	7	4	42	1.52
28148--28239	24	3.8	24	84	5	114	41	6	3	48	1.45
28648--28686	12	3.2	12	96	0	69	46	7	23	23	1.78
28682--28818	66	2.2	64	90	6	217	34	8	21	35	1.84
28884--28923	16	2.4	17	83	4	55	75	0	2	22	0.93
28884--28922	11	3.5	11	86	6	53	76	0	2	20	0.90
30150--30208	30	2.0	30	82	0	73	37	16	6	38	1.76
31190--31224	18	1.9	18	88	0	52	37	2	5	54	1.39
39079--39137	29	2.0	29	100	0	118	49	13	13	23	1.78
42376--42421	24	1.9	24	90	0	74	21	26	28	23	1.99
42904--42984	30	2.7	30	90	3	119	19	29	20	29	1.97
42969--42997	15	1.9	15	100	0	58	27	20	13	37	1.91
42969--43005	15	2.7	14	88	12	51	29	24	10	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46511--46630	61	1.9	64	84	6	165	28	29	15	26	1.96
50897--50966	29	2.3	31	82	4	81	27	18	8	45	1.78
63813--63852	8	5.0	8	93	0	71	52	0	12	35	1.39
70476--70509	2	17.0	2	100	0	68	50	0	0	50	1.00
74073--74149	13	5.3	13	72	22	64	16	45	22	15	1.85
74068--74141	17	4.5	17	80	14	93	17	47	21	13	1.82
74073--74149	30	2.6	30	93	0	136	16	45	22	15	1.85
76656--76755	24	4.2	24	74	5	94	22	14	17	47	1.82
78833--78909	13	5.3	13	72	22	64	16	45	22	15	1.85
78828--78901	17	4.5	17	80	14	93	17	47	21	13	1.82
78833--78909	30	2.6	30	93	0	136	16	45	22	15	1.85
81411--81510	24	4.2	24	71	5	85	23	14	16	47	1.82
83571--83659	21	4.2	21	91	4	126	16	21	22	39	1.92
83571--83659	42	2.1	42	89	0	142	16	21	22	39	1.92
83652--83722	20	3.5	20	88	1	97	40	25	12	21	1.88
83726--83787	28	2.2	28	94	0	106	32	12	17	37	1.88
84747--84801	24	2.3	24	81	3	67	23	18	16	41	1.89
85368--85423	28	2.0	28	100	0	112	39	17	32	10	1.84
87091--87126	18	2.0	18	94	0	63	55	25	2	16	1.55
87371--87432	29	2.1	29	84	0	79	30	17	25	25	1.97
87409--87455	20	2.3	20	81	0	58	48	17	17	17	1.81
88983--89077	21	4.7	21	83	6	124	21	18	38	21	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88983--89073	42	2.3	39	92	5	146	19	19	39	20	1.93
89204--89257	21	2.6	21	84	0	72	35	29	16	18	1.93
89330--89370	21	2.0	21	90	0	64	29	36	14	19	1.92
89632--89674	16	2.7	16	100	0	86	6	27	32	32	1.84
91057--91110	20	2.7	19	83	8	72	51	22	12	12	1.74
91370--91413	19	2.3	19	80	0	52	70	2	0	27	0.99
91694--91742	20	2.5	20	93	0	80	18	12	22	46	1.82
91733--91782	20	2.5	20	86	0	73	24	16	24	36	1.94
92419--92531	30	3.4	33	81	11	108	30	3	7	58	1.42
92972--93007	13	2.8	13	95	0	63	33	5	5	55	1.46
94446--94481	3	12.0	3	100	0	72	0	0	66	33	0.92
97083--97151	15	4.5	15	67	15	52	23	1	13	62	1.39
97077--97133	29	1.9	29	82	10	71	26	0	12	61	1.31
105460--105506	13	3.5	13	77	13	51	55	2	2	40	1.24
106421--106456	16	2.2	16	90	0	54	2	16	2	77	1.00
106424--106468	15	3.1	15	80	3	56	2	22	6	68	1.24
106910--106978	3	23.0	3	87	0	102	60	0	0	39	0.97
109535--109600	23	2.9	23	83	0	78	24	25	27	22	2.00
109633--109842	107	2.0	105	81	5	244	37	20	15	27	1.92
110484--110536	23	2.3	23	90	0	79	37	18	7	35	1.80
110495--110538	23	1.9	23	100	0	88	36	11	9	43	1.72
116000--116058	29	2.0	30	83	9	77	61	3	6	28	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117380--117424	3	16.3	3	82	17	53	68	2	0	28	1.01
117379--117427	16	3.1	15	82	2	62	67	2	0	30	1.02
117735--118645	113	8.0	113	85	3	1143	28	20	13	37	1.90
117736--118646	339	2.7	339	92	3	1470	28	20	13	37	1.90
119417--119566	54	2.9	54	79	7	145	30	21	13	35	1.91
119478--119566	46	1.9	46	90	0	142	28	23	12	35	1.91
123768--123808	20	2.1	20	86	4	57	58	9	0	31	1.31
124195--124247	7	7.7	7	83	12	74	0	24	0	75	0.80
124184--124251	27	2.6	27	88	4	104	0	23	0	76	0.79
126907--126944	15	2.6	14	91	4	58	60	10	15	13	1.59
128444--128511	28	2.6	28	86	9	90	61	0	4	33	1.16
129501--129559	29	2.0	30	83	9	77	61	3	6	28	1.38

Tables:   1

The End!