genome.fa.s1881.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001881.1 Hibiscus syriacus cultivar Beakdansim tig00003821_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  134940

Tables:   1   

This is table  1  of  1  ( 68 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8616--8641	13	2.0	13	100	0	52	46	15	0	38	1.46
13144--13209	33	2.0	33	96	0	123	18	19	21	40	1.91
13743--13796	22	2.5	22	84	6	74	62	1	5	29	1.28
14332--14366	16	2.2	16	94	0	61	20	14	20	45	1.85
16880--17110	117	2.0	117	89	1	356	33	17	23	25	1.96
24533--24591	22	2.6	23	91	5	102	23	30	27	18	1.98
24986--25059	2	37.0	2	97	0	139	48	1	0	50	1.09
25296--25330	18	1.9	18	88	11	54	22	17	5	54	1.64
25915--25959	21	2.1	21	87	0	63	15	24	28	31	1.96
32780--32807	2	14.0	2	100	0	56	50	0	0	50	1.00
32849--33096	123	2.0	125	92	1	419	32	14	13	39	1.84
33305--33396	2	46.0	2	100	0	184	50	0	0	50	1.00
33703--33778	29	2.6	29	93	0	125	44	10	15	28	1.80
33703--33789	29	3.0	29	87	0	93	43	10	14	31	1.79
36345--36402	25	2.2	25	81	6	62	63	1	0	34	1.04
40253--40368	60	1.9	60	85	3	162	34	12	14	38	1.83
41023--41064	21	2.0	21	90	0	66	28	26	21	23	1.99
41157--41226	19	3.8	19	70	24	69	18	25	34	21	1.96
41191--41230	20	2.0	20	90	9	64	17	27	35	20	1.95
43937--43999	21	3.0	21	95	0	108	28	28	19	23	1.98
44129--44169	21	2.0	21	85	9	57	17	31	36	14	1.90
47164--47189	13	2.0	13	100	0	52	46	23	0	30	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55745--55774	2	15.0	2	92	0	51	0	53	0	46	1.00
55902--55939	19	2.0	19	100	0	76	15	36	0	47	1.46
65435--65479	24	1.9	23	81	4	54	40	6	0	53	1.27
67794--67838	2	22.5	2	100	0	90	48	0	0	51	1.00
70080--70105	7	3.7	7	100	0	52	61	0	0	38	0.96
74658--74692	4	8.8	4	87	0	52	28	2	20	48	1.63
74650--74693	20	2.2	20	91	0	70	31	2	15	50	1.57
75116--75154	18	2.2	17	86	4	51	56	2	0	41	1.13
77045--77076	3	11.0	3	93	6	57	68	0	31	0	0.90
87009--87040	12	2.7	12	95	0	55	3	43	0	53	1.16
90655--90860	29	7.0	29	72	12	136	35	7	1	55	1.37
90678--90774	31	3.4	27	73	11	86	35	5	1	58	1.27
90655--90860	60	3.5	58	80	6	220	35	7	1	55	1.37
90844--90871	13	2.2	13	100	0	56	42	0	0	57	0.99
90655--90890	116	2.0	118	81	6	275	37	6	1	53	1.37
90934--91093	30	5.4	30	69	21	97	52	1	8	36	1.43
90949--91016	28	2.4	30	80	14	81	52	1	11	33	1.47
90954--91093	57	2.4	57	74	15	135	54	2	7	35	1.42
93429--93491	22	2.7	23	80	9	74	44	1	11	42	1.49
94450--94483	17	1.9	18	88	5	52	32	11	0	55	1.36
94439--94491	25	2.1	26	82	10	65	37	9	0	52	1.34
99324--99368	20	2.2	20	92	0	72	26	24	11	37	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
99717--99774	15	3.6	15	76	17	62	44	12	12	31	1.78
99720--99755	19	1.9	19	94	5	65	41	11	11	36	1.76
99816--99918	33	3.2	33	90	2	156	43	15	7	33	1.75
99913--99954	21	2.0	21	95	0	75	47	7	14	30	1.71
102294--102352	28	2.1	28	81	12	68	22	15	15	47	1.82
115524--115568	21	2.1	21	87	0	63	31	28	24	15	1.96
116204--116250	23	2.0	24	91	4	78	44	0	21	34	1.52
116466--116590	31	4.0	31	88	2	180	20	20	22	36	1.96
119747--119791	21	2.1	21	84	8	56	33	28	22	15	1.95
120640--120764	31	4.0	31	88	2	180	20	20	22	36	1.96
125509--125566	2	29.0	2	100	0	116	50	0	0	50	1.00
125559--125607	19	2.4	20	83	13	64	65	0	0	34	0.93
126057--127415	105	13.3	104	90	4	1791	22	18	25	33	1.97
126057--127415	211	6.7	212	86	8	1849	22	18	25	33	1.97
126491--126649	51	3.3	50	69	18	147	20	18	27	33	1.96
126410--127415	94	10.1	94	87	9	1267	22	18	25	33	1.97
126540--126695	43	3.4	43	71	16	143	19	19	26	33	1.96
127161--127316	43	3.4	43	67	13	123	21	20	25	32	1.97
130915--130969	24	2.3	24	81	9	60	72	1	5	20	1.13
130954--130986	17	1.9	17	88	11	50	78	0	3	18	0.87
133560--133635	32	2.3	33	90	6	118	34	31	2	31	1.72
134415--134444	2	15.5	2	93	6	53	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134460--134493	17	1.9	18	88	5	52	38	0	0	61	0.96
134433--134507	28	2.5	31	87	10	111	40	1	0	58	1.06

Tables:   1

The End!