genome.fa.s1883.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001883.1 Hibiscus syriacus cultivar Beakdansim tig00003824_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  94701

Tables:   1   

This is table  1  of  1  ( 58 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2126--2189	22	2.9	22	75	11	76	53	15	14	17	1.74
3580--3623	2	22.0	2	100	0	88	50	0	0	50	1.00
11019--11089	26	2.8	25	83	12	85	46	0	1	52	1.09
10979--11093	12	9.4	12	74	17	87	39	0	1	59	1.08
11015--11106	13	7.1	14	71	19	67	40	0	1	58	1.05
11094--11163	18	3.6	20	78	20	69	37	1	0	61	1.05
11094--11141	19	2.4	21	76	20	57	41	2	0	56	1.11
11628--11674	17	2.8	17	100	0	94	23	6	6	63	1.41
16509--16560	23	2.3	23	83	6	61	42	1	0	55	1.10
16508--16562	20	2.7	21	83	5	60	43	1	0	54	1.10
16516--16560	17	2.7	16	86	6	63	42	2	0	55	1.12
16516--16566	17	3.0	16	80	11	57	41	3	0	54	1.19
21022--21056	6	5.5	6	87	12	52	14	17	14	54	1.72
26079--26220	54	2.6	54	79	7	137	33	10	15	40	1.81
26095--26227	54	2.5	53	79	8	144	31	9	15	43	1.79
26249--26443	91	2.2	92	92	3	333	26	15	22	34	1.94
26455--26805	136	2.6	136	91	0	560	32	16	23	27	1.96
26693--26901	96	2.2	96	92	0	337	28	18	22	31	1.97
26557--27037	232	2.1	232	91	0	782	30	18	22	28	1.97
26789--27217	136	3.2	136	89	3	654	33	17	21	27	1.96
26459--27173	368	1.9	368	91	0	1153	31	17	22	27	1.97
27157--27207	18	2.8	18	70	18	52	49	11	19	19	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27399--27437	3	12.7	3	83	5	51	38	2	0	58	1.12
27386--27435	19	2.6	19	83	3	64	42	2	2	54	1.23
29422--29460	8	4.8	8	81	6	51	28	2	0	69	1.02
31972--32022	25	2.0	25	100	0	102	45	3	23	27	1.70
36527--36585	29	2.0	29	100	0	118	23	13	13	49	1.78
41183--41241	29	2.0	29	96	0	109	25	13	11	49	1.76
43145--43199	3	18.7	3	96	3	103	34	0	0	65	0.93
43501--43576	40	1.9	40	94	2	136	39	5	14	40	1.68
43506--43594	40	2.2	40	82	7	101	41	6	13	38	1.71
44212--44284	28	2.6	28	95	0	128	27	10	8	53	1.64
44482--44554	31	2.3	32	86	6	114	23	17	5	53	1.65
45250--45294	20	2.5	18	80	19	58	24	24	11	40	1.87
45263--45300	20	1.9	20	100	0	76	23	28	10	36	1.88
45978--46019	21	2.0	21	86	4	59	35	0	4	59	1.19
51349--51413	26	2.5	26	80	5	69	43	6	1	49	1.37
52074--52098	12	2.1	12	100	0	50	40	12	16	32	1.84
52129--52185	29	2.0	29	96	0	105	15	35	29	19	1.93
52244--52328	29	2.9	29	91	0	134	17	34	28	20	1.95
52129--52442	143	2.2	143	99	0	619	23	32	25	19	1.98
52387--52442	29	1.9	29	88	0	85	16	35	28	19	1.93
52478--52510	14	2.4	14	94	0	57	6	30	39	24	1.79
52497--52573	10	7.7	10	79	16	88	12	28	33	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52497--52576	20	4.0	20	98	0	142	12	30	32	25	1.92
54055--54112	21	2.6	22	78	8	64	44	0	0	55	0.99
66405--66433	13	2.2	13	100	0	58	58	6	13	20	1.58
67682--67726	23	2.0	23	100	0	90	31	35	2	31	1.70
77428--77479	24	2.2	24	82	0	59	50	17	11	21	1.77
77448--77566	24	5.0	24	84	6	143	40	18	16	24	1.91
79868--79897	3	10.0	3	100	0	60	66	0	0	33	0.92
89251--89311	21	3.0	20	74	9	61	70	3	8	18	1.26
89253--89424	84	2.0	85	90	5	269	63	9	8	18	1.49
89251--89399	39	3.6	39	68	24	101	66	6	8	18	1.41
89548--89581	2	17.0	2	100	0	68	50	0	0	50	1.00
90500--90575	24	3.2	24	86	3	82	44	19	13	22	1.85
90517--90632	24	4.8	24	85	8	146	40	19	14	25	1.90
93013--93048	18	2.0	18	94	0	63	19	16	50	13	1.79

Tables:   1

The End!