Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001880.1 Hibiscus syriacus cultivar Beakdansim tig00003817_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64335

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
328--396
35
2.0
35
88
5
104
34
2
14
47
1.59
4841--4952
36
2.9
39
82
9
158
30
4
16
49
1.65
8191--8245
26
2.1
26
96
0
101
29
12
7
50
1.67
8876--8907
2
16.0
2
100
0
64
50
0
0
50
1.00
9847--9988
60
2.4
60
83
2
169
35
18
5
40
1.74
21801--21901
51
2.0
51
94
0
175
30
19
12
36
1.90
24112--24142
16
1.9
16
100
0
62
16
25
12
45
1.83
41502--41544
16
2.7
16
85
0
50
58
2
18
20
1.50
45354--45404
22
2.4
22
83
3
59
41
25
3
29
1.73
47972--47998
2
13.5
2
100
0
54
51
0
0
48
1.00
52294--52358
12
5.5
12
79
3
60
15
12
44
27
1.82
52294--52338
12
3.8
12
91
2
65
13
8
46
31
1.74
52361--52426
24
2.6
25
79
15
75
45
0
0
54
0.99
52583--52611
13
2.3
13
94
5
51
10
17
58
13
1.62
56163--56192
2
15.0
2
100
0
60
50
0
0
50
1.00
57109--57198
32
2.8
32
79
1
83
33
12
17
36
1.87
57847--57893
14
3.3
15
82
14
64
38
0
4
57
1.18

Tables:   1

The End!