genome.fa.s1882.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001882.1 Hibiscus syriacus cultivar Beakdansim tig00003822_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  81714

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15464--15590	67	1.9	68	83	3	166	33	14	12	38	1.85
19025--19058	2	17.5	2	93	6	61	50	0	0	50	1.00
20980--21009	14	2.1	14	93	0	51	30	10	20	40	1.85
21230--21408	31	5.7	31	89	3	236	27	17	20	34	1.95
24787--24816	3	10.0	3	92	0	51	63	3	0	33	1.11
25177--25255	29	2.8	27	74	11	77	45	1	17	35	1.57
26411--26447	3	12.3	3	88	11	58	29	0	0	70	0.88
26412--26455	12	3.6	13	88	8	58	29	0	2	68	1.02
26418--26459	19	2.2	19	87	8	59	33	0	2	64	1.07
28848--28881	17	1.9	18	88	5	52	38	2	2	55	1.30
32653--32731	26	3.3	25	68	21	78	24	21	10	44	1.83
32660--32731	20	3.3	20	68	20	63	23	22	11	43	1.85
33346--33383	11	3.4	11	89	7	58	71	10	13	5	1.30
34557--34592	4	9.5	4	88	11	58	50	25	0	25	1.50
35059--35296	105	2.3	101	82	5	264	31	18	12	38	1.87
35243--35323	36	2.3	36	80	6	94	32	20	9	37	1.86
35258--35361	36	3.0	36	81	4	124	32	20	11	35	1.88
35596--35786	30	6.7	28	88	5	233	29	10	15	43	1.80
35593--35786	57	3.4	56	83	8	248	29	11	14	44	1.81
35797--35899	52	2.0	53	92	5	174	33	13	17	35	1.89
35886--35951	27	2.4	27	87	9	91	31	6	16	45	1.72
35913--36051	67	2.1	67	91	1	235	35	10	11	43	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36300--36422	63	2.0	62	86	1	174	30	14	11	43	1.81
36853--36927	35	2.1	36	85	7	100	36	20	12	32	1.89
37204--37257	28	1.9	28	85	7	74	22	16	16	44	1.86
37267--37523	43	5.9	43	72	11	193	27	30	19	22	1.98
37332--37572	129	1.9	130	95	0	439	26	30	19	23	1.98
37773--37809	3	12.3	3	88	11	58	29	0	0	70	0.88
37774--37817	12	3.6	13	88	8	58	29	0	2	68	1.02
37780--37821	19	2.2	19	87	8	59	33	0	2	64	1.07
39822--39877	27	2.0	27	83	10	69	23	12	8	55	1.65
40165--40198	17	1.9	18	88	5	52	38	2	2	55	1.30
40807--41220	208	2.0	206	97	1	785	23	25	18	32	1.97
41803--41831	15	1.9	15	100	0	58	34	6	20	37	1.80
52142--52257	60	1.9	61	98	1	225	38	7	6	47	1.57
52625--52656	16	2.0	16	93	0	55	40	6	3	50	1.43
55418--55497	31	2.6	31	86	4	99	51	5	1	42	1.31
64613--64685	3	24.3	3	87	0	101	31	2	36	28	1.71
67803--67945	59	2.4	60	82	5	175	32	17	17	32	1.93
74808--74857	20	2.5	20	90	3	75	36	6	20	38	1.77
75863--75913	25	2.0	24	85	14	68	37	11	13	37	1.82
79168--79272	52	2.0	52	100	0	210	34	33	9	22	1.87
79180--79262	25	3.2	25	68	18	80	34	30	10	24	1.89
80085--80117	2	16.5	2	93	0	57	3	45	0	51	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81190--81231	5	8.6	5	94	5	77	0	0	38	61	0.96
81191--81230	19	2.1	19	100	0	80	0	0	40	60	0.97

Tables:   1

The End!